Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 4.9e-51 204.1 100 100.0
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 1.2e-36 156.4 98 79.6
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.2e-36 156.4 98 79.6
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.5e-36 156.0 98 79.6
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 3.4e-36 154.8 98 78.6
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 9.9e-36 153.3 98 79.6
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 7.1e-34 147.1 98 76.5
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 1.6e-33 146.0 96 78.1
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 1.1e-31 139.8 93 73.1
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 4.3e-31 137.9 97 68.0
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 5.6e-31 137.5 93 73.1
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 1.3e-24 116.3 97 59.8
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 5.1e-24 114.4 90 62.2
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 8.7e-24 113.6 90 62.2
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 1.1e-23 113.2 89 64.0
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 1.3e-22 109.8 97 59.8
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 4.0e-21 104.8 90 56.7
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 9.9e-20 100.1 93 59.1
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 2.9e-19 98.6 88 54.5
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 8.4e-19 97.1 89 51.7
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.9e-18 95.9 90 51.1
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 1.9e-18 95.9 91 53.8
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 2.4e-18 95.5 89 49.4
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 4.2e-18 94.7 91 52.7
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 1.2e-17 93.2 88 51.1
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 6.0e-17 90.9 97 52.6
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 1.0e-16 90.1 90 53.3
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 2.3e-16 89.0 89 49.4
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 3.9e-16 88.2 93 46.2
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 5.1e-16 87.8 93 52.7
FAN25G2302 Fragaria x ananassa HOM05D000283 ORTHO05D000358 6.7e-16 87.4 59 78.0
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 1.1e-15 86.7 90 47.8
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 1.1e-15 86.7 93 49.5
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 2.5e-15 85.5 90 46.7
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 5.6e-15 84.3 89 49.4
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 7.4e-15 84.0 89 48.3
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 7.4e-15 84.0 92 45.7
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 7.4e-15 84.0 89 46.1
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 9.6e-15 83.6 91 49.5
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 1.3e-14 83.2 90 50.0
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 2.8e-14 82.0 95 49.5
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 2.8e-14 82.0 91 51.6
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 3.7e-14 81.6 91 48.4
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 3.7e-14 81.6 90 45.6
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 6.2e-14 80.9 95 47.4
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 1.4e-13 79.7 93 50.5
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 1.4e-13 79.7 89 49.4
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 1.8e-13 79.3 89 49.4
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 2.4e-13 79.0 91 49.5
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 2.4e-13 79.0 107 46.7
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 3.1e-13 78.6 98 43.9
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 4.0e-13 78.2 92 50.0
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 9.0e-13 77.0 92 51.1
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 1.2e-12 76.6 91 49.5
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 1.2e-12 76.6 91 49.5
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 1.5e-12 76.3 96 44.8
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 3.4e-12 75.1 91 46.2
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 3.4e-12 75.1 92 50.0
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 4.5e-12 74.7 92 48.9
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 1.0e-11 73.6 92 48.9
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 1.0e-11 73.6 92 48.9
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 1.0e-11 73.6 92 48.9
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 1.0e-11 73.6 92 48.9
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 1.3e-11 73.2 92 48.9
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 1.7e-11 72.8 93 48.4
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 2.9e-11 72.0 92 48.9
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 4.9e-11 71.2 93 45.2
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 8.4e-11 70.5 98 40.8
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 1.1e-10 70.1 100 46.0
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 1.9e-10 69.3 91 47.3
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 1.9e-10 69.3 93 47.3
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 4.2e-10 68.2 106 40.6
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 5.5e-10 67.8 91 44.0
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 7.1e-10 67.4 94 47.9
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 7.1e-10 67.4 93 46.2
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.2e-09 66.6 89 40.4
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 1.6e-09 66.2 91 41.8
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 2.7e-09 65.5 92 42.4
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 3.5e-09 65.1 93 44.1
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 3.5e-09 65.1 92 45.7
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 7.9e-09 63.9 100 42.0
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 7.9e-09 63.9 92 47.8
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 1.3e-08 63.2 94 43.6
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 1.3e-08 63.2 91 41.8
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 1.8e-08 62.8 91 41.8
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 2.3e-08 62.4 93 45.2
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 3.9e-08 61.6 93 44.1
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 5.1e-08 61.2 88 42.0
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 5.1e-08 61.2 96 40.6
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 8.7e-08 60.5 90 43.3
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 8.7e-08 60.5 113 38.1
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.1e-07 60.1 93 44.1
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 1.9e-07 59.3 92 37.0
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 1.9e-07 59.3 88 42.0
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 2.5e-07 58.9 98 39.8
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 2.5e-07 58.9 88 40.9
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 3.3e-07 58.5 90 42.2
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 1.3e-06 56.6 93 39.8
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 2.1e-06 55.8 89 44.9
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 2.1e-06 55.8 96 40.6
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 6.2e-06 54.3 89 43.8


User provided reference genes

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