Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 2.7e-136 488.8 271 100.0
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 3.8e-130 468.4 271 96.7
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.8e-125 452.2 271 93.0
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 2.6e-123 445.7 271 91.1
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.3e-122 443.4 271 91.1
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.9e-121 439.5 271 90.4
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 2.1e-112 409.5 269 86.6
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 3.7e-109 398.7 271 82.3
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 1.1e-105 387.1 271 79.3
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.4e-92 342.8 212 90.1
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 2.4e-92 342.8 269 71.7
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.7e-90 336.7 269 72.9
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 3.8e-90 335.5 271 73.1
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 7.2e-89 331.3 274 72.6
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.0e-87 327.4 282 65.6
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 1.8e-87 326.6 282 66.0
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 5.1e-87 325.1 282 68.1
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 6.7e-87 324.7 284 65.1
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 1.5e-86 323.6 281 65.8
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 2.6e-86 322.8 269 68.0
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 1.7e-85 320.1 280 65.0
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 8.2e-85 317.8 269 67.3
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 2.4e-84 316.2 280 65.7
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 7.0e-84 314.7 299 62.5
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 9.1e-84 314.3 270 66.3
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 3.4e-83 312.4 271 67.2
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 3.4e-83 312.4 279 64.5
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.0e-82 310.8 270 65.6
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 2.9e-82 309.3 271 63.1
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 2.9e-82 309.3 270 64.8
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 3.8e-82 308.9 277 66.1
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 2.5e-81 306.2 279 62.0
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 3.2e-81 305.8 331 59.5
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.6e-80 303.5 281 63.7
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 2.7e-80 302.8 281 63.7
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 3.6e-80 302.4 278 64.7
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 4.7e-80 302.0 281 63.7
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 6.1e-80 301.6 282 62.4
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 6.1e-80 301.6 282 62.4
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 8.0e-80 301.2 271 60.5
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 2.3e-79 299.7 282 62.4
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 6.7e-79 298.1 272 63.2
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 6.7e-79 298.1 270 61.9
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 6.7e-79 298.1 282 61.3
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 1.5e-78 297.0 268 64.6
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 1.5e-78 297.0 270 63.7
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 3.3e-78 295.8 282 60.6
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 9.7e-78 294.3 259 64.5
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 9.7e-78 294.3 259 64.5
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 1.3e-77 293.9 280 62.1
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 2.8e-77 292.7 272 62.9
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 2.8e-77 292.7 268 61.9
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 2.8e-77 292.7 278 57.9
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 8.2e-77 291.2 272 62.1
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 8.2e-77 291.2 288 59.4
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 1.1e-76 290.8 282 59.6
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 1.1e-76 290.8 273 61.5
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 1.4e-76 290.4 275 59.6
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 3.1e-76 289.3 272 62.9
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 5.3e-76 288.5 273 60.1
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 5.3e-76 288.5 273 60.4
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 7.0e-76 288.1 265 62.6
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 7.0e-76 288.1 275 58.9
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.6e-75 287.0 278 58.6
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 3.5e-75 285.8 281 60.5
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 3.5e-75 285.8 289 58.5
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 4.5e-75 285.4 286 59.8
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 1.3e-74 283.9 279 59.5
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 1.3e-74 283.9 256 61.7
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 3.8e-74 282.3 281 58.4
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 6.5e-74 281.6 272 63.6
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 8.5e-74 281.2 245 66.9
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 8.5e-74 281.2 277 61.4
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 1.1e-73 280.8 280 59.6
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 2.5e-73 279.6 270 63.7
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.5e-73 279.6 282 57.4
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.5e-73 279.6 281 58.0
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 3.2e-73 279.3 279 57.7
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 5.5e-73 278.5 272 64.0
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 1.2e-72 277.3 272 62.9
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 2.7e-72 276.2 279 59.1
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 6.1e-72 275.0 281 60.1
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 6.1e-72 275.0 272 62.1
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.0e-71 274.2 282 58.2
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 1.4e-71 273.9 272 62.5
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.4e-71 273.9 273 63.0
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 3.0e-71 272.7 310 54.5
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 5.2e-71 271.9 272 60.3
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 1.2e-70 270.8 281 59.1
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 3.7e-69 265.8 268 60.8
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 3.7e-69 265.8 275 58.2
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 8.2e-69 264.6 258 60.9
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 1.8e-68 263.5 278 57.2
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.3e-66 257.3 275 54.9
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 6.5e-66 255.0 277 58.1
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 3.2e-65 252.7 272 55.1
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.5e-65 251.9 159 89.9
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 2.1e-64 250.0 278 54.7
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.7e-64 249.6 192 77.1
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 2.7e-64 249.6 272 55.9
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.7e-61 240.4 261 52.9
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 1.7e-61 240.4 293 51.2
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 2.8e-61 239.6 296 52.0
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 8.3e-61 238.0 268 55.6
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 2.4e-60 236.5 168 81.0
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 1.2e-59 234.2 246 56.9
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 2.3e-58 229.9 277 53.4
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 3.3e-57 226.1 149 85.9
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 1.4e-55 220.7 183 63.9
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.0e-54 216.9 248 54.4
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.6e-54 216.5 191 69.6
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 3.7e-53 212.6 292 46.2
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 8.3e-53 211.5 262 49.6
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 5.2e-47 192.2 243 53.1
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 1.3e-45 187.6 266 46.2
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 3.0e-42 176.4 275 43.6
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 3.0e-42 176.4 233 47.6
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 6.2e-40 168.7 144 68.1
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.7e-37 160.6 134 72.4
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.7e-37 160.6 165 61.8
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 6.0e-35 152.1 277 44.8
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 3.0e-34 149.8 143 62.9
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 5.8e-30 135.6 180 52.8
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 6.0e-27 125.6 284 35.6
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 4.3e-25 119.4 294 30.6
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 1.8e-23 114.0 363 28.9
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 4.9e-21 105.9 82 74.4
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 7.8e-19 98.6 70 75.7
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 7.8e-19 98.6 256 32.8
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 3.4e-14 83.2 98 50.0
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 1.3e-10 71.2 81 53.1
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 5.1e-10 69.3 37 97.3
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 5.6e-09 65.9 84 47.6


User provided reference genes

Program Settings