Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0064801 Rosa chinensis HOM05D007314 ORTHO05D003768 7.2e-228 793.5 380 100.0
RcHm_v2.0_Chr3g0458231 Rosa chinensis HOM05D007314 ORTHO05D003768 2.1e-211 738.8 361 98.1
RcHm_v2.0_Chr3g0460621 Rosa chinensis HOM05D007314 ORTHO05D003768 1.1e-138 497.3 362 66.6
FvH4_4g01311 Fragaria vesca HOM05D007314 ORTHO05D003768 7.2e-79 298.5 223 64.1
FvH4_4g12371 Fragaria vesca HOM05D007314 ORTHO05D003768 4.4e-76 289.3 339 46.9
C09p36000 Brassica napus HOM05D007314 ORTHO05D003768 5.4e-58 229.2 304 40.5
RcHm_v2.0_Chr7g0200591 Rosa chinensis HOM05D007314 ORTHO05D003768 7.5e-52 208.8 146 65.8
RcHm_v2.0_Chr3g0492801 Rosa chinensis HOM05D007314 ORTHO05D003768 1.2e-49 201.4 143 67.8
RcHm_v2.0_Chr4g0444771 Rosa chinensis HOM05D007314 ORTHO05D003768 4.9e-43 179.5 158 60.1
RcHm_v2.0_Chr7g0177401 Rosa chinensis HOM05D007314 ORTHO05D003768 1.2e-33 148.3 72 94.4
ClCG05G014410 Citrullus lanatus HOM05D007314 ORTHO05D003768 6.2e-30 136.0 97 61.9
MELO3C028271.2 Cucumis melo HOM05D007314 ORTHO05D003768 8.1e-30 135.6 93 61.3
MELO3C028846.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.8e-29 134.4 90 62.2
RcHm_v2.0_Chr5g0059371 Rosa chinensis HOM05D007314 ORTHO05D003768 2.4e-29 134.0 86 74.4
ClCG07G007700 Citrullus lanatus HOM05D007314 ORTHO05D003768 4.0e-29 133.3 97 61.9
MELO3C027594.2 Cucumis melo HOM05D007314 ORTHO05D003768 9.0e-29 132.1 90 61.1
MELO3C028434.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.4e-28 130.2 90 63.3
CsaV3_3G006830 Cucumis sativus L. HOM05D007314 ORTHO05D003768 4.4e-28 129.8 166 41.0
Sed0011740 Sechium edule HOM05D007314 ORTHO05D003768 1.7e-27 127.9 97 57.7
MELO3C001336.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.2e-26 123.6 90 60.0
MELO3C029981.2 Cucumis melo HOM05D007314 ORTHO05D003768 7.1e-26 122.5 85 62.4
MELO3C035305.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.1e-25 120.9 85 62.4
CANSAT25G2929 Cannabis sativa HOM05D007314 ORTHO05D003768 7.8e-25 119.0 133 40.6
MELO3C030144.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.9e-24 116.7 86 58.1
MELO3C031887.2 Cucumis melo HOM05D007314 ORTHO05D003768 5.1e-24 116.3 106 50.9
CANSAT35G0660 Cannabis sativa HOM05D007314 ORTHO05D003768 8.7e-24 115.5 160 36.2
MELO3C035542.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.9e-23 114.4 90 60.0
MELO3C032718.2 Cucumis melo HOM05D007314 ORTHO05D003768 4.8e-22 109.8 105 48.6
MELO3C029040.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.1e-21 108.6 69 65.2
FvH4_6g21082 Fragaria vesca HOM05D007314 ORTHO05D003768 5.3e-21 106.3 96 54.2
MELO3C008679.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.0e-20 104.4 102 49.0
MELO3C030512.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.0e-20 104.4 84 56.0
MELO3C029411.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.7e-19 101.3 99 49.5
MELO3C032996.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.8e-19 100.1 85 54.1
CsaV3_4G009050 Cucumis sativus L. HOM05D007314 ORTHO05D003768 4.9e-19 99.8 84 53.6
MELO3C035437.2 Cucumis melo HOM05D007314 ORTHO05D003768 6.4e-19 99.4 74 58.1
MELO3C030644.2 Cucumis melo HOM05D007314 ORTHO05D003768 8.4e-19 99.0 77 57.1
CsaV3_7G021120 Cucumis sativus L. HOM05D007314 ORTHO05D003768 1.1e-18 98.6 65 63.1
Sed0009392 Sechium edule HOM05D007314 ORTHO05D003768 1.4e-18 98.2 90 51.1
MELO3C029734.2 Cucumis melo HOM05D007314 ORTHO05D003768 9.6e-15 85.5 106 44.3
BolC2t08290H Brassica oleracea HOM05D007314 ORTHO05D003768 3.7e-14 83.6 120 43.3
CANSAT25G1818 Cannabis sativa HOM05D007314 ORTHO05D003768 6.2e-14 82.8 125 33.6
MELO3C033672.2 Cucumis melo HOM05D007314 ORTHO05D003768 5.3e-13 79.7 56 62.5
BolC3t20566H Brassica oleracea HOM05D007314 ORTHO05D003768 2.0e-12 77.8 94 39.4
CSS0040185 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 3.4e-12 77.0 74 50.0
CSS0045228 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 4.5e-12 76.6 74 48.6
Rhsim02G0146100 Rhododendron simsii HOM05D000539 ORTHO05D000233 4.5e-12 76.6 210 28.1
BolC2t10485H Brassica oleracea HOM05D007314 ORTHO05D003768 1.3e-11 75.1 102 37.3
MELO3C034792.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.2e-11 74.3 55 60.0
Aqoxy3G03529 Aquilegia oxysepala HOM05D007314 ORTHO05D003768 2.9e-11 73.9 86 40.7
Rhsim10G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.8e-11 73.6 198 29.8
Aqoxy5G02986 Aquilegia oxysepala HOM05D007314 ORTHO05D000285 4.9e-11 73.2 86 40.7
CSS0033678 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 6.5e-11 72.8 74 45.9
MELO3C035072.2 Cucumis melo HOM05D007314 ORTHO05D003768 6.5e-11 72.8 48 64.6
FvH4_5g18843 Fragaria vesca HOM05D008321 ORTHO05D003768 6.5e-11 72.8 73 46.6
CSS0045721 Camellia sinensis var. sinensis HOM05D007314 ORTHO05D003768 1.1e-10 72.0 91 40.7
MELO3C031375.2 Cucumis melo HOM05D008781 ORTHO05D003768 3.2e-10 70.5 101 38.6
RcHm_v2.0_Chr6g0269851 Rosa chinensis HOM05D008321 ORTHO05D003768 5.5e-10 69.7 166 30.1
MELO3C029576.2 Cucumis melo HOM05D007314 ORTHO05D003768 7.1e-10 69.3 48 64.6
PSO210G2358 Papaver somniferum HOM05D008526 ORTHO05D010380 7.1e-10 69.3 121 34.7
CSS0011924 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 9.3e-10 68.9 92 38.0
MELO3C028630.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.2e-09 68.6 55 54.5
FvH4_2g07142 Fragaria vesca HOM05D008321 ORTHO05D003768 1.2e-09 68.6 184 28.8
FvH4_4g06631 Fragaria vesca HOM05D008321 ORTHO05D003768 1.6e-09 68.2 172 27.9
PSO675G1909 Papaver somniferum HOM05D008526 ORTHO05D010380 1.6e-09 68.2 104 35.6
Atru.chr2.2530 Acer truncatum HOM05D001899 ORTHO05D001858 2.1e-09 67.8 91 38.5
Aqoxy3G00743 Aquilegia oxysepala HOM05D053128 ORTHO05D003768 2.1e-09 67.8 125 35.2
FvH4_6g20172 Fragaria vesca HOM05D008321 ORTHO05D003768 3.5e-09 67.0 83 38.6
FAN18G4094 Fragaria x ananassa HOM05D008321 ORTHO05D003768 4.6e-09 66.6 73 43.8
RcHm_v2.0_Chr0c28g0501051 Rosa chinensis HOM05D008321 ORTHO05D003768 4.6e-09 66.6 74 39.2
MELO3C029566.2 Cucumis melo HOM05D007314 ORTHO05D003768 6.0e-09 66.2 164 26.2
Rhsim01G0127800 Rhododendron simsii HOM05D000539 ORTHO05D000233 7.9e-09 65.9 216 29.2
Rhsim09G0096300 Rhododendron simsii HOM05D000539 ORTHO05D000233 7.9e-09 65.9 216 29.2
FvH4_4g16173 Fragaria vesca HOM05D008321 ORTHO05D003768 1.0e-08 65.5 157 29.3
FAN19G2766 Fragaria x ananassa HOM05D008321 ORTHO05D003768 1.3e-08 65.1 117 35.9
MELO3C032661.2 Cucumis melo HOM05D007314 ORTHO05D003768 2.3e-08 64.3 42 57.1
MELO3C032453.2 Cucumis melo HOM05D007314 ORTHO05D034924 8.7e-08 62.4 43 60.5
MELO3C033635.2 Cucumis melo HOM05D007314 ORTHO05D003768 1.5e-07 61.6 48 58.3
FvH4_1g29373 Fragaria vesca HOM05D008321 ORTHO05D003768 1.5e-07 61.6 83 34.9
FvH4_3g21852 Fragaria vesca HOM05D008321 ORTHO05D003768 1.5e-07 61.6 111 33.3
FAN07G1302 Fragaria x ananassa HOM05D008321 ORTHO05D003768 1.5e-07 61.6 87 39.1
Rhsim02G0154800 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.9e-07 61.2 219 26.5
FvH4_6g17382 Fragaria vesca HOM05D008321 ORTHO05D003768 2.5e-07 60.8 184 26.1
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 2.5e-07 60.8 79 40.5
FAN11G0529 Fragaria x ananassa HOM05D054682 ORTHO05D034924 2.5e-07 60.8 35 71.4
RcHm_v2.0_Chr2g0134701 Rosa chinensis HOM05D009091 ORTHO05D003768 2.5e-07 60.8 78 44.9
Aqoxy3G00744 Aquilegia oxysepala HOM05D053128 ORTHO05D003768 3.3e-07 60.5 101 36.6
MELO3C000505.2 Cucumis melo HOM05D007314 ORTHO05D003768 3.3e-07 60.5 48 50.0
FvH4_5g23172 Fragaria vesca HOM05D008321 ORTHO05D003768 3.3e-07 60.5 70 41.4
FvH4_6g35541 Fragaria vesca HOM05D009091 ORTHO05D003768 3.3e-07 60.5 78 38.5
FAN21G1044 Fragaria x ananassa HOM05D008321 ORTHO05D003768 3.3e-07 60.5 106 34.9
FvH4_2g08144 Fragaria vesca HOM05D008321 ORTHO05D003768 4.3e-07 60.1 72 38.9
FAN15G1405 Fragaria x ananassa HOM05D008321 ORTHO05D003768 4.3e-07 60.1 104 37.5
Atru.chr7.467 Acer truncatum HOM05D000107 ORTHO05D000062 5.7e-07 59.7 125 28.8
MELO3C033118.2 Cucumis melo HOM05D000539 ORTHO05D000592 7.4e-07 59.3 38 60.5
FvH4_3g29221 Fragaria vesca HOM05D054682 ORTHO05D034924 2.8e-06 57.4 35 68.6
FvH4_3g32731 Fragaria vesca HOM05D008321 ORTHO05D003768 3.7e-06 57.0 172 26.7
Atru.chr4.2623 Acer truncatum HOM05D008321 ORTHO05D003768 6.2e-06 56.2 87 46.0


User provided reference genes

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