Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 2.9e-85 318.5 164 100.0
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 9.1e-71 270.4 161 83.9
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 2.6e-70 268.9 164 82.3
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 6.5e-69 264.2 161 83.2
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 1.9e-68 262.7 161 81.4
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 5.2e-58 228.0 159 69.2
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 8.8e-58 227.3 160 69.4
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 2.6e-57 225.7 160 68.8
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 1.7e-56 223.0 160 68.8
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 2.2e-56 222.6 159 71.1
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 3.7e-56 221.9 163 68.1
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.4e-55 219.2 147 71.4
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 4.1e-55 218.4 165 64.2
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 4.1e-55 218.4 165 63.6
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 1.6e-54 216.5 162 66.7
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 1.0e-53 213.8 161 66.5
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 1.0e-53 213.8 160 65.6
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 1.3e-53 213.4 161 66.5
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 3.8e-53 211.8 159 66.7
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 5.0e-53 211.5 159 62.9
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 1.1e-52 210.3 159 66.7
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 1.1e-52 210.3 161 65.8
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 2.5e-52 209.1 159 65.4
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 2.5e-52 209.1 163 66.3
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 7.2e-52 207.6 162 62.3
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 7.2e-52 207.6 163 64.4
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 6.1e-51 204.5 144 68.1
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 6.1e-51 204.5 161 62.1
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 1.0e-50 203.8 149 67.1
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 1.0e-50 203.8 159 67.9
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 1.4e-50 203.4 162 66.7
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 1.8e-50 203.0 159 64.2
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 3.0e-50 202.2 160 60.0
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 4.0e-50 201.8 163 63.8
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 8.9e-50 200.7 162 61.1
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 1.2e-49 200.3 151 64.9
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 1.2e-49 200.3 159 67.3
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 1.2e-49 200.3 156 60.3
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 1.5e-49 199.9 140 64.3
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 2.6e-49 199.1 158 62.0
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 4.4e-49 198.4 157 61.1
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 4.4e-49 198.4 159 62.9
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 9.8e-49 197.2 144 66.0
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 9.8e-49 197.2 146 70.5
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 9.8e-49 197.2 149 65.1
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 1.3e-48 196.8 159 62.9
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 1.3e-48 196.8 157 59.9
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 1.3e-48 196.8 158 62.7
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 2.2e-48 196.1 143 65.7
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 3.7e-48 195.3 165 59.4
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 3.7e-48 195.3 160 59.4
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 4.9e-48 194.9 114 83.3
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 4.9e-48 194.9 115 84.3
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 6.3e-48 194.5 159 60.4
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 8.3e-48 194.1 161 60.2
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 1.1e-47 193.7 141 65.2
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 1.4e-47 193.4 167 57.5
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 1.8e-47 193.0 165 57.6
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 1.8e-47 193.0 166 59.6
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 2.4e-47 192.6 141 61.0
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 2.4e-47 192.6 146 63.0
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 2.4e-47 192.6 164 57.9
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 3.1e-47 192.2 141 66.0
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 3.1e-47 192.2 157 58.6
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 4.1e-47 191.8 141 64.5
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 9.2e-47 190.7 144 63.2
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 9.2e-47 190.7 164 55.5
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 1.2e-46 190.3 160 56.9
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.2e-46 190.3 160 58.1
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 1.6e-46 189.9 160 56.9
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 2.0e-46 189.5 160 57.5
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 2.0e-46 189.5 158 62.7
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 2.7e-46 189.1 159 59.1
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 2.7e-46 189.1 141 63.8
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 2.7e-46 189.1 159 56.6
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 4.5e-46 188.3 159 56.6
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 5.9e-46 188.0 159 58.5
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 7.8e-46 187.6 159 59.1
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 7.8e-46 187.6 162 57.4
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 1.0e-45 187.2 140 63.6
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 1.0e-45 187.2 140 62.1
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 1.7e-45 186.4 164 57.3
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 5.0e-45 184.9 157 56.7
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 8.6e-45 184.1 135 65.2
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 1.1e-44 183.7 155 56.8
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 1.5e-44 183.3 146 61.6
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 2.5e-44 182.6 160 55.6
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 2.1e-43 179.5 160 55.6
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 2.8e-43 179.1 153 59.5
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 6.1e-43 177.9 155 56.1
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 6.1e-43 177.9 156 54.5
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 1.0e-42 177.2 139 61.9
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 1.4e-42 176.8 157 56.7
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 1.4e-42 176.8 140 60.0
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 2.3e-42 176.0 145 60.0
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 3.0e-42 175.6 155 58.7
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 5.2e-42 174.9 167 53.9
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 2.0e-41 172.9 128 63.3
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 9.8e-41 170.6 136 58.1
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 2.2e-40 169.5 136 60.3
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 6.4e-40 167.9 146 54.8
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 3.2e-39 165.6 116 63.8
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 9.2e-39 164.1 153 53.6
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 1.3e-37 160.2 162 53.1
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 2.3e-37 159.5 128 64.8
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 5.0e-37 158.3 137 56.2
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 2.5e-36 156.0 147 50.3
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 2.8e-35 152.5 149 51.0
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 2.3e-34 149.4 110 62.7
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 6.8e-34 147.9 132 53.0
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 8.3e-32 141.0 143 51.7
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 1.1e-31 140.6 157 47.1
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 4.7e-27 125.2 139 41.7
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 1.4e-26 123.6 134 41.0
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 7.5e-25 117.9 76 71.1
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 9.9e-25 117.5 138 44.2
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 1.6e-22 110.2 89 65.2
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 1.6e-22 110.2 142 40.1
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 6.0e-22 108.2 105 51.4
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 1.3e-21 107.1 77 68.8
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 6.6e-21 104.8 142 44.4
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 3.3e-20 102.4 89 56.2
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 3.6e-19 99.0 126 39.7
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 5.2e-18 95.1 151 34.4
PRCOL_00002156 Prasinoderma coloniale HOM05D002419 ORTHO05D008128 1.9e-15 86.7 137 31.4
CARHR181070 Cardamine hirsuta HOM05D002419 ORTHO05D008128 2.1e-14 83.2 63 60.3
BcaB01g04652 Brassica carinata HOM05D000125 ORTHO05D008128 1.0e-13 80.9 68 55.9
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 3.3e-12 75.9 76 47.4
Cre12.g560100 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D008128 2.1e-11 73.2 70 47.1
Ciclev10029934m.g Citrus clementina HOM05D002419 ORTHO05D008128 3.6e-11 72.4 41 70.7
Actinidia20438 Actinidia chinensis HOM05D002419 ORTHO05D008128 3.1e-10 69.3 53 66.0


User provided reference genes

Program Settings