Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 0.0e+00 1273.5 676 100.0
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 0.0e+00 1176.4 676 91.1
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 0.0e+00 1169.8 676 91.6
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 0.0e+00 1157.9 676 91.1
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 1.6e-299 1032.3 675 80.4
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 2.1e-278 962.2 684 73.2
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 7.9e-270 933.7 682 72.1
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 1.1e-268 929.9 679 70.8
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 2.4e-266 922.2 680 71.2
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 3.1e-266 921.8 685 71.5
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 4.9e-264 914.4 684 70.8
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 3.3e-260 901.7 726 67.1
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 1.6e-259 899.4 677 70.5
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 1.8e-258 896.0 676 69.5
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 4.6e-254 881.3 680 69.4
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 6.7e-253 877.5 681 68.0
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 5.9e-249 864.4 683 67.1
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 1.3e-248 863.2 683 67.8
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 3.8e-248 861.7 685 67.2
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 8.5e-248 860.5 683 67.5
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 9.4e-247 857.1 686 65.0
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 2.1e-246 855.9 676 66.7
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 2.0e-244 849.4 687 65.5
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 4.4e-244 848.2 676 66.6
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 4.4e-244 848.2 676 66.3
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 2.4e-242 842.4 680 65.3
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 9.1e-242 840.5 676 65.7
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 1.2e-241 840.1 685 65.8
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 6.5e-240 834.3 668 65.7
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 3.2e-239 832.0 673 65.7
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 2.7e-238 828.9 705 64.0
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 1.8e-237 826.2 672 66.5
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 3.0e-237 825.5 676 64.8
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 5.2e-237 824.7 676 64.3
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 2.6e-236 822.4 683 64.4
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 4.4e-236 821.6 687 65.1
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 4.4e-236 821.6 676 64.9
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 9.1e-234 813.9 674 63.5
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 1.0e-232 810.4 704 62.9
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 1.3e-232 810.1 673 64.3
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 6.5e-232 807.7 681 63.0
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 4.2e-231 805.1 672 64.3
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 9.4e-231 803.9 688 62.6
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 1.2e-230 803.5 687 63.5
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 8.0e-230 800.8 682 63.3
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 1.8e-229 799.7 681 62.6
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 2.3e-229 799.3 684 63.5
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 3.0e-229 798.9 684 63.5
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 2.6e-228 795.8 674 63.1
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 5.7e-228 794.7 674 63.4
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 1.3e-227 793.5 723 59.8
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 2.2e-227 792.7 594 70.0
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 7.5e-220 767.7 726 57.9
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 2.0e-217 759.6 677 60.3
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 5.9e-217 758.1 676 60.5
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 1.0e-213 747.3 662 60.1
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 2.0e-212 743.0 679 60.7
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 2.2e-211 739.6 682 60.1
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 8.3e-211 737.6 677 59.2
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 8.3e-211 737.6 632 62.2
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 2.7e-209 732.6 675 60.9
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 7.8e-209 731.1 682 60.0
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 2.3e-208 729.6 673 58.4
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 1.1e-207 727.2 601 63.7
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 1.9e-207 726.5 684 59.4
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 1.9e-207 726.5 684 59.4
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 3.6e-206 722.2 679 58.3
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 4.0e-205 718.8 679 57.6
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 5.2e-205 718.4 597 64.0
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.2e-204 717.2 679 57.6
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 2.9e-203 712.6 681 58.6
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 6.4e-203 711.4 633 60.0
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 1.6e-201 706.8 683 58.4
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 2.7e-201 706.1 678 57.4
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 4.3e-199 698.7 675 57.8
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 5.6e-199 698.4 484 72.5
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 4.7e-198 695.3 673 57.2
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 4.0e-197 692.2 677 56.9
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 1.7e-195 686.8 678 57.7
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 2.2e-195 686.4 661 58.4
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 1.1e-194 684.1 604 62.4
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 1.3e-192 677.2 586 63.0
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 5.1e-192 675.2 675 56.7
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.4e-189 667.2 695 55.5
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 1.3e-187 660.6 618 57.8
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 1.2e-185 654.1 607 60.6
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 2.7e-185 652.9 678 55.0
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 1.2e-177 627.5 688 52.5
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.6e-177 627.1 680 53.1
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 1.5e-175 620.5 718 50.6
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 2.4e-173 613.2 673 51.6
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 2.2e-171 606.7 652 53.4
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 1.1e-157 561.2 600 53.3
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 8.2e-150 535.0 668 50.7
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 5.0e-139 499.2 603 48.6
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 7.2e-138 495.4 700 43.7
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 1.8e-125 454.1 474 51.5
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 3.2e-122 443.4 704 41.2
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.1e-117 428.3 302 68.9
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 1.0e-107 395.2 279 68.8
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 1.2e-105 388.3 357 56.0
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.0e-67 262.3 311 51.1
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 6.2e-65 253.1 217 60.4
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.3e-38 165.6 87 86.2
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.9e-38 163.7 87 86.2
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.9e-36 156.4 87 81.6
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.9e-35 154.1 83 83.1
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 4.8e-33 147.1 456 30.5
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.4e-26 123.2 68 80.9
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 2.2e-25 121.7 68 82.4
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 1.1e-24 119.4 198 43.9
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.6e-12 79.0 46 80.4
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 6.1e-12 77.0 180 35.0
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 1.8e-11 75.5 334 24.0
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 6.7e-11 73.6 68 54.4
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.8e-09 67.4 66 53.0
SHI06084 Sapria himalayana HOM05D006884 ORTHO05D008604 1.0e-06 59.7 59 61.0


User provided reference genes

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