Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0063471 Rosa chinensis HOM05D007212 ORTHO05D009094 1.8e-66 257.7 125 100.0
FAN21G3687 Fragaria x ananassa HOM05D007212 ORTHO05D009094 2.8e-35 154.1 85 88.2
FvH4_3g35360 Fragaria vesca HOM05D007212 ORTHO05D009094 1.1e-34 152.1 85 88.2
FAN16G0386 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.8e-34 151.4 145 59.3
FAN11G2747 Fragaria x ananassa HOM05D007212 ORTHO05D009094 8.9e-34 149.1 85 87.1
Prupe.6G082100 Prunus persica HOM05D007212 ORTHO05D009094 2.2e-32 144.4 145 53.1
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 7.8e-30 136.0 149 51.7
Haze_24045 Corylus avellana HOM05D007212 ORTHO05D009094 2.1e-19 101.3 139 43.9
Cfa011459 Carpinus fangiana HOM05D007212 ORTHO05D009094 4.0e-18 97.1 146 41.1
CiPaw.14G071200 Carya illinoinensis HOM05D007212 ORTHO05D009094 5.2e-18 96.7 85 58.8
QL01p032998 Quercus lobata HOM05D007212 ORTHO05D009094 6.9e-18 96.3 86 62.8
Cpa.g.sc190.19 Carica papaya HOM05D007212 ORTHO05D009094 2.4e-15 87.8 85 49.4
Rhsim13G0085700 Rhododendron simsii HOM05D007212 ORTHO05D009094 3.5e-14 84.0 85 49.4
CSS0026864 Camellia sinensis var. sinensis HOM05D007212 ORTHO05D009094 4.6e-14 83.6 89 47.2
Atru.chr3.3834 Acer truncatum HOM05D007212 ORTHO05D009094 2.3e-13 81.3 149 36.2
Psat7g177640 Pisum sativum HOM05D007212 ORTHO05D009094 1.5e-12 78.6 76 56.6
Hma1.2p1_0094F.1_g047150 Hydrangea macrophylla HOM05D007212 ORTHO05D009094 4.3e-12 77.0 87 52.9
TPR.G17150 Trifolium pratense HOM05D007212 ORTHO05D009094 1.6e-11 75.1 89 53.9
Medtr4g075270 Medicago truncatula HOM05D007212 ORTHO05D009094 2.1e-11 74.7 58 60.3
vmacro03100 Vaccinium macrocarpon HOM05D007212 ORTHO05D009094 2.8e-11 74.3 85 47.1
Sabra16G0142600 Salix brachista HOM05D007212 ORTHO05D009094 3.6e-11 73.9 89 49.4
COL.COLO4_18464 Corchorus olitorius HOM05D007212 ORTHO05D009094 6.2e-11 73.2 141 39.0
Potri.001G236800 Populus trichocarpa HOM05D007212 ORTHO05D009094 6.2e-11 73.2 82 48.8
TAR633G0773 Trochodendron aralioides HOM05D007212 ORTHO05D009094 1.4e-10 72.0 145 33.8
arahy.Tifrunner.gnm1.ann1.0V2A2H Arachis hypogaea HOM05D007212 ORTHO05D009094 3.1e-10 70.9 81 50.6
arahy.Tifrunner.gnm1.ann1.C93D89 Arachis hypogaea HOM05D007212 ORTHO05D009094 3.1e-10 70.9 81 50.6
Cc01_g12460 Coffea canephora HOM05D007212 ORTHO05D009094 4.0e-10 70.5 84 46.4
TWI79G1118 Tripterygium wilfordii HOM05D007212 ORTHO05D009094 5.3e-10 70.1 87 47.1
Lalb_Chr01g0001381 Lupinus albus HOM05D007212 ORTHO05D009094 9.0e-10 69.3 86 47.7
Dinv32867 Davidia involucrata HOM05D007212 ORTHO05D009094 1.2e-09 68.9 41 68.3
Glyma.11G098900 Glycine max HOM05D007212 ORTHO05D009094 1.2e-09 68.9 39 69.2
Lj3g0025740 Lotus japonicus HOM05D007212 ORTHO05D009094 1.2e-09 68.9 49 59.2
GSVIVG01025017001 Vitis vinifera HOM05D007212 ORTHO05D009094 1.2e-09 68.9 86 47.7
VMungo1127G0797 Vigna mungo HOM05D007212 ORTHO05D009094 1.5e-09 68.6 39 69.2
Thecc.09G326300 Theobroma cacao HOM05D007212 ORTHO05D009094 2.0e-09 68.2 85 48.2
CDE09G0292 Ceratophyllum demersum HOM05D007212 ORTHO05D009094 3.4e-09 67.4 41 68.3
THA.LOC104814860 Tarenaya hassleriana HOM05D007212 ORTHO05D009094 4.5e-09 67.0 85 41.2
Sed0018920 Sechium edule HOM05D007212 ORTHO05D009094 5.8e-09 66.6 146 33.6
Ciclev10027786m.g Citrus clementina HOM05D007212 ORTHO05D009094 9.9e-09 65.9 85 44.7
Gorai.003G135500 Gossypium raimondii HOM05D007212 ORTHO05D009094 1.3e-08 65.5 86 48.8
Phvul.011G027200 Phaseolus vulgaris HOM05D007212 ORTHO05D009094 1.3e-08 65.5 38 68.4
Cpa.g.sc190.20 Carica papaya HOM05D007212 ORTHO05D009094 1.7e-08 65.1 39 69.2
PGR119G1050 Punica granatum HOM05D007212 ORTHO05D009094 2.2e-08 64.7 40 67.5
PGR142G1175 Punica granatum HOM05D007212 ORTHO05D009094 2.2e-08 64.7 40 67.5
SalBow3G0436 Salvia bowleyana HOM05D007212 ORTHO05D009094 2.9e-08 64.3 41 65.9
DCAR_015608 Daucus carota HOM05D007212 ORTHO05D009094 3.8e-08 63.9 69 49.3
Lj1P206T25 Lonicera japonica HOM05D007212 ORTHO05D009094 3.8e-08 63.9 87 43.7
SGA_v2.0_scaffold134G34680 Striga asiatica HOM05D007212 ORTHO05D009094 3.8e-08 63.9 42 59.5
Aqoxy4G02992 Aquilegia oxysepala HOM05D007212 ORTHO05D009094 4.9e-08 63.5 85 45.9
EL10Ac6g14029 Beta vulgaris HOM05D007212 ORTHO05D009094 4.9e-08 63.5 41 65.9
BcaC04g19649 Brassica carinata HOM05D007212 ORTHO05D009094 6.4e-08 63.2 41 65.9
C09p52430 Brassica napus HOM05D007212 ORTHO05D009094 6.4e-08 63.2 41 65.9
BolC9t58111H Brassica oleracea HOM05D007212 ORTHO05D009094 6.4e-08 63.2 41 65.9
Glyma.12G024900 Glycine max HOM05D007212 ORTHO05D009094 6.4e-08 63.2 48 56.2
Solyc11g073270.1 Solanum lycopersicum HOM05D007212 ORTHO05D009094 6.4e-08 63.2 41 58.5
Sopen11g030900 Solanum pennellii HOM05D007212 ORTHO05D009094 6.4e-08 63.2 41 58.5
Ca_19008_v3 Cicer arietinum L. HOM05D007212 ORTHO05D009094 8.4e-08 62.8 40 67.5
Eucgr.J02064 Eucalyptus grandis HOM05D007212 ORTHO05D009094 1.1e-07 62.4 89 38.2
Thhalv10016210m.g Eutrema salsugineum HOM05D007212 ORTHO05D009094 1.4e-07 62.0 85 40.0
Manes.01G128700 Manihot esculenta HOM05D007212 ORTHO05D009094 1.4e-07 62.0 40 62.5
Sp6g21610 Schrenkiella parvula HOM05D007212 ORTHO05D009094 1.4e-07 62.0 41 63.4
MSTRG.21188 Avicennia marina HOM05D007212 ORTHO05D009094 1.9e-07 61.6 35 77.1
AUR62040786 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.9e-07 61.6 41 63.4
Nitab4.5_0000610g0130 Nicotiana tabacum HOM05D007212 ORTHO05D009094 1.9e-07 61.6 40 62.5
Nitab4.5_0003782g0040 Nicotiana tabacum HOM05D007212 ORTHO05D009094 1.9e-07 61.6 41 61.0
MELO3C035453.2 Cucumis melo HOM05D007212 ORTHO05D009094 2.4e-07 61.2 86 40.7
HanXRQChr08g0227881 Helianthus annuus HOM05D007212 ORTHO05D009094 2.4e-07 61.2 50 48.0
Actinidia07048 Actinidia chinensis HOM05D007212 ORTHO05D009094 4.2e-07 60.5 38 63.2
CARHR273510 Cardamine hirsuta HOM05D007212 ORTHO05D009094 4.2e-07 60.5 85 37.6
Migut.D02115 Erythranthe guttata HOM05D007212 ORTHO05D009094 4.2e-07 60.5 40 60.0
Sc09g0001880 Simmondsia chinensis HOM05D007212 ORTHO05D009094 4.2e-07 60.5 37 70.3
AL8G36470 Arabidopsis lyrata HOM05D007212 ORTHO05D009094 5.4e-07 60.1 41 61.0
BcaB08g36211 Brassica carinata HOM05D007212 ORTHO05D009094 5.4e-07 60.1 39 66.7
A10p17130 Brassica napus HOM05D007212 ORTHO05D009094 5.4e-07 60.1 41 61.0
BraA10t43795Z Brassica rapa HOM05D007212 ORTHO05D009094 5.4e-07 60.1 41 61.0
Nn2g10429 Nelumbo nucifera HOM05D007212 ORTHO05D009094 1.2e-06 58.9 86 38.4
CsaV3_1G013200 Cucumis sativus L. HOM05D007212 ORTHO05D009094 2.1e-06 58.2 41 63.4
Lj1A206G45 Lonicera japonica HOM05D007212 ORTHO05D009094 2.1e-06 58.2 34 70.6
ECA247G1906 Erigeron canadensis HOM05D007212 ORTHO05D009094 2.7e-06 57.8 37 67.6
SHI05964 Sapria himalayana HOM05D007212 ORTHO05D009094 4.6e-06 57.0 82 41.5
Aa31sc23G60 Aethionema arabicum HOM05D007212 ORTHO05D009094 7.9e-06 56.2 85 36.5


User provided reference genes

Program Settings