Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 2.1e-39 165.2 83 100.0
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 7.7e-34 146.7 82 91.5
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 6.5e-33 143.7 82 87.8
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.5e-33 143.7 82 87.8
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.5e-32 140.6 87 83.9
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.6e-31 139.0 82 85.4
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 1.0e-30 136.3 82 89.0
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.8e-30 135.6 82 89.0
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.8e-30 133.3 82 86.6
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.3e-28 129.4 89 82.0
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.2e-26 122.9 82 75.6
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 8.5e-17 90.1 83 62.7
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 3.6e-15 84.7 82 56.1
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 6.1e-15 84.0 83 55.4
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.4e-14 82.8 83 56.6
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 2.0e-13 79.0 82 58.5
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 4.4e-13 77.8 82 58.5
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 2.2e-12 75.5 82 57.3
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.7e-12 74.7 83 49.4
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.7e-12 74.7 83 49.4
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.7e-12 74.7 82 48.8
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.8e-12 74.3 82 47.6
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 4.8e-12 74.3 81 50.6
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 6.3e-12 73.9 82 54.9
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 6.3e-12 73.9 82 54.9
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.3e-12 73.9 82 48.8
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 8.3e-12 73.6 84 54.8
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 8.3e-12 73.6 83 48.2
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 8.3e-12 73.6 82 52.4
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.1e-11 73.2 82 47.6
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.4e-11 72.8 82 52.4
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 3.1e-11 71.6 104 48.1
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 4.1e-11 71.2 80 48.8
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.6e-10 69.3 77 53.2
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.0e-10 68.9 82 45.1
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 2.7e-10 68.6 82 52.4
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 3.5e-10 68.2 82 52.4
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 7.7e-10 67.0 74 47.3
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 7.7e-10 67.0 80 42.5
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.0e-09 66.6 74 47.3
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 2.2e-09 65.5 82 51.2
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 2.9e-09 65.1 83 53.0
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 3.8e-09 64.7 86 47.7
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 6.5e-09 63.9 82 46.3
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.1e-08 63.2 91 45.1
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.1e-08 63.2 82 47.6
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.5e-08 62.8 78 50.0
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.5e-08 62.8 115 39.1
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.9e-08 62.4 82 47.6
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 3.2e-08 61.6 74 43.2
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.2e-08 61.6 52 67.3
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 4.2e-08 61.2 77 49.4
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 4.2e-08 61.2 76 44.7
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 4.2e-08 61.2 82 50.0
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 4.2e-08 61.2 75 49.3
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 5.5e-08 60.8 82 47.6
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 5.5e-08 60.8 80 48.8
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 7.2e-08 60.5 51 64.7
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 7.2e-08 60.5 61 50.8
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 9.4e-08 60.1 82 47.6
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 1.2e-07 59.7 48 60.4
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 1.2e-07 59.7 48 60.4
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.2e-07 59.7 84 46.4
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.2e-07 59.7 49 59.2
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.2e-07 59.7 82 46.3
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.2e-07 59.7 56 58.9
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 1.6e-07 59.3 82 41.5
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 2.1e-07 58.9 49 59.2
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 2.7e-07 58.5 82 46.3
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 3.6e-07 58.2 62 51.6
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 4.7e-07 57.8 77 48.1
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 6.1e-07 57.4 42 66.7
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 6.1e-07 57.4 49 57.1
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 8.0e-07 57.0 36 69.4
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 8.0e-07 57.0 66 42.4
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 8.0e-07 57.0 82 42.7
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.0e-06 56.6 49 57.1
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 1.0e-06 56.6 47 57.4
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 1.0e-06 56.6 47 57.4
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.0e-06 56.6 82 43.9
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.0e-06 56.6 55 54.5
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.0e-06 56.6 82 46.3
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 1.8e-06 55.8 69 46.4
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 1.8e-06 55.8 60 50.0
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 1.8e-06 55.8 60 50.0
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 1.8e-06 55.8 60 50.0
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 1.8e-06 55.8 49 55.1
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.8e-06 55.8 48 56.2
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 2.3e-06 55.5 57 52.6
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 3.0e-06 55.1 49 55.1
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 3.0e-06 55.1 83 44.6
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 4.0e-06 54.7 49 53.1
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 4.0e-06 54.7 82 43.9
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 4.0e-06 54.7 82 41.5
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 6.8e-06 53.9 81 42.0
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 8.8e-06 53.5 82 45.1
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 8.8e-06 53.5 82 43.9
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 8.8e-06 53.5 49 59.2


User provided reference genes

Program Settings