Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 7.3e-37 156.8 82 100.0
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 4.0e-27 124.4 68 98.5
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 6.4e-25 117.1 68 92.6
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 6.4e-25 117.1 68 92.6
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.4e-25 116.7 68 92.6
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-24 116.3 68 92.6
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-24 116.3 68 92.6
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 2.4e-24 115.2 68 91.2
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.4e-24 115.2 68 91.2
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.4e-24 115.2 68 91.2
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 7.9e-23 110.2 67 88.1
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 2.3e-22 108.6 67 85.1
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 6.7e-22 107.1 67 85.1
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 1.1e-21 106.3 67 82.1
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 1.1e-21 106.3 67 82.1
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 1.1e-21 106.3 67 82.1
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.1e-21 106.3 67 85.1
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 1.9e-21 105.5 67 85.1
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 1.9e-21 105.5 75 77.3
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.9e-21 105.5 67 83.6
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 2.5e-21 105.1 67 83.6
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 2.5e-21 105.1 67 83.6
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 4.3e-21 104.4 67 82.1
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 5.6e-21 104.0 67 83.6
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 5.6e-21 104.0 67 83.6
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 5.6e-21 104.0 67 83.6
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 5.6e-21 104.0 66 83.3
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 7.4e-21 103.6 68 79.4
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 7.4e-21 103.6 67 82.1
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 7.4e-21 103.6 68 80.9
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 9.6e-21 103.2 67 80.6
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 9.6e-21 103.2 67 80.6
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 9.6e-21 103.2 67 82.1
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 1.3e-20 102.8 68 79.4
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 1.3e-20 102.8 67 80.6
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 1.3e-20 102.8 67 83.6
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 1.6e-20 102.4 67 82.1
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 1.6e-20 102.4 67 80.6
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 1.6e-20 102.4 67 80.6
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 1.6e-20 102.4 67 82.1
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 2.1e-20 102.1 67 79.1
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 2.8e-20 101.7 67 79.1
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 2.8e-20 101.7 67 80.6
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 4.8e-20 100.9 67 79.1
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 4.8e-20 100.9 67 79.1
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 4.8e-20 100.9 67 80.6
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 4.8e-20 100.9 67 80.6
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 4.8e-20 100.9 67 79.1
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 6.2e-20 100.5 67 77.6
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 8.1e-20 100.1 67 79.1
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 8.1e-20 100.1 67 77.6
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.1e-19 99.8 67 79.1
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 1.1e-19 99.8 67 79.1
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 1.1e-19 99.8 67 79.1
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 1.4e-19 99.4 67 79.1
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.4e-19 99.4 67 79.1
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 1.4e-19 99.4 67 77.6
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 1.4e-19 99.4 67 76.1
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 1.8e-19 99.0 67 77.6
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.8e-19 99.0 67 77.6
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 1.8e-19 99.0 67 79.1
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 1.8e-19 99.0 67 79.1
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 2.4e-19 98.6 67 79.1
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.4e-19 98.6 67 79.1
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 2.4e-19 98.6 67 76.1
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 2.4e-19 98.6 67 79.1
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 2.4e-19 98.6 67 77.6
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 3.1e-19 98.2 67 79.1
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 5.3e-19 97.4 67 74.6
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 9.0e-19 96.7 67 74.6
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 9.0e-19 96.7 67 76.1
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.2e-18 96.3 67 76.1
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.2e-18 96.3 67 76.1
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 1.5e-18 95.9 67 76.1
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 2.0e-18 95.5 67 76.1
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 2.0e-18 95.5 68 76.5
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 2.0e-18 95.5 67 74.6
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.6e-18 95.1 67 74.6
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 2.6e-18 95.1 67 76.1
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 2.6e-18 95.1 67 74.6
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 3.4e-18 94.7 67 74.6
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 3.4e-18 94.7 67 73.1
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 4.5e-18 94.4 67 74.6
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 4.5e-18 94.4 67 74.6
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.3e-17 92.8 67 73.1
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 1.7e-17 92.4 67 71.6
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 6.5e-17 90.5 60 78.3
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 8.4e-17 90.1 67 68.7
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.1e-16 89.7 67 71.6
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 1.1e-16 89.7 57 82.5
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 1.1e-16 89.7 57 82.5
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 1.1e-16 89.7 57 82.5
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 1.1e-16 89.7 57 82.5
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 1.1e-16 89.7 57 82.5
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.2e-15 86.3 54 83.3
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 1.2e-15 86.3 67 68.7
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 2.1e-15 85.5 53 84.9
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 2.1e-15 85.5 53 84.9
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 4.6e-15 84.3 67 70.1
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 3.0e-14 81.6 53 81.1
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 3.9e-14 81.3 64 65.6
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 6.7e-14 80.5 67 59.7
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 1.1e-13 79.7 64 64.1
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 1.9e-13 79.0 60 70.0
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 1.9e-13 79.0 68 58.8
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 2.1e-12 75.5 67 65.7
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 2.8e-12 75.1 67 58.2
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.1e-11 73.2 53 79.2
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 1.4e-11 72.8 54 72.2
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.1e-11 71.6 54 79.6
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 5.3e-11 70.9 46 80.4
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 2.0e-10 68.9 55 63.6
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 4.5e-10 67.8 49 69.4
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 7.6e-10 67.0 49 69.4
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 3.8e-09 64.7 65 53.8
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 3.8e-09 64.7 44 77.3
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 8.4e-09 63.5 71 59.2
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 1.4e-08 62.8 33 100.0
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 2.1e-07 58.9 55 50.9
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 6.1e-07 57.4 44 68.2
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 7.9e-07 57.0 55 60.0
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 1.0e-06 56.6 43 62.8


User provided reference genes

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