Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0065291 Rosa chinensis HOM05D005220 ORTHO05D006082 1.2e-132 476.5 237 100.0
FAN25G3767 Fragaria x ananassa HOM05D005220 ORTHO05D006082 2.1e-113 412.5 239 87.9
FAN21G2192 Fragaria x ananassa HOM05D005220 ORTHO05D006082 3.7e-113 411.8 239 87.9
FAN11G0817 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.1e-112 410.2 239 87.0
FAN16G3714 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.1e-106 390.2 232 85.3
FvH4_3g36400 Fragaria vesca HOM05D005220 ORTHO05D006082 8.8e-75 284.3 168 84.5
Prupe.6G075200 Prunus persica HOM05D005220 ORTHO05D006082 1.0e-67 260.8 243 58.4
MD03G1090800 Malus domestica HOM05D005220 ORTHO05D006082 2.3e-54 216.5 204 55.4
MD00G1013500 Malus domestica HOM05D005220 ORTHO05D006082 3.8e-54 215.7 202 56.4
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.1e-24 117.9 189 39.7
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 2.4e-24 116.7 193 37.8
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 4.1e-24 115.9 180 38.9
Eucgr.I01975 Eucalyptus grandis HOM05D005220 ORTHO05D006082 1.6e-23 114.0 187 39.0
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 2.7e-23 113.2 186 38.2
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 5.1e-22 109.0 183 39.3
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 6.6e-22 108.6 188 37.2
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 8.6e-22 108.2 182 37.4
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 1.1e-21 107.8 172 36.6
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 4.3e-21 105.9 161 39.1
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 5.6e-21 105.5 200 36.0
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 5.6e-21 105.5 201 34.8
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 7.3e-21 105.1 186 34.4
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 3.6e-20 102.8 178 34.3
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 3.6e-20 102.8 185 34.6
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 4.7e-20 102.4 186 34.9
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 6.2e-20 102.1 184 36.4
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 6.2e-20 102.1 188 37.2
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 8.1e-20 101.7 170 37.6
Hund13159 Selenicereus undatus HOM05D005220 ORTHO05D006082 8.1e-20 101.7 142 44.4
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 1.8e-19 100.5 169 36.7
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.8e-19 100.5 177 37.3
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 3.1e-19 99.8 155 38.1
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 1.2e-18 97.8 170 37.1
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 1.5e-18 97.4 178 34.8
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 2.0e-18 97.1 180 34.4
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 2.6e-18 96.7 177 35.0
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 2.6e-18 96.7 182 33.5
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.3e-17 94.4 171 33.9
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 1.7e-17 94.0 160 36.2
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 4.9e-17 92.4 186 34.9
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 8.4e-17 91.7 190 34.2
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 4.2e-16 89.4 189 33.9
HanXRQChr14g0448751 Helianthus annuus HOM05D005220 ORTHO05D006082 9.3e-16 88.2 189 33.9
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 9.3e-16 88.2 139 37.4
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 1.2e-15 87.8 161 35.4
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 1.6e-15 87.4 120 40.0
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 1.6e-15 87.4 171 37.4
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 2.1e-15 87.0 119 40.3
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 2.7e-15 86.7 171 32.2
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 4.6e-15 85.9 128 39.8
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 4.6e-15 85.9 166 35.5
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.6e-15 85.9 178 34.8
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 7.8e-15 85.1 144 36.8
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 1.0e-14 84.7 166 34.9
FAN08G2293 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.0e-14 84.7 148 35.8
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.0e-14 84.7 166 34.9
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 1.0e-14 84.7 125 40.0
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 1.3e-14 84.3 131 39.7
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 1.3e-14 84.3 168 33.9
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.3e-14 84.3 133 36.1
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.3e-14 84.3 118 39.0
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 1.7e-14 84.0 103 41.7
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.7e-14 84.0 132 34.8
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 2.3e-14 83.6 139 39.6
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 3.0e-14 83.2 188 33.0
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 5.1e-14 82.4 134 37.3
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 5.1e-14 82.4 127 38.6
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 6.6e-14 82.0 169 32.5
RcHm_v2.0_Chr7g0182621 Rosa chinensis HOM05D005220 ORTHO05D006082 8.7e-14 81.6 116 41.4
Ca_13809_v3 Cicer arietinum L. HOM05D005220 ORTHO05D006082 1.1e-13 81.3 128 39.1
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 1.1e-13 81.3 170 32.9
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 1.5e-13 80.9 130 33.8
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.5e-13 80.9 144 35.4
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 2.5e-13 80.1 164 33.5
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 3.3e-13 79.7 123 39.0
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 4.3e-13 79.3 143 35.0
MD14G1208900 Malus domestica HOM05D005220 ORTHO05D006082 4.3e-13 79.3 130 37.7
Psat7g133400 Pisum sativum HOM05D005220 ORTHO05D006082 7.3e-13 78.6 114 39.5
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 9.6e-13 78.2 113 38.9
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 9.6e-13 78.2 113 38.9
AL5G19390 Arabidopsis lyrata HOM05D005220 ORTHO05D006082 1.3e-12 77.8 121 37.2
Lsat_1_v5_gn_5_21940 Lactuca sativa HOM05D005220 ORTHO05D006082 1.3e-12 77.8 118 38.1
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 2.1e-12 77.0 132 37.1
SalBow1G1470 Salvia bowleyana HOM05D005220 ORTHO05D006082 2.1e-12 77.0 168 31.5
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 2.8e-12 76.6 124 37.1
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 2.8e-12 76.6 127 38.6
PGSC0003DMG400025138 Solanum tuberosum HOM05D005220 ORTHO05D006082 2.8e-12 76.6 165 33.3
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 3.6e-12 76.3 145 35.2
MSTRG.23894 Avicennia marina HOM05D005220 ORTHO05D006082 4.8e-12 75.9 197 29.4
CsaV3_1G002740 Cucumis sativus L. HOM05D005220 ORTHO05D006082 4.8e-12 75.9 124 34.7
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 4.8e-12 75.9 131 35.9
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 4.8e-12 75.9 129 36.4
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 6.2e-12 75.5 139 36.0
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 6.2e-12 75.5 133 34.6
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 6.2e-12 75.5 125 35.2
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 8.1e-12 75.1 122 36.9
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 8.1e-12 75.1 129 37.2
Duzib205G0201 Durio zibethinus HOM05D005220 ORTHO05D006082 1.1e-11 74.7 153 33.3
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 1.4e-11 74.3 139 35.3
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 1.8e-11 73.9 103 36.9
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 1.8e-11 73.9 122 34.4
ECA238G3864 Erigeron canadensis HOM05D005220 ORTHO05D006082 2.4e-11 73.6 176 31.8
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 3.1e-11 73.2 103 35.9
EL10Ac5g11101 Beta vulgaris HOM05D005220 ORTHO05D006082 3.1e-11 73.2 182 31.9
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 4.0e-11 72.8 181 30.9
COL.COLO4_22223 Corchorus olitorius HOM05D005220 ORTHO05D006082 4.0e-11 72.8 110 39.1
HanXRQChr05g0157201 Helianthus annuus HOM05D005220 ORTHO05D006082 5.3e-11 72.4 96 35.4
Sopen02g016260 Solanum pennellii HOM05D005220 ORTHO05D006082 6.9e-11 72.0 171 32.7
HPP92_020440 Vanilla planifolia HOM05D005220 ORTHO05D006082 1.2e-10 71.2 168 31.5
Solyc02g067070.4 Solanum lycopersicum HOM05D005220 ORTHO05D006082 1.5e-10 70.9 171 32.2
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 2.0e-10 70.5 180 28.3
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 2.0e-10 70.5 124 35.5
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 2.0e-10 70.5 144 29.2
arahy.Tifrunner.gnm1.ann1.XVT01H Arachis hypogaea HOM05D005220 ORTHO05D006082 2.6e-10 70.1 186 28.0
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 2.6e-10 70.1 119 34.5
ATR0681G067 Amborella trichopoda HOM05D005220 ORTHO05D006082 3.4e-10 69.7 150 31.3
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 4.4e-10 69.3 110 37.3
HanXRQChr14g0426851 Helianthus annuus HOM05D005220 ORTHO05D006082 5.8e-10 68.9 115 35.7
Os10g0324600 Oryza sativa ssp. japonica HOM05D005220 ORTHO05D006082 5.8e-10 68.9 131 31.3
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 1.3e-09 67.8 144 28.5
Thhalv10005570m.g Eutrema salsugineum HOM05D005220 ORTHO05D006082 1.7e-09 67.4 123 34.1
Lsat_1_v5_gn_5_21960 Lactuca sativa HOM05D005220 ORTHO05D006082 2.9e-09 66.6 107 32.7
SGA_v2.0_scaffold52G19178 Striga asiatica HOM05D005220 ORTHO05D006082 2.9e-09 66.6 149 29.5
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 3.8e-09 66.2 137 34.3
Migut.H00644 Erythranthe guttata HOM05D005220 ORTHO05D006082 3.8e-09 66.2 67 55.2
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 3.8e-09 66.2 144 29.2
Dinv38787 Davidia involucrata HOM05D005220 ORTHO05D006082 3.2e-08 63.2 77 48.1
CAN.G979.11 Capsicum annuum HOM05D005220 ORTHO05D006082 7.1e-08 62.0 180 29.4
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 1.2e-07 61.2 111 29.7
Gohir.A12G180900 Gossypium hirsutum HOM05D005220 ORTHO05D006082 6.0e-07 58.9 115 32.2
Medtr5g097950 Medicago truncatula HOM05D005220 ORTHO05D006082 7.9e-07 58.5 117 31.6
THA.LOC104818515 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 3.9e-06 56.2 93 40.9


User provided reference genes

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