Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0060991 Rosa chinensis HOM05D007819 ORTHO05D009848 1.9e-167 592.4 293 100.0
FAN21G3467 Fragaria x ananassa HOM05D007819 ORTHO05D009848 1.1e-156 556.6 295 94.2
FAN25G2530 Fragaria x ananassa HOM05D007819 ORTHO05D009848 4.0e-154 548.1 295 92.9
FAN16G1444 Fragaria x ananassa HOM05D007819 ORTHO05D009848 7.6e-145 517.3 369 74.8
MD11G1124900 Malus domestica HOM05D007819 ORTHO05D009848 1.0e-133 480.3 287 80.8
MD03G1111000 Malus domestica HOM05D007819 ORTHO05D009848 1.4e-133 479.9 288 80.9
Manes.04G025500 Manihot esculenta HOM05D007819 ORTHO05D009848 3.2e-127 458.8 286 76.9
Nn2g10668 Nelumbo nucifera HOM05D007819 ORTHO05D009848 1.8e-122 443.0 277 77.6
PGR102G1079 Punica granatum HOM05D007819 ORTHO05D009848 2.4e-122 442.6 289 72.3
Gohir.A09G105900 Gossypium hirsutum HOM05D007819 ORTHO05D009848 9.1e-122 440.7 276 76.4
Gorai.006G121000 Gossypium raimondii HOM05D007819 ORTHO05D009848 9.1e-122 440.7 277 77.3
Thecc.09G261200 Theobroma cacao HOM05D007819 ORTHO05D009848 5.9e-121 438.0 276 75.7
TWI75G0698 Tripterygium wilfordii HOM05D007819 ORTHO05D009848 2.2e-120 436.0 277 75.8
Duzib168G1088 Durio zibethinus HOM05D007819 ORTHO05D009848 5.0e-120 434.9 281 74.7
Cpa.g.sc318.6 Carica papaya HOM05D007819 ORTHO05D009848 1.4e-119 433.3 279 72.8
Gohir.D09G102600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.6e-118 429.9 248 81.5
CANSAT54G2163 Cannabis sativa HOM05D007819 ORTHO05D009848 1.4e-117 426.8 270 77.0
TAR623G0280 Trochodendron aralioides HOM05D007819 ORTHO05D009848 3.9e-117 425.2 259 78.0
PSO339G1273 Papaver somniferum HOM05D007819 ORTHO05D009848 2.6e-116 422.5 267 75.3
PSO384G2242 Papaver somniferum HOM05D007819 ORTHO05D009848 9.7e-116 420.6 257 77.0
Atru.chr3.3713 Acer truncatum HOM05D007819 ORTHO05D009848 1.7e-115 419.9 275 72.4
COL.COLO4_25254 Corchorus olitorius HOM05D007819 ORTHO05D009848 6.3e-115 417.9 265 75.5
Gohir.D05G077600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 2.4e-114 416.0 266 74.8
Gorai.009G079100 Gossypium raimondii HOM05D007819 ORTHO05D009848 2.4e-114 416.0 266 74.8
Oeu017391.1 Olea europaea HOM05D007819 ORTHO05D009848 3.1e-114 415.6 260 75.0
FvH4_3g33520 Fragaria vesca HOM05D007819 ORTHO05D009848 5.3e-114 414.8 212 96.7
Gohir.A05G074800 Gossypium hirsutum HOM05D007819 ORTHO05D009848 9.1e-114 414.1 266 74.1
Cc01_g11630 Coffea canephora HOM05D007819 ORTHO05D009848 1.0e-112 410.6 251 76.1
Lsat_1_v5_gn_2_25861 Lactuca sativa HOM05D007819 ORTHO05D009848 3.8e-112 408.7 240 77.1
Gohir.A05G074866 Gossypium hirsutum HOM05D007819 ORTHO05D009848 6.5e-112 407.9 266 72.9
Migut.N02626 Erythranthe guttata HOM05D007819 ORTHO05D009848 1.6e-110 403.3 278 69.4
Sopen06g001100 Solanum pennellii HOM05D007819 ORTHO05D009848 6.1e-110 401.4 258 72.5
Eucgr.B02464 Eucalyptus grandis HOM05D007819 ORTHO05D009848 6.7e-109 397.9 246 75.2
CiPaw.13G106200 Carya illinoinensis HOM05D007819 ORTHO05D009848 4.8e-107 391.7 247 72.1
CiPaw.14G077700 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.4e-106 390.2 253 71.5
QL01p036876 Quercus lobata HOM05D007819 ORTHO05D009848 2.7e-105 386.0 277 66.8
Hma1.2p1_2033F.1_g311900 Hydrangea macrophylla HOM05D007819 ORTHO05D009848 8.5e-104 380.9 243 71.2
Nitab4.5_0007369g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 4.2e-103 378.6 288 64.2
CiPaw.13G106300 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.0e-101 374.0 278 65.8
Prupe.6G093600 Prunus persica HOM05D007819 ORTHO05D009848 1.0e-101 374.0 209 85.6
CiPaw.14G077600 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.3e-99 367.1 271 65.7
Nitab4.5_0000888g0180 Nicotiana tabacum HOM05D007819 ORTHO05D009848 2.7e-97 359.4 296 59.1
DCAR_005475 Daucus carota HOM05D007819 ORTHO05D009848 1.5e-95 353.6 218 72.9
AUR62006507 Chenopodium quinoa HOM05D007819 ORTHO05D009848 5.5e-95 351.7 304 56.6
Mapoly0103s0031 Marchantia polymorpha HOM05D007819 ORTHO05D009848 4.9e-91 338.6 262 61.8
Lj1A183T52 Lonicera japonica HOM05D007819 ORTHO05D009848 9.2e-90 334.3 245 65.7
unitig_699.g19198 Utricularia gibba HOM05D007819 ORTHO05D009848 5.9e-89 331.6 286 57.3
Sc21g0003720 Simmondsia chinensis HOM05D007819 ORTHO05D009848 1.9e-87 326.6 211 72.0
HPP92_025075 Vanilla planifolia HOM05D007819 ORTHO05D009848 5.2e-85 318.5 253 58.5
Zm00001eb013150 Zea mays HOM05D007819 ORTHO05D009848 4.4e-84 315.5 254 58.7
Haze_23935 Corylus avellana HOM05D007819 ORTHO05D009848 6.4e-83 311.6 219 71.2
Ciclev10029813m.g Citrus clementina HOM05D007819 ORTHO05D009848 7.0e-82 308.1 249 62.2
Peaxi162Scf00389g00619 Petunia axillaris HOM05D007819 ORTHO05D009848 3.9e-80 302.4 247 60.7
SGA_v2.0_scaffold2G00920 Striga asiatica HOM05D007819 ORTHO05D009848 1.6e-78 297.0 236 61.0
Dinv32800 Davidia involucrata HOM05D007819 ORTHO05D009848 4.1e-74 282.3 188 70.2
Solyc06g005100.3 Solanum lycopersicum HOM05D007819 ORTHO05D009848 9.2e-74 281.2 175 71.4
Nitab4.5_0001578g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 3.5e-73 279.3 246 56.1
Pp3c21_1570 Physcomitrium patens HOM05D007819 ORTHO05D009848 6.6e-72 275.0 267 49.1
Nitab4.5_0000022g0250 Nicotiana tabacum HOM05D007819 ORTHO05D009848 2.1e-70 270.0 212 63.2
CAN.G1171.1 Capsicum annuum HOM05D007819 ORTHO05D009848 6.8e-69 265.0 242 57.9
GSVIVG01025124001 Vitis vinifera HOM05D007819 ORTHO05D009848 6.4e-67 258.5 196 64.3
AagrBONN_evm.TU.Sc2ySwM_344.1297 Anthoceros agrestis HOM05D007819 ORTHO05D009848 1.1e-66 257.7 285 46.7
Pp3c9_23950 Physcomitrium patens HOM05D007819 ORTHO05D009848 1.1e-66 257.7 256 49.2
Pp3c15_22830 Physcomitrium patens HOM05D007819 ORTHO05D009848 3.0e-64 249.6 256 47.3
Mapoly0155s0016 Marchantia polymorpha HOM05D007819 ORTHO05D009848 8.6e-64 248.1 269 45.4
AagrBONN_evm.TU.Sc2ySwM_344.3840 Anthoceros agrestis HOM05D007819 ORTHO05D009848 9.5e-63 244.6 291 44.0
Mapoly0008s0213 Marchantia polymorpha HOM05D007819 ORTHO05D009848 9.5e-63 244.6 268 46.3
PGSC0003DMG401025397 Solanum tuberosum HOM05D007819 ORTHO05D009848 4.7e-62 242.3 153 69.9
Mapoly0035s0019 Marchantia polymorpha HOM05D007819 ORTHO05D009848 5.2e-61 238.8 251 47.4
MSTRG.12613 Avicennia marina HOM05D007819 ORTHO05D009848 2.6e-60 236.5 169 66.3
AUR62025022 Chenopodium quinoa HOM05D007819 ORTHO05D009848 1.8e-53 213.8 228 49.1
Pp3c12_18930 Physcomitrium patens HOM05D000370 ORTHO05D009848 1.9e-47 193.7 243 38.3
Pp3c12_18938 Physcomitrium patens HOM05D000370 ORTHO05D009848 1.9e-47 193.7 243 38.3
Mapoly0088s0067 Marchantia polymorpha HOM05D000370 ORTHO05D001335 2.5e-47 193.4 243 38.7
Pp3c3_24540 Physcomitrium patens HOM05D007819 ORTHO05D009848 2.5e-47 193.4 243 37.4
Migut.O00707 Erythranthe guttata HOM05D007819 ORTHO05D009848 1.6e-46 190.7 141 62.4
EL10Ac9g22426 Beta vulgaris HOM05D007819 ORTHO05D009848 5.4e-42 175.6 136 61.8
MSTRG.12612 Avicennia marina HOM05D007819 ORTHO05D009848 7.4e-39 165.2 97 79.4
SalBow3G4000 Salvia bowleyana HOM05D007819 ORTHO05D009848 1.3e-38 164.5 104 76.0
CSS0001112 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 3.8e-35 152.9 97 75.3
CSS0025937 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 3.8e-35 152.9 97 75.3
QL01p036766 Quercus lobata HOM05D007819 ORTHO05D009848 1.2e-33 147.9 88 78.4
QL01p036758 Quercus lobata HOM05D007819 ORTHO05D009848 4.6e-33 146.0 92 71.7
Os03g0287100 Oryza sativa ssp. japonica HOM05D007819 ORTHO05D009848 1.0e-27 128.3 103 59.2
FAN11G3664 Fragaria x ananassa HOM05D007819 ORTHO05D009848 2.9e-27 126.7 66 98.5
Oeu012676.1 Olea europaea HOM05D007819 ORTHO05D009848 7.9e-25 118.6 70 75.7
EL10Ac9g22427 Beta vulgaris HOM05D007819 ORTHO05D009848 3.9e-24 116.3 117 50.4
CiPaw.09G094500 Carya illinoinensis HOM05D007819 ORTHO05D009848 5.5e-10 69.3 43 72.1
AagrBONN_evm.TU.Sc2ySwM_117.2524 Anthoceros agrestis HOM05D007819 ORTHO05D009848 6.1e-09 65.9 51 52.9


User provided reference genes

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