Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 2.1e-25 118.2 60 100.0
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 1.8e-24 115.2 60 98.3
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-21 105.9 63 88.9
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 5.4e-21 103.6 62 87.1
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 5.4e-21 103.6 62 87.1
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 5.4e-21 103.6 62 87.1
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 5.4e-21 103.6 62 87.1
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-20 102.1 62 85.5
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 1.1e-18 95.9 58 86.2
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.5e-18 95.5 60 83.3
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 4.3e-18 94.0 57 86.0
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 4.3e-18 94.0 60 83.3
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 6.8e-16 86.7 58 81.0
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 5.8e-15 83.6 58 77.6
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 4.9e-14 80.5 56 76.8
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 9.2e-13 76.3 54 75.9
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 1.6e-12 75.5 53 75.5
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 3.5e-12 74.3 59 66.1
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 1.3e-11 72.4 59 64.4
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 1.7e-11 72.0 57 68.4
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 3.9e-11 70.9 58 67.2
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 8.6e-11 69.7 58 65.5
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 1.1e-10 69.3 57 64.9
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 1.1e-10 69.3 56 67.9
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.5e-10 68.9 55 65.5
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 2.5e-10 68.2 57 63.2
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 2.5e-10 68.2 57 63.2
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 5.6e-10 67.0 58 62.1
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 9.5e-10 66.2 57 63.2
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 4.7e-09 63.9 56 62.5
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 6.2e-09 63.5 55 63.6
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 6.2e-09 63.5 55 63.6
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 8.1e-09 63.2 57 59.6
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 8.1e-09 63.2 60 55.0
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.4e-08 62.4 46 67.4
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 1.8e-08 62.0 58 51.7
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 1.8e-08 62.0 57 57.9
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.8e-08 62.0 55 61.8
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 1.8e-08 62.0 55 61.8
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 3.1e-08 61.2 53 60.4
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 5.2e-08 60.5 55 60.0
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 5.2e-08 60.5 56 57.1
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 5.2e-08 60.5 56 60.7
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 5.2e-08 60.5 56 58.9
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 1.2e-07 59.3 58 55.2
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 1.5e-07 58.9 51 62.7
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 1.5e-07 58.9 49 59.2
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 2.0e-07 58.5 48 58.3
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 2.0e-07 58.5 49 51.0
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 2.0e-07 58.5 59 50.8
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 2.0e-07 58.5 57 56.1
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 2.6e-07 58.2 37 78.4
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 2.6e-07 58.2 54 57.4
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 5.8e-07 57.0 52 57.7
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 5.8e-07 57.0 48 56.2
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 5.8e-07 57.0 47 61.7
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 5.8e-07 57.0 58 53.4
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 5.8e-07 57.0 47 55.3
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 5.8e-07 57.0 48 52.1
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 7.6e-07 56.6 45 60.0
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 7.6e-07 56.6 45 60.0
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 7.6e-07 56.6 56 57.1
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 7.6e-07 56.6 48 62.5
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 7.6e-07 56.6 42 66.7
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 9.9e-07 56.2 48 58.3
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 9.9e-07 56.2 48 58.3
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.3e-06 55.8 53 52.8
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 1.3e-06 55.8 57 56.1
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 1.3e-06 55.8 51 56.9
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.3e-06 55.8 52 57.7
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.7e-06 55.5 55 52.7
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 1.7e-06 55.5 47 57.4
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 2.2e-06 55.1 48 52.1
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 2.2e-06 55.1 55 49.1
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 2.9e-06 54.7 58 55.2
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 2.9e-06 54.7 45 57.8
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 3.7e-06 54.3 48 47.9
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 3.7e-06 54.3 48 47.9
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 3.7e-06 54.3 48 47.9
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 4.9e-06 53.9 53 50.9
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 6.4e-06 53.5 48 45.8
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 6.4e-06 53.5 55 52.7
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 6.4e-06 53.5 55 52.7
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 8.4e-06 53.1 61 45.9
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 8.4e-06 53.1 61 45.9
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 8.4e-06 53.1 47 61.7
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 8.4e-06 53.1 50 52.0


User provided reference genes

Program Settings