Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0064811 Rosa chinensis HOM05D004676 ORTHO05D005661 2.0e-119 432.6 236 100.0
RcHm_v2.0_Chr5g0064551 Rosa chinensis HOM05D004676 ORTHO05D005661 1.8e-51 206.8 175 70.9
RcHm_v2.0_Chr5g0064841 Rosa chinensis HOM05D004676 ORTHO05D005661 9.4e-45 184.5 141 70.2
FvH4_3g36120 Fragaria vesca HOM05D002246 ORTHO05D002308 1.1e-40 171.0 179 62.6
FAN11G1736 Fragaria x ananassa HOM05D002246 ORTHO05D002308 1.3e-38 164.1 179 61.5
RcHm_v2.0_Chr5g0064541 Rosa chinensis HOM05D004676 ORTHO05D005661 7.2e-37 158.3 180 57.2
FAN11G0391 Fragaria x ananassa HOM05D004676 ORTHO05D005661 2.1e-36 156.8 182 55.5
FAN16G2805 Fragaria x ananassa HOM05D004676 ORTHO05D005661 3.6e-36 156.0 182 55.5
FAN25G1996 Fragaria x ananassa HOM05D004676 ORTHO05D005661 1.8e-35 153.7 182 54.9
Prupe.6G077300 Prunus persica HOM05D004676 ORTHO05D005661 1.8e-35 153.7 189 54.0
FvH4_3g36111 Fragaria vesca HOM05D004676 ORTHO05D005661 3.0e-35 152.9 182 54.9
FAN21G2159 Fragaria x ananassa HOM05D004676 ORTHO05D005661 5.7e-34 148.7 184 54.3
Haze_24097 Corylus avellana HOM05D004676 ORTHO05D005661 6.6e-30 135.2 184 50.5
Sc21g0005490 Simmondsia chinensis HOM05D004676 ORTHO05D005661 8.6e-30 134.8 181 51.4
TAR633G1457 Trochodendron aralioides HOM05D004676 ORTHO05D005661 3.3e-29 132.9 186 48.4
CsaV3_6G016860 Cucumis sativus L. HOM05D004676 ORTHO05D005661 5.6e-29 132.1 185 49.2
TAR588G0001 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.2e-28 131.0 197 46.7
Actinidia23939 Actinidia chinensis HOM05D004676 ORTHO05D005661 1.6e-28 130.6 138 52.9
Cfa011505 Carpinus fangiana HOM05D004676 ORTHO05D005661 2.1e-28 130.2 185 50.3
MD03G1093300 Malus domestica HOM05D004676 ORTHO05D005661 2.1e-28 130.2 181 48.6
CiPaw.13G094200 Carya illinoinensis HOM05D004676 ORTHO05D005661 6.2e-28 128.6 185 48.6
Haze_12047 Corylus avellana HOM05D004676 ORTHO05D005661 8.0e-28 128.3 185 50.8
MELO3C025917.2 Cucumis melo HOM05D004676 ORTHO05D005661 1.0e-27 127.9 175 50.3
HanXRQChr01g0009481 Helianthus annuus HOM05D004676 ORTHO05D005661 1.4e-27 127.5 174 50.6
Atru.chr3.3906 Acer truncatum HOM05D004676 ORTHO05D005661 1.8e-27 127.1 187 48.1
Ah.04g160390 Amaranthus hybridus HOM05D004676 ORTHO05D005661 2.3e-27 126.7 174 51.7
Cpa.g.sc161.42 Carica papaya HOM05D004676 ORTHO05D005661 6.8e-27 125.2 172 51.2
MD11G1108100 Malus domestica HOM05D004676 ORTHO05D005661 8.9e-27 124.8 175 48.6
CiPaw.14G068300 Carya illinoinensis HOM05D004676 ORTHO05D005661 1.2e-26 124.4 187 48.7
Thecc.09G321600 Theobroma cacao HOM05D004676 ORTHO05D005661 1.2e-26 124.4 180 51.1
ClCG02G020150 Citrullus lanatus HOM05D004676 ORTHO05D005661 1.5e-26 124.0 137 52.6
QL09p008735 Quercus lobata HOM05D004676 ORTHO05D005661 1.5e-26 124.0 139 51.8
TAR100G0004 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.5e-26 124.0 237 40.1
Dinv12426 Davidia involucrata HOM05D004676 ORTHO05D005661 2.0e-26 123.6 180 51.7
Peaxi162Scf00045g00052 Petunia axillaris HOM05D004676 ORTHO05D005661 3.4e-26 122.9 187 51.3
Actinidia34405 Actinidia chinensis HOM05D004676 ORTHO05D005661 5.8e-26 122.1 130 52.3
Ciclev10028807m.g Citrus clementina HOM05D004676 ORTHO05D005661 5.8e-26 122.1 189 48.1
Nn1g00565 Nelumbo nucifera HOM05D004676 ORTHO05D005661 7.5e-26 121.7 187 48.1
AUR62000799 Chenopodium quinoa HOM05D004676 ORTHO05D005661 1.3e-25 120.9 173 49.7
Nitab4.5_0005880g0060 Nicotiana tabacum HOM05D004676 ORTHO05D005661 2.2e-25 120.2 185 51.9
AUR62005169 Chenopodium quinoa HOM05D004676 ORTHO05D005661 2.9e-25 119.8 173 49.1
Hma1.2p1_0418F.1_g149200 Hydrangea macrophylla HOM05D004676 ORTHO05D005661 3.7e-25 119.4 140 56.4
Manes.02G133000 Manihot esculenta HOM05D004676 ORTHO05D005661 3.7e-25 119.4 126 49.2
ECA248G3797 Erigeron canadensis HOM05D004676 ORTHO05D005661 4.9e-25 119.0 174 48.9
Potri.001G148000 Populus trichocarpa HOM05D004676 ORTHO05D005661 4.9e-25 119.0 176 50.0
Gohir.D07G102900 Gossypium hirsutum HOM05D004676 ORTHO05D005661 6.4e-25 118.6 180 48.3
Gorai.001G110800 Gossypium raimondii HOM05D004676 ORTHO05D005661 6.4e-25 118.6 180 48.3
Sed0011846 Sechium edule HOM05D004676 ORTHO05D005661 6.4e-25 118.6 179 47.5
Gohir.A07G098600 Gossypium hirsutum HOM05D004676 ORTHO05D005661 8.3e-25 118.2 184 47.8
SGA_v2.0_scaffold154G37155 Striga asiatica HOM05D004676 ORTHO05D005661 1.1e-24 117.9 183 46.4
Manes.01G173800 Manihot esculenta HOM05D004676 ORTHO05D005661 1.4e-24 117.5 178 50.6
Rhsim01G0227600 Rhododendron simsii HOM05D004676 ORTHO05D005661 1.4e-24 117.5 182 48.4
Lj1P153T22 Lonicera japonica HOM05D004676 ORTHO05D005661 1.9e-24 117.1 174 47.1
Nitab4.5_0003154g0010 Nicotiana tabacum HOM05D004676 ORTHO05D005661 1.9e-24 117.1 185 49.7
SHI01165 Sapria himalayana HOM05D004676 ORTHO05D005661 1.9e-24 117.1 192 40.1
Duzib168G2248 Durio zibethinus HOM05D004676 ORTHO05D005661 2.4e-24 116.7 175 48.6
TAR677G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 2.4e-24 116.7 237 38.8
Hund18907 Selenicereus undatus HOM05D004676 ORTHO05D005661 3.2e-24 116.3 187 47.1
THA.LOC104800662 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 3.2e-24 116.3 170 48.8
THA.LOC104826325 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 3.2e-24 116.3 183 47.0
unitig_0.g1557 Utricularia gibba HOM05D004676 ORTHO05D005661 4.1e-24 115.9 176 46.6
Nitab4.5_0001424g0070 Nicotiana tabacum HOM05D004676 ORTHO05D005661 7.0e-24 115.2 184 50.5
Oeu019194.1 Olea europaea HOM05D004676 ORTHO05D005661 9.2e-24 114.8 181 48.6
Carub.0004s0990 Capsella rubella HOM05D004676 ORTHO05D005661 1.2e-23 114.4 170 48.2
Solyc08g005450.3 Solanum lycopersicum HOM05D004676 ORTHO05D005661 1.2e-23 114.4 181 51.4
Migut.L00671 Erythranthe guttata HOM05D004676 ORTHO05D005661 1.6e-23 114.0 179 48.0
Lsat_1_v5_gn_5_170600 Lactuca sativa HOM05D004676 ORTHO05D005661 1.6e-23 114.0 131 48.9
Sopen08g001490 Solanum pennellii HOM05D004676 ORTHO05D005661 2.7e-23 113.2 181 50.8
PGSC0003DMG400018489 Solanum tuberosum HOM05D004676 ORTHO05D005661 2.7e-23 113.2 181 50.3
SGA_v2.0_scaffold47G17549 Striga asiatica HOM05D004676 ORTHO05D005661 2.7e-23 113.2 193 46.1
Aa31LG5G7310 Aethionema arabicum HOM05D004676 ORTHO05D005661 3.5e-23 112.8 180 45.0
Cpa.g.sc81.149 Carica papaya HOM05D004676 ORTHO05D005661 3.5e-23 112.8 188 47.3
Migut.L00698 Erythranthe guttata HOM05D004676 ORTHO05D005661 3.5e-23 112.8 181 48.6
Sabra01G0116300 Salix brachista HOM05D004676 ORTHO05D005661 3.5e-23 112.8 190 41.6
Sabra01G0117800 Salix brachista HOM05D004676 ORTHO05D005661 4.6e-23 112.5 204 39.7
TWI75G1679 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 4.6e-23 112.5 148 47.3
AT2G28910 Arabidopsis thaliana HOM05D004676 ORTHO05D005661 7.8e-23 111.7 170 47.6
CAN.G137.34 Capsicum annuum HOM05D004676 ORTHO05D005661 1.0e-22 111.3 179 49.2
Oeu051436.2 Olea europaea HOM05D004676 ORTHO05D005661 1.0e-22 111.3 140 47.9
TWI79G0464 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 1.0e-22 111.3 195 45.1
vmacro05212 Vaccinium macrocarpon HOM05D004676 ORTHO05D005661 1.0e-22 111.3 143 46.9
Psat0s2898g0040 Pisum sativum HOM05D004676 ORTHO05D005661 1.3e-22 110.9 186 46.8
CARHR122080 Cardamine hirsuta HOM05D004676 ORTHO05D005661 2.3e-22 110.2 170 46.5
Thecc.09G321800 Theobroma cacao HOM05D004676 ORTHO05D005661 2.3e-22 110.2 174 47.7
CANSAT21G2535 Cannabis sativa HOM05D004676 ORTHO05D005661 3.0e-22 109.8 192 45.8
EL10Ac4g09397 Beta vulgaris HOM05D004676 ORTHO05D005661 3.9e-22 109.4 175 46.9
Migut.D02100 Erythranthe guttata HOM05D004676 ORTHO05D005661 3.9e-22 109.4 177 46.3
SEGI_40255 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 5.0e-22 109.0 151 42.4
PGR119G2251 Punica granatum HOM05D004676 ORTHO05D005661 8.6e-22 108.2 179 47.5
Sp4g11720 Schrenkiella parvula HOM05D004676 ORTHO05D005661 8.6e-22 108.2 170 45.9
Aqoxy7G03598 Aquilegia oxysepala HOM05D004676 ORTHO05D005661 1.5e-21 107.5 190 45.3
Lalb_Chr02g0143571 Lupinus albus HOM05D004676 ORTHO05D005661 1.5e-21 107.5 174 46.0
unitig_747.g22032 Utricularia gibba HOM05D004676 ORTHO05D005661 1.5e-21 107.5 200 43.0
AL4G23440 Arabidopsis lyrata HOM05D004676 ORTHO05D005661 1.9e-21 107.1 170 47.6
Cc01_g12890 Coffea canephora HOM05D004676 ORTHO05D005661 1.9e-21 107.1 140 52.1
BcaC02g11024 Brassica carinata HOM05D004676 ORTHO05D005661 2.5e-21 106.7 171 48.5
C04p22070 Brassica napus HOM05D004676 ORTHO05D005661 2.5e-21 106.7 171 48.5
BolC4t23730H Brassica oleracea HOM05D004676 ORTHO05D005661 2.5e-21 106.7 171 48.5
DCAR_024536 Daucus carota HOM05D004676 ORTHO05D005661 2.5e-21 106.7 188 37.8
MBI14_g16284_MAGBIO Magnolia biondii HOM05D004676 ORTHO05D005661 3.3e-21 106.3 188 43.6
Phvul.007G016200 Phaseolus vulgaris HOM05D004676 ORTHO05D005661 3.3e-21 106.3 174 45.4
Glyma.20G104700 Glycine max HOM05D004676 ORTHO05D005661 7.3e-21 105.1 173 45.1
TPR.G18864 Trifolium pratense HOM05D004676 ORTHO05D005661 1.2e-20 104.4 187 44.4
Eucgr.E01963 Eucalyptus grandis HOM05D004676 ORTHO05D005661 1.6e-20 104.0 191 45.0
Eucgr.E01882 Eucalyptus grandis HOM05D004676 ORTHO05D005661 2.8e-20 103.2 223 41.7
CDE04G1893 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 3.6e-20 102.8 177 43.5
arahy.Tifrunner.gnm1.ann1.ID2MIU Arachis hypogaea HOM05D004676 ORTHO05D005661 4.7e-20 102.4 185 43.8
BcaB02g10212 Brassica carinata HOM05D004676 ORTHO05D005661 4.7e-20 102.4 172 45.9
A07p19390 Brassica napus HOM05D004676 ORTHO05D005661 6.2e-20 102.1 171 47.4
CDE07G0255 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 6.2e-20 102.1 191 44.5
PSO339G5531 Papaver somniferum HOM05D004676 ORTHO05D005661 8.1e-20 101.7 193 45.1
PSO151G0082 Papaver somniferum HOM05D004676 ORTHO05D005661 1.1e-19 101.3 186 45.7
Glyma.10G284600 Glycine max HOM05D004676 ORTHO05D005661 1.4e-19 100.9 173 45.1
ECA233G5350 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.8e-19 100.5 180 42.8
Lj5g0019317 Lotus japonicus HOM05D004676 ORTHO05D005661 1.8e-19 100.5 138 44.2
BolC4t27336H Brassica oleracea HOM05D004676 ORTHO05D005661 3.1e-19 99.8 171 46.8
Lalb_Chr06g0163861 Lupinus albus HOM05D004676 ORTHO05D005661 3.1e-19 99.8 184 40.2
A04p05090 Brassica napus HOM05D004676 ORTHO05D005661 4.0e-19 99.4 164 43.9
A04p21940 Brassica napus HOM05D004676 ORTHO05D005661 4.0e-19 99.4 164 43.9
BraA04t17761Z Brassica rapa HOM05D004676 ORTHO05D005661 4.0e-19 99.4 164 43.9
Ca_11220_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 4.0e-19 99.4 186 42.5
DCAR_025381 Daucus carota HOM05D004676 ORTHO05D005661 4.0e-19 99.4 185 44.9
ATR0733G034 Amborella trichopoda HOM05D004676 ORTHO05D005661 8.9e-19 98.2 191 41.4
Eucgr.J02052 Eucalyptus grandis HOM05D004676 ORTHO05D005661 8.9e-19 98.2 141 46.1
Ca_09918_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 4.4e-18 95.9 187 42.8
Eucgr.E01961 Eucalyptus grandis HOM05D004676 ORTHO05D005661 4.4e-18 95.9 129 49.6
VMungo0720G1898 Vigna mungo HOM05D004676 ORTHO05D005661 7.5e-18 95.1 184 42.9
BraA07t29644Z Brassica rapa HOM05D004676 ORTHO05D005661 1.3e-17 94.4 118 53.4
TAR383G0008 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.7e-17 94.0 237 36.7
TAR455G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.7e-17 94.0 237 36.7
HPP92_003385 Vanilla planifolia HOM05D004676 ORTHO05D005661 2.2e-17 93.6 142 47.9
HPP92_003389 Vanilla planifolia HOM05D004676 ORTHO05D005661 2.9e-17 93.2 180 43.3
TAR625G0807 Trochodendron aralioides HOM05D004676 ORTHO05D005661 8.3e-17 91.7 188 38.8
Pp3c8_12040 Physcomitrium patens HOM05D004676 ORTHO05D005661 1.4e-16 90.9 194 36.6
Zm00001eb095710 Zea mays HOM05D004676 ORTHO05D005661 3.2e-16 89.7 48 81.2
Zm00001eb307410 Zea mays HOM05D004676 ORTHO05D005661 3.2e-16 89.7 48 81.2
Os09g0103700 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 1.6e-15 87.4 127 49.6
CBR_g53496 Chara braunii HOM05D004676 ORTHO05D137281 4.6e-15 85.9 72 55.6
Mapoly0006s0051 Marchantia polymorpha HOM05D004676 ORTHO05D005661 6.0e-15 85.5 115 50.4
AagrBONN_evm.TU.Sc2ySwM_228.4612 Anthoceros agrestis HOM05D004676 ORTHO05D005661 3.0e-14 83.2 161 41.0
BcaC02g08125 Brassica carinata HOM05D004676 ORTHO05D005661 3.0e-14 83.2 113 47.8
COL.COLO4_18509 Corchorus olitorius HOM05D004676 ORTHO05D005661 6.6e-14 82.0 99 47.5
Os05g0297400 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 4.3e-13 79.3 123 41.5
SMO117G0168 Selaginella moellendorffii HOM05D004676 ORTHO05D005661 6.8e-11 72.0 110 43.6
ECA247G4102 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.6e-07 60.8 84 40.5
SEGI_06382 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 1.6e-07 60.8 40 65.0
ECA233G0017 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.7e-07 60.1 190 34.2
ECA233G0785 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.7e-07 60.1 180 33.3
C04p58100 Brassica napus HOM05D004676 ORTHO05D005661 4.6e-07 59.3 93 44.1


User provided reference genes

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