Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0063691 Rosa chinensis HOM05D000832 ORTHO05D347317 4.6e-27 123.6 55 100.0
RcHm_v2.0_Chr4g0407141 Rosa chinensis HOM05D000832 ORTHO05D015138 9.3e-12 72.8 35 91.4
Atru.chr11.1403 Acer truncatum HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
Aqoxy3G00432 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
Aqoxy3G03861 Aquilegia oxysepala HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
BcaC05g26646 Brassica carinata HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
A07p31800 Brassica napus HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
A09p39680 Brassica napus HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
C05p24840 Brassica napus HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
C06p37340 Brassica napus HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
BolC5t31213H Brassica oleracea HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
BolC6t38836H Brassica oleracea HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
BraA07t30807Z Brassica rapa HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
BraA09t39467Z Brassica rapa HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
Carub.0002s1530 Capsella rubella HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
Cfa008782 Carpinus fangiana HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
CiPaw.05G116300 Carya illinoinensis HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
Ciclev10030580m.g Citrus clementina HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
Haze_11794 Corylus avellana HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
Glyma.02G130701 Glycine max HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
Manes.06G074600 Manihot esculenta HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
Manes.14G095900 Manihot esculenta HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
PSO478G2608 Papaver somniferum HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
Potri.008G114200 Populus trichocarpa HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
Potri.010G131800 Populus trichocarpa HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
PGR102G0673 Punica granatum HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
QL03p045000 Quercus lobata HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
RcHm_v2.0_Chr4g0436201 Rosa chinensis HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
Sabra08G0086500 Salix brachista HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
Sabra10G0100500 Salix brachista HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
Sp5g23860 Schrenkiella parvula HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
TWI31G0281 Tripterygium wilfordii HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
GSVIVG01011979001 Vitis vinifera HOM05D000832 ORTHO05D000982 9.7e-09 62.8 30 90.0
Ca_05096_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 1.3e-08 62.4 30 86.7
Eucgr.B03067 Eucalyptus grandis HOM05D000832 ORTHO05D000982 1.3e-08 62.4 30 86.7
Lalb_Chr02g0151871 Lupinus albus HOM05D000832 ORTHO05D000982 1.3e-08 62.4 30 86.7
TAR622G0475 Trochodendron aralioides HOM05D000832 ORTHO05D000982 1.3e-08 62.4 30 86.7
TAR702G0001 Trochodendron aralioides HOM05D000832 ORTHO05D000982 1.3e-08 62.4 30 86.7
arahy.Tifrunner.gnm1.ann1.WRC151 Arachis hypogaea HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
arahy.Tifrunner.gnm1.ann1.X6HICW Arachis hypogaea HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
CiPaw.06G099100 Carya illinoinensis HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
COL.COLO4_07850 Corchorus olitorius HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
Duzib248G1658 Durio zibethinus HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
FvH4_4g28350 Fragaria vesca HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
FAN07G1155 Fragaria x ananassa HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
FAN12G1340 Fragaria x ananassa HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
FAN17G1376 Fragaria x ananassa HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
MD13G1049200 Malus domestica HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
Nn3g17670 Nelumbo nucifera HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
Phvul.003G024800 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
Prupe.1G302700 Prunus persica HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
SHI24310 Sapria himalayana HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
SGA_v2.0_scaffold14G06799 Striga asiatica HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
Thecc.02G363600 Theobroma cacao HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
TAR371G0210 Trochodendron aralioides HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
VMungo1215G1721 Vigna mungo HOM05D000832 ORTHO05D000982 2.2e-08 61.6 30 86.7
AL1G39660 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 2.8e-08 61.2 30 86.7
AL2G27680 Arabidopsis lyrata HOM05D000832 ORTHO05D000982 2.8e-08 61.2 30 86.7
AT1G68750 Arabidopsis thaliana HOM05D000832 ORTHO05D000982 2.8e-08 61.2 30 86.7
Carub.0001s2485 Capsella rubella HOM05D000832 ORTHO05D000982 2.8e-08 61.2 30 86.7
CARHR025810 Cardamine hirsuta HOM05D000832 ORTHO05D000982 2.8e-08 61.2 30 86.7
CARHR061570 Cardamine hirsuta HOM05D000832 ORTHO05D000982 2.8e-08 61.2 30 86.7
CDE07G1750 Ceratophyllum demersum HOM05D000832 ORTHO05D000982 2.8e-08 61.2 30 86.7
Thhalv10006672m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 2.8e-08 61.2 30 86.7
Sp1g22570 Schrenkiella parvula HOM05D000832 ORTHO05D000982 2.8e-08 61.2 30 86.7
HPP92_011592 Vanilla planifolia HOM05D000832 ORTHO05D000982 2.8e-08 61.2 34 73.5
CSS0027131 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 3.7e-08 60.8 30 86.7
Dinv05809 Davidia involucrata HOM05D000832 ORTHO05D000982 3.7e-08 60.8 30 86.7
Thhalv10018058m.g Eutrema salsugineum HOM05D000832 ORTHO05D000982 3.7e-08 60.8 30 86.7
Hma1.2p1_0406F.1_g145940 Hydrangea macrophylla HOM05D000832 ORTHO05D000982 3.7e-08 60.8 30 86.7
EL10Ac6g14528 Beta vulgaris HOM05D000832 ORTHO05D000982 4.8e-08 60.5 30 86.7
Cpa.g.sc1.237 Carica papaya HOM05D000832 ORTHO05D000982 4.8e-08 60.5 30 86.7
AUR62002943 Chenopodium quinoa HOM05D000832 ORTHO05D000982 4.8e-08 60.5 30 86.7
AUR62007752 Chenopodium quinoa HOM05D000832 ORTHO05D000982 4.8e-08 60.5 30 86.7
Cc11_g10810 Coffea canephora HOM05D000832 ORTHO05D000982 4.8e-08 60.5 30 83.3
FAN22G0367 Fragaria x ananassa HOM05D000832 ORTHO05D000982 4.8e-08 60.5 30 86.7
MD16G1050300 Malus domestica HOM05D000832 ORTHO05D000982 4.8e-08 60.5 30 83.3
Nn4g23672 Nelumbo nucifera HOM05D000832 ORTHO05D000982 4.8e-08 60.5 30 86.7
Oeu024113.1 Olea europaea HOM05D000832 ORTHO05D000982 4.8e-08 60.5 30 83.3
Actinidia14835 Actinidia chinensis HOM05D000832 ORTHO05D000982 6.3e-08 60.1 30 86.7
Migut.E00286 Erythranthe guttata HOM05D000832 ORTHO05D000982 6.3e-08 60.1 30 83.3
Gohir.D12G175500 Gossypium hirsutum HOM05D000832 ORTHO05D000982 6.3e-08 60.1 30 80.0
Gorai.008G187900 Gossypium raimondii HOM05D000832 ORTHO05D000982 6.3e-08 60.1 30 80.0
Lj3A1022G56 Lonicera japonica HOM05D000832 ORTHO05D000982 6.3e-08 60.1 30 83.3
Medtr0002s0890 Medicago truncatula HOM05D000832 ORTHO05D000982 6.3e-08 60.1 30 80.0
Psat2g088840 Pisum sativum HOM05D000832 ORTHO05D000982 6.3e-08 60.1 30 80.0
THA.LOC104808410 Tarenaya hassleriana HOM05D000832 ORTHO05D000982 6.3e-08 60.1 30 83.3
TPR.G2687 Trifolium pratense HOM05D000832 ORTHO05D000982 6.3e-08 60.1 30 80.0
Dinv16529 Davidia involucrata HOM05D000832 ORTHO05D000982 8.2e-08 59.7 30 83.3
Glyma.10G205500 Glycine max HOM05D000832 ORTHO05D000982 8.2e-08 59.7 30 83.3
Lj2g0012347 Lotus japonicus HOM05D000832 ORTHO05D000982 8.2e-08 59.7 30 80.0
MBI10_g18304_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 8.2e-08 59.7 30 83.3
Rhsim09G0114100 Rhododendron simsii HOM05D000832 ORTHO05D000982 8.2e-08 59.7 29 89.7
arahy.Tifrunner.gnm1.ann1.3YC2HT Arachis hypogaea HOM05D000832 ORTHO05D000982 1.1e-07 59.3 30 83.3
ECA234G2274 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.1e-07 59.3 30 80.0
Glyma.01G091000 Glycine max HOM05D000832 ORTHO05D000982 1.1e-07 59.3 30 86.7
HanXRQChr17g0568111 Helianthus annuus HOM05D000832 ORTHO05D000982 1.1e-07 59.3 30 80.0
Phvul.007G101300 Phaseolus vulgaris HOM05D000832 ORTHO05D000982 1.1e-07 59.3 30 83.3
VMungo0720G2531 Vigna mungo HOM05D000832 ORTHO05D000982 1.1e-07 59.3 30 83.3
Lj5g0020451 Lotus japonicus HOM05D000832 ORTHO05D000982 1.4e-07 58.9 30 83.3
RcHm_v2.0_Chr5g0035861 Rosa chinensis HOM05D000832 ORTHO05D000982 1.4e-07 58.9 29 86.2
Ah.02g127340 Amaranthus hybridus HOM05D000832 ORTHO05D000982 1.8e-07 58.5 30 83.3
DCAR_030097 Daucus carota HOM05D000832 ORTHO05D000982 1.8e-07 58.5 30 80.0
Lj6A768T59 Lonicera japonica HOM05D000832 ORTHO05D000982 1.8e-07 58.5 30 80.0
Ca_10524_v3 Cicer arietinum L. HOM05D000832 ORTHO05D000982 2.4e-07 58.2 30 80.0
Gohir.A12G172900 Gossypium hirsutum HOM05D000832 ORTHO05D000982 3.1e-07 57.8 30 76.7
Hund05778 Selenicereus undatus HOM05D000832 ORTHO05D000982 3.1e-07 57.8 30 80.0
CSS0044860 Camellia sinensis var. sinensis HOM05D000832 ORTHO05D000982 5.3e-07 57.0 30 83.3
ECA233G3801 Erigeron canadensis HOM05D000832 ORTHO05D000982 5.3e-07 57.0 30 80.0
HanXRQChr08g0214471 Helianthus annuus HOM05D000832 ORTHO05D000982 5.3e-07 57.0 30 80.0
Lsat_1_v5_gn_8_38141 Lactuca sativa HOM05D000832 ORTHO05D000982 5.3e-07 57.0 30 80.0
Peaxi162Scf00369g00124 Petunia axillaris HOM05D000832 ORTHO05D000982 5.3e-07 57.0 30 83.3
CAN.G44.11 Capsicum annuum HOM05D000832 ORTHO05D000982 6.9e-07 56.6 30 80.0
ClCG01G005810 Citrullus lanatus HOM05D000832 ORTHO05D000982 6.9e-07 56.6 30 80.0
MELO3C005348.2 Cucumis melo HOM05D000832 ORTHO05D000982 6.9e-07 56.6 30 80.0
CsaV3_5G028880 Cucumis sativus L. HOM05D000832 ORTHO05D000982 6.9e-07 56.6 30 80.0
MBI16_g06572_MAGBIO Magnolia biondii HOM05D000832 ORTHO05D000982 6.9e-07 56.6 30 80.0
Sed0007358 Sechium edule HOM05D000832 ORTHO05D000982 6.9e-07 56.6 30 80.0
Solyc04g006970.4 Solanum lycopersicum HOM05D000832 ORTHO05D000982 6.9e-07 56.6 30 80.0
Sopen04g002020 Solanum pennellii HOM05D000832 ORTHO05D000982 6.9e-07 56.6 30 80.0
PGSC0003DMG400007466 Solanum tuberosum HOM05D000832 ORTHO05D000982 6.9e-07 56.6 30 80.0
vmacro10512 Vaccinium macrocarpon HOM05D000832 ORTHO05D000982 6.9e-07 56.6 29 82.8
SEGI_10409 Sequoiadendron giganteum HOM05D000832 ORTHO05D000982 9.0e-07 56.2 30 76.7
Nitab4.5_0000221g0050 Nicotiana tabacum HOM05D000832 ORTHO05D000982 1.2e-06 55.8 30 80.0
Nitab4.5_0003669g0010 Nicotiana tabacum HOM05D000832 ORTHO05D000982 1.2e-06 55.8 30 80.0
Peaxi162Scf00614g00038 Petunia axillaris HOM05D000832 ORTHO05D000982 1.2e-06 55.8 30 80.0
MSTRG.2271 Avicennia marina HOM05D000832 ORTHO05D000982 1.5e-06 55.5 30 76.7
Medtr1g094000 Medicago truncatula HOM05D000832 ORTHO05D000982 1.5e-06 55.5 30 76.7
Psat6g181480 Pisum sativum HOM05D000832 ORTHO05D000982 1.5e-06 55.5 30 76.7
Sc04g0006860 Simmondsia chinensis HOM05D000832 ORTHO05D000982 2.6e-06 54.7 30 76.7
SMO239G0149 Selaginella moellendorffii HOM05D000832 ORTHO05D000982 5.9e-06 53.5 30 73.3


User provided reference genes

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