Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0065861 Rosa chinensis HOM05D006754 ORTHO05D008403 1.6e-230 802.4 401 100.0
FAN11G1342 Fragaria x ananassa HOM05D006754 ORTHO05D008403 1.3e-203 713.0 393 90.3
FvH4_3g36800 Fragaria vesca HOM05D006754 ORTHO05D008403 4.9e-203 711.1 392 90.3
FAN25G2379 Fragaria x ananassa HOM05D006754 ORTHO05D008403 2.5e-199 698.7 390 89.5
FAN16G0425 Fragaria x ananassa HOM05D006754 ORTHO05D008403 1.4e-197 693.0 397 88.4
MD03G1088200 Malus domestica HOM05D006754 ORTHO05D008403 3.0e-184 648.7 403 81.1
Prupe.6G072500 Prunus persica HOM05D006754 ORTHO05D008403 1.4e-178 629.8 386 81.9
QL01p030969 Quercus lobata HOM05D006754 ORTHO05D008403 7.7e-172 607.4 399 74.4
Thecc.09G318400 Theobroma cacao HOM05D006754 ORTHO05D008403 4.1e-165 585.1 399 72.7
FAN21G1313 Fragaria x ananassa HOM05D006754 ORTHO05D008403 3.5e-164 582.0 412 76.9
Atru.chr3.3972 Acer truncatum HOM05D006754 ORTHO05D008403 1.8e-160 569.7 402 72.1
COL.COLO4_18549 Corchorus olitorius HOM05D006754 ORTHO05D008403 3.0e-160 568.9 402 70.1
Gohir.A05G094100 Gossypium hirsutum HOM05D006754 ORTHO05D008403 5.2e-160 568.2 399 70.9
Gorai.009G097800 Gossypium raimondii HOM05D006754 ORTHO05D008403 8.8e-160 567.4 399 70.7
Haze_24130 Corylus avellana HOM05D006754 ORTHO05D008403 1.5e-159 566.6 399 72.7
Ciclev10030407m.g Citrus clementina HOM05D006754 ORTHO05D008403 4.4e-159 565.1 401 69.1
CiPaw.14G067200 Carya illinoinensis HOM05D006754 ORTHO05D008403 1.8e-157 559.7 399 71.2
CSS0030688 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 3.1e-157 558.9 402 68.7
CSS0026926 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 5.3e-157 558.1 401 68.3
TWI79G1092 Tripterygium wilfordii HOM05D006754 ORTHO05D008403 2.7e-156 555.8 401 67.6
Potri.009G033700 Populus trichocarpa HOM05D006754 ORTHO05D008403 3.5e-156 555.4 408 67.9
Potri.001G242400 Populus trichocarpa HOM05D006754 ORTHO05D008403 5.0e-155 551.6 403 69.2
Sabra16G0147200 Salix brachista HOM05D006754 ORTHO05D008403 3.2e-154 548.9 403 68.7
Cpa.g.sc81.116 Carica papaya HOM05D006754 ORTHO05D008403 2.7e-153 545.8 399 68.4
Glyma.15G221700 Glycine max HOM05D006754 ORTHO05D008403 5.9e-148 528.1 402 67.4
Manes.01G171100 Manihot esculenta HOM05D006754 ORTHO05D008403 2.2e-147 526.2 416 66.6
CsaV3_1G034490 Cucumis sativus L. HOM05D006754 ORTHO05D008403 6.5e-147 524.6 399 68.4
Glyma.08G227600 Glycine max HOM05D006754 ORTHO05D008403 1.1e-146 523.9 405 68.1
Hma1.2p1_0615F.1_g189790 Hydrangea macrophylla HOM05D006754 ORTHO05D008403 1.2e-145 520.4 415 66.0
Eucgr.B02322 Eucalyptus grandis HOM05D006754 ORTHO05D008403 2.1e-145 519.6 399 64.9
CANSAT56G3630 Cannabis sativa HOM05D006754 ORTHO05D008403 2.7e-145 519.2 396 67.9
VMungo1127G1194 Vigna mungo HOM05D006754 ORTHO05D008403 1.0e-144 517.3 403 65.8
ClCG03G001330 Citrullus lanatus HOM05D006754 ORTHO05D008403 1.2e-143 513.8 382 68.8
Psat4g178480 Pisum sativum HOM05D006754 ORTHO05D008403 1.5e-143 513.5 402 64.9
Lj3g0006516 Lotus japonicus HOM05D006754 ORTHO05D008403 4.4e-143 511.9 402 65.9
THA.LOC104799439 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 5.7e-143 511.5 399 66.2
Ca_24122_v3 Cicer arietinum L. HOM05D006754 ORTHO05D008403 2.8e-142 509.2 402 63.9
PGR102G0280 Punica granatum HOM05D006754 ORTHO05D008403 8.3e-142 507.7 402 64.2
Sed0002230 Sechium edule HOM05D006754 ORTHO05D008403 1.4e-141 506.9 394 65.5
Phvul.011G187300 Phaseolus vulgaris HOM05D006754 ORTHO05D008403 3.1e-141 505.8 402 66.2
Nn8g38772 Nelumbo nucifera HOM05D006754 ORTHO05D008403 4.5e-140 501.9 408 64.0
arahy.Tifrunner.gnm1.ann1.826T7K Arachis hypogaea HOM05D006754 ORTHO05D008403 1.5e-138 496.9 401 64.6
PSO339G3555 Papaver somniferum HOM05D006754 ORTHO05D008403 2.5e-138 496.1 405 64.0
Medtr8g044030 Medicago truncatula HOM05D006754 ORTHO05D008403 5.6e-138 495.0 423 60.5
AL8G35980 Arabidopsis lyrata HOM05D006754 ORTHO05D008403 8.0e-137 491.1 401 62.3
Sc12g0001320 Simmondsia chinensis HOM05D006754 ORTHO05D008403 8.0e-137 491.1 400 63.5
Thhalv10015639m.g Eutrema salsugineum HOM05D006754 ORTHO05D008403 1.4e-136 490.3 401 62.8
THA.LOC104814881 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 1.8e-136 490.0 403 61.3
Aqoxy2G02260 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 2.3e-136 489.6 402 64.9
AT5G59500 Arabidopsis thaliana HOM05D006754 ORTHO05D008403 4.0e-136 488.8 401 61.8
PSO063G1099 Papaver somniferum HOM05D006754 ORTHO05D008403 6.8e-136 488.0 403 63.0
Sp6g21200 Schrenkiella parvula HOM05D006754 ORTHO05D008403 6.8e-136 488.0 401 62.8
CARHR285870 Cardamine hirsuta HOM05D006754 ORTHO05D008403 8.9e-136 487.6 401 62.1
BraA10t43752Z Brassica rapa HOM05D006754 ORTHO05D008403 5.7e-135 485.0 399 63.4
Aa31LG1G11840 Aethionema arabicum HOM05D006754 ORTHO05D008403 1.3e-134 483.8 399 62.4
BcaC04g19764 Brassica carinata HOM05D006754 ORTHO05D008403 8.3e-134 481.1 399 62.7
C09p51900 Brassica napus HOM05D006754 ORTHO05D008403 8.3e-134 481.1 399 62.7
BolC9t58053H Brassica oleracea HOM05D006754 ORTHO05D008403 8.3e-134 481.1 399 62.7
Lj2P1066T40 Lonicera japonica HOM05D006754 ORTHO05D008403 1.1e-133 480.7 408 58.6
A10p16710 Brassica napus HOM05D006754 ORTHO05D008403 3.2e-133 479.2 399 62.4
Carub.0008s2018 Capsella rubella HOM05D006754 ORTHO05D008403 3.2e-133 479.2 403 62.5
DCAR_005953 Daucus carota HOM05D006754 ORTHO05D008403 7.0e-133 478.0 413 61.3
Solyc07g007700.3 Solanum lycopersicum HOM05D006754 ORTHO05D008403 5.9e-132 474.9 414 60.1
Ah.15g097770 Amaranthus hybridus HOM05D006754 ORTHO05D008403 7.8e-132 474.6 402 62.9
PGSC0003DMG400030707 Solanum tuberosum HOM05D006754 ORTHO05D008403 1.0e-131 474.2 410 60.5
Sopen07g003690 Solanum pennellii HOM05D006754 ORTHO05D008403 1.3e-131 473.8 325 69.2
Oeu026710.1 Olea europaea HOM05D006754 ORTHO05D008403 1.7e-131 473.4 428 60.3
BcaB08g36252 Brassica carinata HOM05D006754 ORTHO05D008403 1.1e-130 470.7 399 61.4
AUR62001757 Chenopodium quinoa HOM05D006754 ORTHO05D008403 1.1e-130 470.7 400 62.0
EL10Ac7g16047 Beta vulgaris HOM05D006754 ORTHO05D008403 3.6e-129 465.7 400 60.0
SalBow7G4834 Salvia bowleyana HOM05D006754 ORTHO05D008403 6.2e-129 464.9 411 61.3
Cc01_g13150 Coffea canephora HOM05D006754 ORTHO05D008403 1.0e-128 464.2 407 61.4
Migut.F00608 Erythranthe guttata HOM05D006754 ORTHO05D008403 1.0e-128 464.2 384 62.2
SalBow7G2225 Salvia bowleyana HOM05D006754 ORTHO05D008403 2.3e-128 463.0 411 61.1
CAN.G969.5 Capsicum annuum HOM05D006754 ORTHO05D008403 3.4e-127 459.1 389 60.2
Lsat_1_v5_gn_8_73421 Lactuca sativa HOM05D006754 ORTHO05D008403 1.7e-126 456.8 376 60.1
MSTRG.21206 Avicennia marina HOM05D006754 ORTHO05D008403 2.9e-126 456.1 340 67.6
HanXRQChr05g0135011 Helianthus annuus HOM05D006754 ORTHO05D008403 1.4e-125 453.8 377 60.2
AUR62009543 Chenopodium quinoa HOM05D006754 ORTHO05D008403 1.9e-125 453.4 400 60.8
Gohir.D05G094600 Gossypium hirsutum HOM05D006754 ORTHO05D008403 2.7e-124 449.5 328 68.3
Nitab4.5_0007132g0020 Nicotiana tabacum HOM05D006754 ORTHO05D008403 2.3e-123 446.4 286 74.5
Nitab4.5_0000272g0070 Nicotiana tabacum HOM05D006754 ORTHO05D008403 9.8e-119 431.0 269 76.6
Sed0016816 Sechium edule HOM05D006754 ORTHO05D008403 9.8e-119 431.0 399 56.6
Duzib168G0850 Durio zibethinus HOM05D006754 ORTHO05D008403 8.3e-118 427.9 245 80.8
unitig_37.g12673 Utricularia gibba HOM05D006754 ORTHO05D008403 2.4e-117 426.4 323 64.7
Peaxi162Scf00122g00144 Petunia axillaris HOM05D006754 ORTHO05D008403 2.1e-113 413.3 394 54.8
MBI14_g12133_MAGBIO Magnolia biondii HOM05D006754 ORTHO05D008403 8.1e-113 411.4 414 56.5
SGA_v2.0_scaffold51G18718 Striga asiatica HOM05D006754 ORTHO05D008403 1.8e-112 410.2 385 55.3
ATR0752G045 Amborella trichopoda HOM05D006754 ORTHO05D008403 1.5e-111 407.1 382 59.7
CDE04G0725 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 3.4e-111 406.0 323 61.0
Lalb_Chr01g0007611 Lupinus albus HOM05D006754 ORTHO05D008403 8.4e-110 401.4 399 54.6
CDE07G0060 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 3.9e-107 392.5 316 59.5
Dinv22095 Davidia involucrata HOM05D006754 ORTHO05D008403 3.6e-105 386.0 253 71.1
Oeu004165.1 Olea europaea HOM05D006754 ORTHO05D008403 1.1e-98 364.4 356 56.7
Dinv09390 Davidia involucrata HOM05D006754 ORTHO05D008403 1.7e-94 350.5 213 77.0
GSVIVG01024926001 Vitis vinifera HOM05D006754 ORTHO05D008403 1.3e-89 334.3 399 48.4
TPR.G35751 Trifolium pratense HOM05D006754 ORTHO05D008403 5.5e-85 318.9 402 47.5
ECA236G3563 Erigeron canadensis HOM05D006754 ORTHO05D008403 4.8e-65 252.7 149 75.8
Pp3c1_41830 Physcomitrium patens HOM05D006754 ORTHO05D008403 1.6e-60 237.7 307 40.1
Mapoly0044s0017 Marchantia polymorpha HOM05D006754 ORTHO05D008403 2.2e-54 217.2 312 39.1
C03p13670 Brassica napus HOM05D006754 ORTHO05D008403 3.6e-52 209.9 153 67.3
BolC3t13816H Brassica oleracea HOM05D006754 ORTHO05D008403 3.6e-52 209.9 153 67.3
Aqoxy2G02265 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 3.1e-48 196.8 217 53.0
AagrBONN_evm.TU.Sc2ySwM_368.2585 Anthoceros agrestis HOM05D006754 ORTHO05D008403 9.1e-48 195.3 306 37.9
HPP92_027965 Vanilla planifolia HOM05D006754 ORTHO05D008403 7.7e-47 192.2 244 47.1
SMO356G0015 Selaginella moellendorffii HOM05D006754 ORTHO05D008403 6.7e-43 179.1 271 37.6
Nn4g26458 Nelumbo nucifera HOM05D006754 ORTHO05D008403 3.3e-42 176.8 119 71.4
MD11G1097300 Malus domestica HOM05D006754 ORTHO05D008403 9.1e-40 168.7 199 51.3
BcaB05g22514 Brassica carinata HOM05D006754 ORTHO05D008403 5.0e-38 162.9 157 53.5
Dinv06263 Davidia involucrata HOM05D006754 ORTHO05D008403 9.8e-34 148.7 101 74.3
CBR_g46210 Chara braunii HOM05D006754 ORTHO05D008403 1.4e-27 128.3 225 34.2
HPP92_001678 Vanilla planifolia HOM05D006754 ORTHO05D008403 1.4e-24 118.2 184 40.8
SEGI_33641 Sequoiadendron giganteum HOM05D006754 ORTHO05D008403 5.2e-19 99.8 213 31.5
BcaC03g14007 Brassica carinata HOM05D006754 ORTHO05D008403 3.1e-11 73.9 94 48.9
C02p12450 Brassica napus HOM05D006754 ORTHO05D008403 1.2e-10 72.0 92 48.9
Cre01.g049750 Chlamydomonas reinhardtii HOM05D006754 ORTHO05D008403 2.0e-10 71.2 215 29.3


User provided reference genes

Program Settings