Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0060901 Rosa chinensis HOM05D000539 ORTHO05D000592 1.9e-40 168.7 85 100.0
RcHm_v2.0_Chr4g0395771 Rosa chinensis HOM05D000539 ORTHO05D000592 2.5e-32 141.7 75 93.3
RcHm_v2.0_Chr2g0114971 Rosa chinensis HOM05D000539 ORTHO05D000592 8.4e-28 126.7 75 81.3
FAN23G0124 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.8e-23 111.7 78 62.8
FAN03G1489 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN04G1988 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN05G3022 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN06G0584 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN06G3425 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN06G4635 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN07G1063 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN10G0147 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN13G0463 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN16G0584 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.7e-23 111.3 76 64.5
FAN16G2445 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN16G3090 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN17G0771 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.7e-23 111.3 76 64.5
FAN17G3107 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.7e-23 111.3 76 64.5
FAN20G0711 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN21G1450 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN23G1544 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN23G2368 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN23G2427 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN24G2468 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.7e-23 111.3 76 64.5
FAN26G0996 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN26G1947 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN26G3280 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN26G3431 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN27G0332 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN27G2859 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN28G0602 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN28G2676 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.7e-23 111.3 76 64.5
FAN28G2002 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.2e-23 110.5 80 62.5
FAN22G1565 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.4e-22 109.4 76 63.2
FAN17G2822 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.4e-22 108.6 76 63.2
FAN06G2632 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.3e-22 107.5 76 63.2
FAN07G0213 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.3e-22 107.5 73 64.4
FAN11G2362 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.3e-22 107.5 76 63.2
FAN25G0088 Fragaria x ananassa HOM05D000539 ORTHO05D000233 5.3e-22 107.5 76 63.2
FAN26G2944 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.3e-22 107.5 73 64.4
FAN19G2795 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.9e-22 107.1 78 62.8
FvH4_1g26740 Fragaria vesca HOM05D000539 ORTHO05D000592 1.2e-21 106.3 78 62.8
FvH4_3g31624 Fragaria vesca HOM05D000539 ORTHO05D000592 1.2e-21 106.3 77 66.2
RcHm_v2.0_Chr5g0072991 Rosa chinensis HOM05D000539 ORTHO05D000592 5.8e-21 104.0 69 66.7
FvH4_5g23293 Fragaria vesca HOM05D000539 ORTHO05D000233 7.6e-21 103.6 77 62.3
RcHm_v2.0_Chr4g0407991 Rosa chinensis HOM05D000539 ORTHO05D000233 1.0e-20 103.2 69 69.6
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 1.3e-20 102.8 80 60.0
RcHm_v2.0_Chr2g0102071 Rosa chinensis HOM05D000539 ORTHO05D000592 2.9e-20 101.7 69 68.1
RcHm_v2.0_Chr6g0272451 Rosa chinensis HOM05D000539 ORTHO05D000592 4.9e-20 100.9 69 65.2
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 2.5e-19 98.6 72 62.5
RcHm_v2.0_Chr5g0043821 Rosa chinensis HOM05D000539 ORTHO05D000592 3.2e-19 98.2 69 66.7
FAN17G2525 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.2e-19 97.8 66 66.7
FAN22G1737 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.7e-18 95.1 61 67.2
FAN09G2875 Fragaria x ananassa HOM05D000539 ORTHO05D000233 7.9e-18 93.6 66 65.2
RcHm_v2.0_Chr2g0140381 Rosa chinensis HOM05D000539 ORTHO05D000592 1.3e-17 92.8 75 57.3
RcHm_v2.0_Chr5g0045831 Rosa chinensis HOM05D000539 ORTHO05D000592 8.7e-17 90.1 69 60.9
FAN16G1455 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-16 89.7 61 65.6
FAN23G1482 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-16 89.7 61 65.6
RcHm_v2.0_Chr3g0495531 Rosa chinensis HOM05D000539 ORTHO05D000592 7.4e-16 87.0 84 54.8
FvH4_6g31293 Fragaria vesca HOM05D000539 ORTHO05D000233 4.8e-15 84.3 83 44.6
FvH4_3g18051 Fragaria vesca HOM05D000539 ORTHO05D000592 6.3e-15 84.0 84 45.2
RcHm_v2.0_Chr2g0095181 Rosa chinensis HOM05D000539 ORTHO05D000233 6.3e-15 84.0 76 52.6
FvH4_3g23522 Fragaria vesca HOM05D000539 ORTHO05D000233 8.2e-15 83.6 83 43.4
FvH4_4g10091 Fragaria vesca HOM05D000539 ORTHO05D000592 8.2e-15 83.6 70 52.9
FAN14G2497 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.2e-15 83.6 84 45.2
RcHm_v2.0_Chr7g0201281 Rosa chinensis HOM05D000539 ORTHO05D000233 8.2e-15 83.6 69 59.4
RcHm_v2.0_Chr3g0494841 Rosa chinensis HOM05D000539 ORTHO05D000592 1.1e-14 83.2 83 51.8
FvH4_3g19213 Fragaria vesca HOM05D000539 ORTHO05D000233 1.4e-14 82.8 75 49.3
FvH4_3g31712 Fragaria vesca HOM05D000539 ORTHO05D000592 1.4e-14 82.8 75 49.3
FAN08G3376 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.8e-14 82.4 74 52.7
FvH4_6g12431 Fragaria vesca HOM05D000539 ORTHO05D000233 3.1e-14 81.6 73 49.3
FvH4_3g30441 Fragaria vesca HOM05D000539 ORTHO05D000592 9.0e-14 80.1 75 48.0
FAN22G0150 Fragaria x ananassa HOM05D000539 ORTHO05D000592 9.0e-14 80.1 75 48.0
FvH4_1g20121 Fragaria vesca HOM05D000539 ORTHO05D000233 1.5e-13 79.3 78 48.7
FvH4_7g02993 Fragaria vesca HOM05D000539 ORTHO05D000233 1.5e-13 79.3 75 48.0
FvH4_4g05701 Fragaria vesca HOM05D000539 ORTHO05D000233 2.0e-13 79.0 83 41.0
FvH4_4g10052 Fragaria vesca HOM05D000539 ORTHO05D000233 2.6e-13 78.6 70 48.6
FAN20G0505 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.6e-13 78.6 73 47.9
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 2.6e-13 78.6 81 46.9
FvH4_7g16901 Fragaria vesca HOM05D000539 ORTHO05D000592 4.5e-13 77.8 68 50.0
FAN25G3215 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.5e-13 77.8 53 64.2
FAN24G0372 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.9e-13 77.4 71 50.7
RcHm_v2.0_Chr3g0485221 Rosa chinensis HOM05D000539 ORTHO05D000233 5.9e-13 77.4 69 52.2
FvH4_6g23351 Fragaria vesca HOM05D000539 ORTHO05D000233 1.7e-12 75.9 75 46.7
FAN19G1975 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.2e-12 75.5 72 51.4
FvH4_6g12903 Fragaria vesca HOM05D000539 ORTHO05D000592 2.9e-12 75.1 72 50.0
FAN12G1860 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.9e-12 75.1 68 47.1
FvH4_2g04949 Fragaria vesca HOM05D000539 ORTHO05D000233 5.0e-12 74.3 75 46.7
FAN07G0124 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.0e-12 74.3 52 63.5
FvH4_2g07751 Fragaria vesca HOM05D000539 ORTHO05D000233 6.5e-12 73.9 67 52.2
FAN26G3042 Fragaria x ananassa HOM05D000539 ORTHO05D000233 8.5e-12 73.6 64 50.0
RcHm_v2.0_Chr5g0072071 Rosa chinensis HOM05D000539 ORTHO05D000592 8.5e-12 73.6 81 49.4
FvH4_7g01021 Fragaria vesca HOM05D000539 ORTHO05D000592 1.1e-11 73.2 66 45.5
FAN06G3581 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-11 73.2 66 45.5
FAN19G1594 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-11 73.2 72 50.0
FvH4_3g14252 Fragaria vesca HOM05D000539 ORTHO05D000592 1.4e-11 72.8 67 50.7
FvH4_6g32742 Fragaria vesca HOM05D000539 ORTHO05D000233 1.4e-11 72.8 70 44.3
FAN07G0141 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.9e-11 72.4 66 48.5
FAN12G3927 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.5e-11 72.0 50 64.0
FAN26G3285 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.5e-11 72.0 50 64.0
FvH4_4g09773 Fragaria vesca HOM05D000539 ORTHO05D000233 3.2e-11 71.6 66 50.0
FvH4_7g09681 Fragaria vesca HOM05D000539 ORTHO05D000233 3.2e-11 71.6 69 44.9
FvH4_3g30982 Fragaria vesca HOM05D000539 ORTHO05D000233 4.2e-11 71.2 69 44.9
FAN02G4277 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.2e-11 71.2 69 44.9
FAN17G2973 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.2e-10 69.7 45 64.4
FAN20G1324 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.2e-10 69.7 45 64.4
FvH4_6g22903 Fragaria vesca HOM05D000539 ORTHO05D000592 1.6e-10 69.3 74 47.3
FvH4_4g04601 Fragaria vesca HOM05D000539 ORTHO05D000233 2.7e-10 68.6 69 43.5
FAN22G0636 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.6e-10 68.2 69 42.0
FAN28G1329 Fragaria x ananassa HOM05D000723 ORTHO05D001760 4.6e-10 67.8 83 41.0
FAN23G1229 Fragaria x ananassa HOM05D000539 ORTHO05D000233 6.1e-10 67.4 69 42.0
DCAR_031676 Daucus carota HOM05D000539 ORTHO05D000233 7.9e-10 67.0 74 43.2
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 7.9e-10 67.0 83 41.0
FvH4_1g29731 Fragaria vesca HOM05D000539 ORTHO05D000592 7.9e-10 67.0 66 43.9
FAN19G0052 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.9e-10 67.0 69 42.0
Aqoxy6G01916 Aquilegia oxysepala HOM05D000539 ORTHO05D000233 1.0e-09 66.6 55 49.1
FvH4_7g07223 Fragaria vesca HOM05D000539 ORTHO05D000592 1.0e-09 66.6 42 66.7
RcHm_v2.0_Chr4g0405551 Rosa chinensis HOM05D000539 ORTHO05D000592 1.0e-09 66.6 72 40.3
DCAR_032131 Daucus carota HOM05D000539 ORTHO05D000592 1.4e-09 66.2 59 50.8
FAN15G1280 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.8e-09 65.9 47 57.4
FAN22G0175 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.8e-09 65.9 59 49.2
FAN19G0390 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.3e-09 65.5 84 38.1
FAN19G0444 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.3e-09 65.5 68 41.2
RcHm_v2.0_Chr1g0316591 Rosa chinensis HOM05D000539 ORTHO05D000592 3.0e-09 65.1 72 43.1
FvH4_4g09822 Fragaria vesca HOM05D000107 ORTHO05D000062 1.1e-08 63.2 59 47.5
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 1.9e-08 62.4 68 44.1
FAN23G1195 Fragaria x ananassa HOM05D000723 ORTHO05D001760 2.5e-08 62.0 83 38.6
FAN24G0755 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.3e-08 61.2 69 42.0
Hma1.2p1_1855F.1_g305420 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 5.7e-08 60.8 76 40.8
RcHm_v2.0_Chr2g0141551 Rosa chinensis HOM05D000539 ORTHO05D000592 5.7e-08 60.8 55 54.5
FvH4_1g25001 Fragaria vesca HOM05D000539 ORTHO05D000233 7.4e-08 60.5 66 45.5
Hma1.2p1_0043F.1_g025950 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 7.4e-08 60.5 76 40.8
Hma1.2p1_0351F.1_g132970 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 7.4e-08 60.5 57 47.4
RcHm_v2.0_Chr4g0401821 Rosa chinensis HOM05D000539 ORTHO05D000592 7.4e-08 60.5 69 42.0
RcHm_v2.0_Chr6g0291801 Rosa chinensis HOM05D000539 ORTHO05D000592 9.7e-08 60.1 41 61.0
RcHm_v2.0_Chr1g0352291 Rosa chinensis HOM05D000539 ORTHO05D000233 1.7e-07 59.3 56 46.4
RcHm_v2.0_Chr3g0460901 Rosa chinensis HOM05D000539 ORTHO05D000233 1.7e-07 59.3 56 46.4
Hma1.2p1_0013F.1_g008410 Hydrangea macrophylla HOM05D000539 ORTHO05D000233 2.2e-07 58.9 57 45.6
FAN07G2619 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.8e-07 58.5 34 67.6
FAN10G0065 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.8e-07 58.5 34 67.6
MELO3C016215.2 Cucumis melo HOM05D000539 ORTHO05D000233 3.7e-07 58.2 71 40.8
RcHm_v2.0_Chr2g0160781 Rosa chinensis HOM05D000539 ORTHO05D010294 4.8e-07 57.8 69 43.5
RcHm_v2.0_Chr7g0191841 Rosa chinensis HOM05D000539 ORTHO05D000233 4.8e-07 57.8 69 43.5
RcHm_v2.0_Chr7g0196691 Rosa chinensis HOM05D000539 ORTHO05D000233 4.8e-07 57.8 69 43.5
Ciclev10002181m.g Citrus clementina HOM05D000539 ORTHO05D000592 6.3e-07 57.4 69 37.7
Rhsim10G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.3e-07 57.4 53 47.2
RcHm_v2.0_Chr7g0211271 Rosa chinensis HOM05D000539 ORTHO05D000233 6.3e-07 57.4 69 43.5
CsaV3_4G007110 Cucumis sativus L. HOM05D000539 ORTHO05D000233 8.2e-07 57.0 71 40.8
RcHm_v2.0_Chr3g0482291 Rosa chinensis HOM05D000539 ORTHO05D000592 1.1e-06 56.6 70 44.3
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 1.1e-06 56.6 70 44.3
FvH4_2g07146 Fragaria vesca HOM05D000539 ORTHO05D000233 1.4e-06 56.2 69 39.1
FvH4_5g20921 Fragaria vesca HOM05D000539 ORTHO05D000233 1.4e-06 56.2 69 37.7
FAN22G0206 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.4e-06 56.2 69 37.7
FAN22G1432 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.4e-06 56.2 69 37.7
FAN25G1336 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.4e-06 56.2 63 39.7
FAN28G0205 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.4e-06 56.2 62 38.7
RcHm_v2.0_Chr4g0385451 Rosa chinensis HOM05D000539 ORTHO05D000233 1.4e-06 56.2 69 43.5
SGA_v2.0_scaffold166G38311 Striga asiatica HOM05D002644 ORTHO05D003267 1.8e-06 55.8 70 40.0
FvH4_4g08651 Fragaria vesca HOM05D000539 ORTHO05D000233 2.4e-06 55.5 69 37.7
Prupe.7G026800 Prunus persica HOM05D000539 ORTHO05D000592 2.4e-06 55.5 69 34.8
FAN18G4025 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.1e-06 54.7 69 37.7
RcHm_v2.0_Chr1g0318231 Rosa chinensis HOM05D000539 ORTHO05D000233 4.1e-06 54.7 70 45.7
Rhsim02G0146100 Rhododendron simsii HOM05D000539 ORTHO05D000233 5.3e-06 54.3 53 43.4
SGA_v2.0_scaffold191G40501 Striga asiatica HOM05D002644 ORTHO05D003267 5.3e-06 54.3 70 38.6
FvH4_5g26251 Fragaria vesca HOM05D000539 ORTHO05D000233 6.9e-06 53.9 69 36.2
FvH4_5g31943 Fragaria vesca HOM05D000539 ORTHO05D000233 6.9e-06 53.9 62 40.3
RcHm_v2.0_Chr2g0145261 Rosa chinensis HOM05D000539 ORTHO05D000233 9.1e-06 53.5 69 43.5
Sed0019036 Sechium edule HOM05D000539 ORTHO05D000592 9.1e-06 53.5 63 41.3


User provided reference genes

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