Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0060561 Rosa chinensis HOM05D000181 ORTHO05D007068 1.4e-65 252.7 121 100.0
Prupe.4G132700 Prunus persica HOM05D000181 ORTHO05D007068 4.1e-44 181.4 105 78.1
MD05G1229800 Malus domestica HOM05D000181 ORTHO05D007068 5.4e-44 181.0 105 77.1
RcHm_v2.0_Chr5g0024281 Rosa chinensis HOM05D000181 ORTHO05D007068 1.1e-41 173.3 105 79.0
Haze_07800 Corylus avellana HOM05D000181 ORTHO05D007068 9.5e-41 170.2 105 67.6
FvH4_3g14760 Fragaria vesca HOM05D000181 ORTHO05D007068 3.0e-39 165.2 105 77.1
FAN11G1148 Fragaria x ananassa HOM05D000181 ORTHO05D007068 6.8e-39 164.1 105 76.2
FAN16G1891 Fragaria x ananassa HOM05D000181 ORTHO05D007068 8.8e-39 163.7 105 76.2
FAN21G2082 Fragaria x ananassa HOM05D000181 ORTHO05D007068 2.6e-38 162.2 105 75.2
QL04p087205 Quercus lobata HOM05D000181 ORTHO05D007068 7.5e-38 160.6 105 67.6
Sed0005173 Sechium edule HOM05D000181 ORTHO05D007068 9.2e-36 153.7 103 65.0
FAN25G2563 Fragaria x ananassa HOM05D000181 ORTHO05D007068 2.0e-35 152.5 105 71.4
ClCG02G018660 Citrullus lanatus HOM05D000181 ORTHO05D007068 1.7e-34 149.4 104 61.5
TAR627G0133 Trochodendron aralioides HOM05D000181 ORTHO05D007068 2.9e-34 148.7 104 62.5
CSS0042976 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D007068 5.0e-34 147.9 104 61.5
COL.COLO4_19749 Corchorus olitorius HOM05D000181 ORTHO05D007068 1.5e-33 146.4 107 57.9
Gohir.D13G128800 Gossypium hirsutum HOM05D000181 ORTHO05D007068 2.1e-32 142.5 101 56.4
Gorai.013G144900 Gossypium raimondii HOM05D000181 ORTHO05D007068 2.1e-32 142.5 101 56.4
Nn7g38234 Nelumbo nucifera HOM05D000181 ORTHO05D007068 2.1e-32 142.5 102 59.8
Potri.010G171300 Populus trichocarpa HOM05D000181 ORTHO05D007068 1.4e-31 139.8 106 58.5
GSVIVG01036763001 Vitis vinifera HOM05D000181 ORTHO05D007068 1.4e-31 139.8 104 58.7
Dinv42476 Davidia involucrata HOM05D000181 ORTHO05D007068 1.8e-31 139.4 103 56.3
Duzib213G0016 Durio zibethinus HOM05D000181 ORTHO05D007068 2.3e-31 139.0 107 57.9
Actinidia37132 Actinidia chinensis HOM05D000181 ORTHO05D007068 1.2e-30 136.7 104 55.8
PGR031G2481 Punica granatum HOM05D000181 ORTHO05D007068 2.0e-30 136.0 112 52.7
Thecc.07G182000 Theobroma cacao HOM05D000181 ORTHO05D007068 5.7e-30 134.4 107 56.1
Manes.06G176300 Manihot esculenta HOM05D000181 ORTHO05D007068 1.3e-29 133.3 105 56.2
TWI38G0335 Tripterygium wilfordii HOM05D000181 ORTHO05D007068 2.9e-29 132.1 105 57.1
Solyc02g079000.4 Solanum lycopersicum HOM05D000181 ORTHO05D007068 4.9e-29 131.3 111 54.1
Sopen02g023810 Solanum pennellii HOM05D000181 ORTHO05D007068 4.9e-29 131.3 111 54.1
CsaV3_6G013510 Cucumis sativus L. HOM05D000181 ORTHO05D007068 1.4e-28 129.8 104 51.0
MSTRG.7078 Avicennia marina HOM05D000181 ORTHO05D007068 3.2e-28 128.6 105 54.3
DCAR_013723 Daucus carota HOM05D000181 ORTHO05D007068 7.0e-28 127.5 105 52.4
Aqoxy1G01434 Aquilegia oxysepala HOM05D000181 ORTHO05D007068 2.0e-27 125.9 104 50.0
A07p27070 Brassica napus HOM05D000181 ORTHO05D007068 2.0e-27 125.9 105 51.4
arahy.Tifrunner.gnm1.ann1.1IB7AW Arachis hypogaea HOM05D000181 ORTHO05D007068 2.7e-27 125.6 105 50.5
arahy.Tifrunner.gnm1.ann1.HBHB6G Arachis hypogaea HOM05D000181 ORTHO05D007068 2.7e-27 125.6 105 50.5
Eucgr.F04462 Eucalyptus grandis HOM05D000181 ORTHO05D007068 5.9e-27 124.4 105 52.4
MELO3C019635.2 Cucumis melo HOM05D000181 ORTHO05D007068 7.8e-27 124.0 104 51.9
MD10G1209600 Malus domestica HOM05D000181 ORTHO05D028538 7.8e-27 124.0 87 70.1
C06p29810 Brassica napus HOM05D000181 ORTHO05D007068 1.0e-26 123.6 105 51.4
PSO675G5464 Papaver somniferum HOM05D000181 ORTHO05D007068 1.0e-26 123.6 105 53.3
Sabra10G0130900 Salix brachista HOM05D000181 ORTHO05D007068 1.0e-26 123.6 106 53.8
BolC6t38142H Brassica oleracea HOM05D000181 ORTHO05D007068 2.3e-26 122.5 105 51.4
BcaB02g07224 Brassica carinata HOM05D000181 ORTHO05D007068 3.9e-26 121.7 105 49.5
Ciclev10004242m.g Citrus clementina HOM05D000181 ORTHO05D007068 6.6e-26 120.9 105 55.2
Migut.M01524 Erythranthe guttata HOM05D000181 ORTHO05D007068 1.1e-25 120.2 105 51.4
BraA07t30351Z Brassica rapa HOM05D000181 ORTHO05D007068 1.5e-25 119.8 105 51.4
CAN.G891.3 Capsicum annuum HOM05D000181 ORTHO05D007068 2.5e-25 119.0 111 50.5
THA.LOC104812371 Tarenaya hassleriana HOM05D000181 ORTHO05D007068 2.5e-25 119.0 105 51.4
Oeu034062.1 Olea europaea HOM05D000181 ORTHO05D007068 3.3e-25 118.6 104 51.0
Thhalv10018071m.g Eutrema salsugineum HOM05D000181 ORTHO05D007068 4.3e-25 118.2 105 48.6
AT1G79560 Arabidopsis thaliana HOM05D000181 ORTHO05D007068 1.2e-24 116.7 105 48.6
CARHR073220 Cardamine hirsuta HOM05D000181 ORTHO05D007068 1.2e-24 116.7 105 49.5
Sp5g34620 Schrenkiella parvula HOM05D000181 ORTHO05D007068 1.2e-24 116.7 105 46.7
SGA_v2.0_scaffold7G03612 Striga asiatica HOM05D000181 ORTHO05D007068 1.6e-24 116.3 105 47.6
Lalb_Chr01g0007221 Lupinus albus HOM05D000181 ORTHO05D007068 3.6e-24 115.2 107 53.3
unitig_748.g7620 Utricularia gibba HOM05D000181 ORTHO05D007068 3.6e-24 115.2 104 50.0
PSO675G4612 Papaver somniferum HOM05D000181 ORTHO05D007068 4.7e-24 114.8 104 51.9
AL2G40200 Arabidopsis lyrata HOM05D000181 ORTHO05D007068 1.4e-23 113.2 105 49.5
Aa31LG4G1430 Aethionema arabicum HOM05D000181 ORTHO05D007068 2.3e-23 112.5 105 44.8
Carub.0002s2642 Capsella rubella HOM05D000181 ORTHO05D007068 1.2e-22 110.2 105 50.5
Glyma.08G237500 Glycine max HOM05D000181 ORTHO05D007068 4.4e-22 108.2 105 49.5
Lj3g0011719 Lotus japonicus HOM05D000181 ORTHO05D007068 7.5e-22 107.5 101 48.5
Phvul.011G177500 Phaseolus vulgaris HOM05D000181 ORTHO05D007068 7.5e-22 107.5 105 46.7
ATR0752G106 Amborella trichopoda HOM05D000181 ORTHO05D007068 1.3e-21 106.7 105 40.0
AUR62032086 Chenopodium quinoa HOM05D000181 ORTHO05D007068 1.7e-21 106.3 105 45.7
AUR62040741 Chenopodium quinoa HOM05D000181 ORTHO05D007068 1.7e-21 106.3 105 44.8
Sc10g0005160 Simmondsia chinensis HOM05D000181 ORTHO05D007068 2.2e-21 105.9 102 50.0
AUR62041059 Chenopodium quinoa HOM05D000181 ORTHO05D007068 4.9e-21 104.8 105 44.8
Ah.16g106100 Amaranthus hybridus HOM05D000181 ORTHO05D007068 6.4e-21 104.4 102 50.0
Nitab4.5_0006529g0020 Nicotiana tabacum HOM05D000181 ORTHO05D007068 1.1e-20 103.6 105 48.6
CANSAT80G1988 Cannabis sativa HOM05D000181 ORTHO05D007068 1.4e-20 103.2 105 46.7
Lsat_1_v5_gn_7_69480 Lactuca sativa HOM05D000181 ORTHO05D007068 1.4e-20 103.2 104 45.2
Nitab4.5_0000388g0100 Nicotiana tabacum HOM05D000181 ORTHO05D007068 2.4e-20 102.4 105 48.6
Lj2C14G7 Lonicera japonica HOM05D000181 ORTHO05D007068 1.2e-19 100.1 105 42.9
HanXRQChr03g0078201 Helianthus annuus HOM05D000181 ORTHO05D007068 1.6e-19 99.8 104 45.2
Psat4g137600 Pisum sativum HOM05D000181 ORTHO05D007068 2.3e-18 95.9 104 44.2
HPP92_000847 Vanilla planifolia HOM05D000181 ORTHO05D007068 3.0e-18 95.5 101 43.6
Ca_25910_v3 Cicer arietinum L. HOM05D000181 ORTHO05D007068 1.1e-17 93.6 104 45.2
TPR.G9423 Trifolium pratense HOM05D000181 ORTHO05D007068 4.3e-17 91.7 104 41.3
PSO675G7110 Papaver somniferum HOM05D000181 ORTHO05D007068 7.3e-17 90.9 84 48.8
MBI18_g34711_MAGBIO Magnolia biondii HOM05D000181 ORTHO05D028538 1.2e-16 90.1 74 55.4
VMungo1127G0531 Vigna mungo HOM05D000002 ORTHO05D007068 2.8e-16 89.0 148 33.8
Oeu044451.1 Olea europaea HOM05D000181 ORTHO05D007068 4.7e-16 88.2 104 43.3
ECA240G0620 Erigeron canadensis HOM05D000181 ORTHO05D007068 8.1e-16 87.4 98 42.9
EL10Ac2g03239 Beta vulgaris HOM05D000181 ORTHO05D007068 1.8e-15 86.3 105 39.0
SEGI_28435 Sequoiadendron giganteum HOM05D000181 ORTHO05D007068 6.8e-15 84.3 102 41.2
Cc00_g33510 Coffea canephora HOM05D039105 ORTHO05D029056 6.4e-13 77.8 101 40.6
Medtr8g056860 Medicago truncatula HOM05D000181 ORTHO05D007068 1.9e-12 76.3 104 39.4
Cc05_g01540 Coffea canephora HOM05D039105 ORTHO05D029056 2.7e-11 72.4 98 37.8
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 7.8e-11 70.9 59 54.2
Cpa.g.sc32.40 Carica papaya HOM05D000181 ORTHO05D028538 2.8e-08 62.4 74 43.2
Pp3c7_7530 Physcomitrium patens HOM05D000181 ORTHO05D007068 8.1e-08 60.8 126 31.0
Peaxi162Scf00006g01615 Petunia axillaris HOM05D000181 ORTHO05D007068 5.2e-07 58.2 111 37.8
AagrBONN_evm.TU.Sc2ySwM_344.4106 Anthoceros agrestis HOM05D000181 ORTHO05D007068 6.8e-07 57.8 67 34.3
MD10G1209500 Malus domestica HOM05D000181 ORTHO05D029056 2.0e-06 56.2 32 78.1


User provided reference genes

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