Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0062961 Rosa chinensis HOM05D002878 ORTHO05D003649 2.3e-22 107.8 49 100.0
RcHm_v2.0_Chr2g0105701 Rosa chinensis HOM05D002878 ORTHO05D003649 7.8e-18 92.8 44 93.2
FvH4_1g16080 Fragaria vesca HOM05D002878 ORTHO05D003649 1.0e-17 92.4 44 90.9
FAN19G0778 Fragaria x ananassa HOM05D002878 ORTHO05D003649 1.0e-17 92.4 44 90.9
FAN23G1030 Fragaria x ananassa HOM05D002878 ORTHO05D003649 1.0e-17 92.4 44 90.9
FAN28G1157 Fragaria x ananassa HOM05D002878 ORTHO05D003649 1.0e-17 92.4 44 90.9
MD15G1284500 Malus domestica HOM05D002878 ORTHO05D003649 6.6e-17 89.7 44 90.9
Prupe.7G133100 Prunus persica HOM05D002878 ORTHO05D003649 6.6e-17 89.7 44 90.9
MD02G1172400 Malus domestica HOM05D002878 ORTHO05D003649 2.5e-16 87.8 44 88.6
Eucgr.I00922 Eucalyptus grandis HOM05D002878 ORTHO05D003649 5.6e-16 86.7 44 86.4
Sed0023782 Sechium edule HOM05D002878 ORTHO05D003649 1.2e-15 85.5 44 84.1
GSVIVG01022128001 Vitis vinifera HOM05D002878 ORTHO05D003649 1.2e-15 85.5 44 86.4
BcaB02g09963 Brassica carinata HOM05D002878 ORTHO05D003649 2.1e-15 84.7 44 81.8
BcaC06g34781 Brassica carinata HOM05D002878 ORTHO05D003649 2.1e-15 84.7 44 81.8
A07p16900 Brassica napus HOM05D002878 ORTHO05D003649 2.1e-15 84.7 44 81.8
C07p24710 Brassica napus HOM05D002878 ORTHO05D003649 2.1e-15 84.7 44 81.8
BolC7t42992H Brassica oleracea HOM05D002878 ORTHO05D003649 2.1e-15 84.7 44 81.8
BraA07t29416Z Brassica rapa HOM05D002878 ORTHO05D003649 2.1e-15 84.7 44 81.8
Carub.0008s2747 Capsella rubella HOM05D002878 ORTHO05D003649 2.1e-15 84.7 44 81.8
CARHR280630 Cardamine hirsuta HOM05D002878 ORTHO05D003649 2.1e-15 84.7 44 81.8
Thhalv10003769m.g Eutrema salsugineum HOM05D002878 ORTHO05D003649 2.1e-15 84.7 44 81.8
AL8G44330 Arabidopsis lyrata HOM05D002878 ORTHO05D003649 3.6e-15 84.0 44 79.5
Sed0027368 Sechium edule HOM05D002878 ORTHO05D003649 3.6e-15 84.0 44 79.5
Sp2g29640 Schrenkiella parvula HOM05D002878 ORTHO05D003649 4.7e-15 83.6 44 79.5
TAR628G1519 Trochodendron aralioides HOM05D002878 ORTHO05D003649 4.7e-15 83.6 44 88.6
Aa31LG1G15560 Aethionema arabicum HOM05D002878 ORTHO05D003649 6.2e-15 83.2 44 81.8
Aqoxy5G01226 Aquilegia oxysepala HOM05D002878 ORTHO05D003649 6.2e-15 83.2 44 79.5
CANSAT01G1312 Cannabis sativa HOM05D002878 ORTHO05D003649 6.2e-15 83.2 44 84.1
CiPaw.01G017900 Carya illinoinensis HOM05D002878 ORTHO05D003649 6.2e-15 83.2 44 84.1
Duzib187G0827 Durio zibethinus HOM05D002878 ORTHO05D003649 6.2e-15 83.2 44 84.1
QL06p041333 Quercus lobata HOM05D002878 ORTHO05D003649 6.2e-15 83.2 44 86.4
Cfa004025 Carpinus fangiana HOM05D002878 ORTHO05D003649 8.0e-15 82.8 44 84.1
Glyma.11G055700 Glycine max HOM05D002878 ORTHO05D003649 1.0e-14 82.4 44 81.8
Ciclev10025089m.g Citrus clementina HOM05D002878 ORTHO05D003649 1.4e-14 82.0 44 81.8
Phvul.002G018700 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 1.4e-14 82.0 44 81.8
Lj2g0007356 Lotus japonicus HOM05D002878 ORTHO05D003649 1.8e-14 81.6 44 79.5
Thecc.01G056500 Theobroma cacao HOM05D002878 ORTHO05D003649 2.3e-14 81.3 44 84.1
Hund16322 Selenicereus undatus HOM05D002878 ORTHO05D003649 3.1e-14 80.9 44 79.5
AT5G67030 Arabidopsis thaliana HOM05D002878 ORTHO05D003649 4.0e-14 80.5 44 75.0
Cc07_g06010 Coffea canephora HOM05D002878 ORTHO05D003649 4.0e-14 80.5 44 79.5
MBI03_g13473_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 4.0e-14 80.5 44 81.8
Medtr5g017350 Medicago truncatula HOM05D002878 ORTHO05D003649 4.0e-14 80.5 44 79.5
EL10Ac6g15742 Beta vulgaris HOM05D002878 ORTHO05D003649 5.2e-14 80.1 44 79.5
ClCG02G012500 Citrullus lanatus HOM05D002878 ORTHO05D003649 5.2e-14 80.1 44 77.3
MELO3C020872.2 Cucumis melo HOM05D002878 ORTHO05D003649 5.2e-14 80.1 44 77.3
CsaV3_2G016630 Cucumis sativus L. HOM05D002878 ORTHO05D003649 5.2e-14 80.1 44 77.3
arahy.Tifrunner.gnm1.ann1.5ITW1B Arachis hypogaea HOM05D002878 ORTHO05D003649 6.8e-14 79.7 44 79.5
arahy.Tifrunner.gnm1.ann1.H1IQ00 Arachis hypogaea HOM05D002878 ORTHO05D003649 6.8e-14 79.7 44 79.5
HanXRQChr12g0378831 Helianthus annuus HOM05D002878 ORTHO05D003649 6.8e-14 79.7 43 81.4
VMungo1215G2613 Vigna mungo HOM05D002878 ORTHO05D003649 6.8e-14 79.7 44 79.5
arahy.Tifrunner.gnm1.ann1.MHSG3V Arachis hypogaea HOM05D002878 ORTHO05D003649 8.9e-14 79.3 44 77.3
Phvul.003G243800 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 8.9e-14 79.3 44 79.5
TAR376G0016 Trochodendron aralioides HOM05D002878 ORTHO05D003649 8.9e-14 79.3 44 81.8
VMungo0251G0371 Vigna mungo HOM05D002878 ORTHO05D003649 8.9e-14 79.3 44 79.5
PGR004G0880 Punica granatum HOM05D002878 ORTHO05D003649 1.2e-13 79.0 44 79.5
MSTRG.23744 Avicennia marina HOM05D002878 ORTHO05D003649 1.5e-13 78.6 44 79.5
AUR62001926 Chenopodium quinoa HOM05D002878 ORTHO05D003649 1.5e-13 78.6 44 77.3
AUR62003884 Chenopodium quinoa HOM05D002878 ORTHO05D003649 1.5e-13 78.6 44 77.3
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 1.5e-13 78.6 44 79.5
TWI09G0920 Tripterygium wilfordii HOM05D002878 ORTHO05D003649 1.5e-13 78.6 44 75.0
Actinidia16481 Actinidia chinensis HOM05D002878 ORTHO05D003649 2.0e-13 78.2 44 79.5
arahy.Tifrunner.gnm1.ann1.A5JFP2 Arachis hypogaea HOM05D002878 ORTHO05D003649 2.0e-13 78.2 44 75.0
Migut.H00431 Erythranthe guttata HOM05D002878 ORTHO05D003649 2.0e-13 78.2 44 79.5
Lj4g0006017 Lotus japonicus HOM05D002878 ORTHO05D003649 2.0e-13 78.2 44 79.5
Potri.005G138400 Populus trichocarpa HOM05D002878 ORTHO05D003649 2.0e-13 78.2 44 77.3
Rhsim10G0117200 Rhododendron simsii HOM05D002878 ORTHO05D003649 2.0e-13 78.2 43 79.1
Sabra05G0112100 Salix brachista HOM05D002878 ORTHO05D003649 2.0e-13 78.2 44 77.3
Sc07g0000780 Simmondsia chinensis HOM05D002878 ORTHO05D003649 2.0e-13 78.2 44 79.5
Atru.chr3.325 Acer truncatum HOM05D002878 ORTHO05D003649 2.6e-13 77.8 44 79.5
Ca_24768_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 2.6e-13 77.8 44 77.3
Duzib147G1525 Durio zibethinus HOM05D002878 ORTHO05D003649 2.6e-13 77.8 44 77.3
Glyma.17G174500 Glycine max HOM05D002878 ORTHO05D003649 2.6e-13 77.8 44 77.3
Manes.13G124100 Manihot esculenta HOM05D002878 ORTHO05D003649 2.6e-13 77.8 44 79.5
Cpa.g.sc55.146 Carica papaya HOM05D002878 ORTHO05D003649 3.4e-13 77.4 44 79.5
Hma1.2p1_0017F.1_g011360 Hydrangea macrophylla HOM05D002878 ORTHO05D003649 3.4e-13 77.4 43 81.4
Lalb_Chr00c02g0404101 Lupinus albus HOM05D002878 ORTHO05D003649 3.4e-13 77.4 44 75.0
Sabra07G0039100 Salix brachista HOM05D002878 ORTHO05D003649 3.4e-13 77.4 44 79.5
SGA_v2.0_scaffold15G07306 Striga asiatica HOM05D002878 ORTHO05D003649 3.4e-13 77.4 44 77.3
MSTRG.2882 Avicennia marina HOM05D002878 ORTHO05D003649 4.4e-13 77.0 43 79.1
DCAR_025735 Daucus carota HOM05D002878 ORTHO05D003649 4.4e-13 77.0 44 77.3
Lj4C149T12 Lonicera japonica HOM05D002878 ORTHO05D003649 4.4e-13 77.0 44 79.5
CSS0031288 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 5.8e-13 76.6 44 77.3
ECA246G0578 Erigeron canadensis HOM05D002878 ORTHO05D003649 5.8e-13 76.6 43 79.1
Os04g0448900 Oryza sativa ssp. japonica HOM05D002878 ORTHO05D003649 5.8e-13 76.6 44 77.3
Psat0s1281g0080 Pisum sativum HOM05D002878 ORTHO05D003649 5.8e-13 76.6 43 79.1
SalBow1G5413 Salvia bowleyana HOM05D002878 ORTHO05D003649 5.8e-13 76.6 44 77.3
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 7.5e-13 76.3 44 77.3
Potri.007G044300 Populus trichocarpa HOM05D002878 ORTHO05D003649 7.5e-13 76.3 43 79.1
HPP92_010971 Vanilla planifolia HOM05D002878 ORTHO05D003649 7.5e-13 76.3 44 75.0
BcaC04g23187 Brassica carinata HOM05D002878 ORTHO05D003649 9.8e-13 75.9 44 70.5
BcaC04g23188 Brassica carinata HOM05D002878 ORTHO05D003649 9.8e-13 75.9 44 70.5
Dinv39846 Davidia involucrata HOM05D002878 ORTHO05D003649 9.8e-13 75.9 44 77.3
vmacro05340 Vaccinium macrocarpon HOM05D002878 ORTHO05D003649 9.8e-13 75.9 43 76.7
Zm00001eb423570 Zea mays HOM05D002878 ORTHO05D003649 9.8e-13 75.9 44 77.3
Gohir.A11G192600 Gossypium hirsutum HOM05D002878 ORTHO05D003649 1.3e-12 75.5 44 75.0
Gohir.D11G199300 Gossypium hirsutum HOM05D002878 ORTHO05D003649 1.3e-12 75.5 44 75.0
Gorai.007G213500 Gossypium raimondii HOM05D002878 ORTHO05D003649 1.3e-12 75.5 44 75.0
Lalb_Chr16g0378561 Lupinus albus HOM05D002878 ORTHO05D003649 1.3e-12 75.5 44 70.5
CAN.G660.9 Capsicum annuum HOM05D002878 ORTHO05D003649 1.7e-12 75.1 44 72.7
Ca_22162_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 1.7e-12 75.1 43 76.7
PSO170G1040 Papaver somniferum HOM05D002878 ORTHO05D003649 1.7e-12 75.1 44 75.0
PSO210G3686 Papaver somniferum HOM05D002878 ORTHO05D003649 1.7e-12 75.1 44 75.0
Psat2g167360 Pisum sativum HOM05D002878 ORTHO05D003649 1.7e-12 75.1 44 75.0
Sed0019988 Sechium edule HOM05D002878 ORTHO05D003649 1.7e-12 75.1 44 77.3
unitig_27.g25327 Utricularia gibba HOM05D002878 ORTHO05D003649 1.7e-12 75.1 44 75.0
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 2.2e-12 74.7 44 75.0
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 2.2e-12 74.7 44 75.0
THA.LOC104819235 Tarenaya hassleriana HOM05D002878 ORTHO05D003649 2.2e-12 74.7 42 78.6
Nn5g30293 Nelumbo nucifera HOM05D002878 ORTHO05D003649 2.9e-12 74.3 44 75.0
TPR.G19064 Trifolium pratense HOM05D002878 ORTHO05D003649 2.9e-12 74.3 43 74.4
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 3.7e-12 73.9 44 72.7
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 3.7e-12 73.9 44 72.7
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 3.7e-12 73.9 44 72.7
Ciclev10027323m.g Citrus clementina HOM05D002878 ORTHO05D003649 1.1e-11 72.4 44 75.0
Lsat_1_v5_gn_3_90761 Lactuca sativa HOM05D002878 ORTHO05D003649 1.1e-11 72.4 43 72.1
SMO134G0128 Selaginella moellendorffii HOM05D002878 ORTHO05D003649 1.1e-11 72.4 44 70.5
Zm00001eb081460 Zea mays HOM05D002878 ORTHO05D003649 1.4e-11 72.0 44 75.0
SEGI_14380 Sequoiadendron giganteum HOM05D002878 ORTHO05D003649 1.9e-11 71.6 44 70.5
ATR1126G066 Amborella trichopoda HOM05D002878 ORTHO05D003649 3.2e-11 70.9 44 70.5
BcaC04g23185 Brassica carinata HOM05D002878 ORTHO05D003649 3.2e-11 70.9 44 68.2
C09p11330 Brassica napus HOM05D002878 ORTHO05D003649 3.2e-11 70.9 44 68.2
BolC9t54020H Brassica oleracea HOM05D002878 ORTHO05D003649 3.2e-11 70.9 44 68.2
SalBow5G1901 Salvia bowleyana HOM05D002878 ORTHO05D003649 3.2e-11 70.9 44 68.2
BcaB04g20078 Brassica carinata HOM05D002878 ORTHO05D003649 7.0e-11 69.7 41 68.3
CDE10G0029 Ceratophyllum demersum HOM05D002878 ORTHO05D003649 2.0e-10 68.2 44 68.2
Migut.K00767 Erythranthe guttata HOM05D002878 ORTHO05D003649 2.0e-10 68.2 44 61.4
A09p09580 Brassica napus HOM05D002878 ORTHO05D003649 3.5e-10 67.4 44 63.6
BraA09t36606Z Brassica rapa HOM05D002878 ORTHO05D003649 3.5e-10 67.4 44 63.6
Mapoly0028s0084 Marchantia polymorpha HOM05D002878 ORTHO05D003649 1.3e-09 65.5 44 63.6
Pp3c12_10330 Physcomitrium patens HOM05D002878 ORTHO05D003649 2.3e-09 64.7 44 65.9
Haze_15395 Corylus avellana HOM05D002878 ORTHO05D003649 3.3e-08 60.8 31 83.9
Pp3c4_13840 Physcomitrium patens HOM05D002878 ORTHO05D003649 7.3e-08 59.7 44 61.4
arahy.Tifrunner.gnm1.ann1.43A3FA Arachis hypogaea HOM05D002878 ORTHO05D003649 1.6e-07 58.5 32 75.0
arahy.Tifrunner.gnm1.ann1.7TC4IV Arachis hypogaea HOM05D002878 ORTHO05D003649 1.6e-07 58.5 32 75.0
Oeu031955.2 Olea europaea HOM05D002878 ORTHO05D003649 4.7e-07 57.0 34 70.6


User provided reference genes

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