Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 8.7e-69 263.5 128 100.0
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.2e-62 243.0 131 92.4
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 1.6e-62 242.7 131 92.4
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.6e-62 242.7 131 92.4
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.6e-62 242.7 131 91.6
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 2.0e-57 225.7 131 84.0
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 2.6e-57 225.3 130 83.8
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 2.2e-56 222.2 127 86.6
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 3.8e-56 221.5 132 81.1
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 2.5e-55 218.8 129 83.7
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 4.2e-55 218.0 128 82.0
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 5.5e-55 217.6 126 81.0
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 9.3e-55 216.9 128 80.5
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 9.3e-55 216.9 127 80.3
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 1.6e-54 216.1 127 80.3
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 2.1e-54 215.7 129 81.4
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 6.0e-54 214.2 127 82.7
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 6.0e-54 214.2 127 81.9
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 7.9e-54 213.8 128 80.5
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 7.9e-54 213.8 133 78.9
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 7.9e-54 213.8 131 77.9
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 7.9e-54 213.8 131 77.9
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 7.9e-54 213.8 131 77.9
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 1.0e-53 213.4 127 83.5
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 1.0e-53 213.4 127 81.9
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 1.0e-53 213.4 127 78.7
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 1.8e-53 212.6 127 77.2
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 1.8e-53 212.6 132 77.3
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 3.0e-53 211.8 130 79.2
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 3.0e-53 211.8 127 79.5
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 3.0e-53 211.8 128 82.0
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.1e-53 211.1 132 77.3
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.1e-53 211.1 132 77.3
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.1e-53 211.1 132 77.3
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 5.1e-53 211.1 132 78.0
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 6.7e-53 210.7 128 81.2
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 8.7e-53 210.3 127 78.0
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 8.7e-53 210.3 127 82.7
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 8.7e-53 210.3 120 80.8
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 8.7e-53 210.3 135 74.8
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 8.7e-53 210.3 127 81.9
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 8.7e-53 210.3 127 82.7
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 1.1e-52 209.9 133 76.7
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 1.1e-52 209.9 127 79.5
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.5e-52 209.5 127 79.5
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 1.5e-52 209.5 128 78.1
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.5e-52 208.8 127 79.5
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.5e-52 208.8 132 76.5
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 2.5e-52 208.8 127 80.3
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 2.5e-52 208.8 132 77.3
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 3.3e-52 208.4 132 75.8
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 3.3e-52 208.4 132 75.8
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 3.3e-52 208.4 128 79.7
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 3.3e-52 208.4 128 79.7
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 4.3e-52 208.0 132 77.3
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 4.3e-52 208.0 127 75.6
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.7e-52 207.6 127 77.2
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 7.4e-52 207.2 127 79.5
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 7.4e-52 207.2 130 76.9
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 7.4e-52 207.2 127 74.8
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 9.6e-52 206.8 127 77.2
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 9.6e-52 206.8 128 78.1
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 1.3e-51 206.5 127 76.4
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 1.3e-51 206.5 127 74.0
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 1.3e-51 206.5 132 75.0
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 1.6e-51 206.1 129 76.0
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 2.1e-51 205.7 129 77.5
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 2.8e-51 205.3 130 76.9
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 2.8e-51 205.3 128 76.6
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 3.7e-51 204.9 127 77.2
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 4.8e-51 204.5 129 77.5
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 6.2e-51 204.1 128 75.0
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 6.2e-51 204.1 127 76.4
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 6.2e-51 204.1 136 74.3
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 6.2e-51 204.1 127 77.2
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 8.2e-51 203.8 124 77.4
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 8.2e-51 203.8 128 72.7
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 8.2e-51 203.8 128 74.2
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 8.2e-51 203.8 128 75.0
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 1.1e-50 203.4 130 77.7
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.4e-50 203.0 115 82.6
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 1.8e-50 202.6 128 75.8
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.8e-50 202.6 128 75.0
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.8e-50 202.6 129 76.7
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 2.4e-50 202.2 127 75.6
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 2.4e-50 202.2 127 77.2
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 3.1e-50 201.8 127 75.6
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 3.1e-50 201.8 128 74.2
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 4.1e-50 201.4 128 79.7
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 5.3e-50 201.1 128 79.7
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 9.0e-50 200.3 127 74.0
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 1.5e-49 199.5 135 71.9
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 2.0e-49 199.1 127 74.0
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 5.8e-49 197.6 120 80.8
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 7.6e-49 197.2 128 72.7
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 1.0e-48 196.8 130 73.8
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 1.7e-48 196.1 128 72.7
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.9e-48 195.3 127 74.0
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 2.9e-48 195.3 131 74.8
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 2.9e-48 195.3 147 68.7
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 3.8e-48 194.9 127 74.8
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 5.0e-48 194.5 128 70.3
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 5.0e-48 194.5 127 75.6
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 8.4e-48 193.7 132 72.0
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 8.4e-48 193.7 131 71.0
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.1e-47 193.4 115 80.0
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 1.4e-47 193.0 114 84.2
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.4e-47 193.0 128 69.5
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.9e-47 192.6 117 76.9
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 3.2e-47 191.8 133 68.4
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 3.2e-47 191.8 130 67.7
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 4.2e-47 191.4 129 69.8
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 7.1e-47 190.7 128 68.8
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 7.1e-47 190.7 129 71.3
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 9.3e-47 190.3 128 68.8
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.2e-46 189.9 129 69.0
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 1.6e-46 189.5 135 68.1
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 1.6e-46 189.5 135 68.9
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 2.1e-46 189.1 129 69.8
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 2.7e-46 188.7 129 69.0
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 2.7e-46 188.7 122 71.3
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 3.5e-46 188.3 135 66.7
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 4.6e-46 188.0 122 71.3
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 4.6e-46 188.0 122 71.3
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 4.6e-46 188.0 122 71.3
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 4.6e-46 188.0 122 70.5
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 4.6e-46 188.0 116 74.1
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 4.6e-46 188.0 129 71.3
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 6.1e-46 187.6 129 69.0
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 6.1e-46 187.6 129 69.0
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 6.1e-46 187.6 129 68.2
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 6.1e-46 187.6 129 68.2
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 6.1e-46 187.6 128 68.0
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 1.0e-45 186.8 129 68.2
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 1.8e-45 186.0 121 72.7
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 3.0e-45 185.3 103 80.6
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 5.1e-45 184.5 128 69.5
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 8.7e-45 183.7 137 70.1
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 8.7e-45 183.7 117 76.1
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 1.1e-44 183.3 125 72.0
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 7.4e-44 180.6 120 72.5
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 1.5e-41 172.9 120 68.3
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 2.0e-41 172.6 130 65.4
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 5.9e-41 171.0 137 65.7
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 1.1e-39 166.8 120 64.2
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 9.4e-39 163.7 103 68.0
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.0e-37 160.2 123 64.2
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 3.9e-37 158.3 91 80.2
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 2.4e-34 149.1 103 68.0
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.1e-31 140.2 116 58.6
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.4e-31 139.8 75 89.3
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 1.6e-30 136.3 78 80.8
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.2e-27 125.9 85 75.3
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 2.2e-24 115.9 73 76.7
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 5.2e-21 104.8 77 63.6
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.5e-20 103.2 73 64.4
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 2.0e-20 102.8 71 70.4
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 4.4e-20 101.7 56 87.5
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.3e-19 100.1 75 58.7
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.7e-19 99.8 60 78.3
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 1.5e-12 76.6 50 66.0
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 6.3e-11 71.2 60 61.7
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 4.1e-10 68.6 95 34.7
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 1.5e-07 60.1 43 62.8


User provided reference genes

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