Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 7.2e-21 102.8 47 100.0
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 5.3e-16 86.7 41 92.7
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 7.0e-16 86.3 41 90.2
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 7.0e-16 86.3 41 92.7
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 7.0e-16 86.3 41 90.2
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 1.6e-15 85.1 41 90.2
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 1.6e-15 85.1 41 87.8
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.6e-15 85.1 41 90.2
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 2.0e-15 84.7 41 90.2
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 2.0e-15 84.7 41 90.2
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.0e-15 84.7 41 90.2
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 2.0e-15 84.7 41 90.2
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.0e-15 84.7 41 90.2
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 2.0e-15 84.7 41 90.2
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 2.6e-15 84.3 41 87.8
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 2.6e-15 84.3 41 90.2
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 2.6e-15 84.3 41 90.2
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 2.6e-15 84.3 41 87.8
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.6e-15 84.3 41 87.8
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 2.6e-15 84.3 41 87.8
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 3.5e-15 84.0 41 87.8
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 3.5e-15 84.0 41 85.4
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 4.5e-15 83.6 41 87.8
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 4.5e-15 83.6 41 87.8
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 4.5e-15 83.6 41 85.4
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 5.9e-15 83.2 41 85.4
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 5.9e-15 83.2 41 87.8
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 5.9e-15 83.2 41 85.4
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 5.9e-15 83.2 41 87.8
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 5.9e-15 83.2 41 87.8
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 5.9e-15 83.2 41 85.4
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 7.7e-15 82.8 41 85.4
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 7.7e-15 82.8 41 85.4
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 7.7e-15 82.8 41 87.8
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 7.7e-15 82.8 41 85.4
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 7.7e-15 82.8 41 85.4
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 1.0e-14 82.4 41 87.8
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 1.0e-14 82.4 39 92.3
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 1.3e-14 82.0 43 83.7
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 1.3e-14 82.0 41 87.8
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 1.3e-14 82.0 41 85.4
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 1.3e-14 82.0 41 85.4
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 1.7e-14 81.6 41 85.4
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 1.7e-14 81.6 41 87.8
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 1.7e-14 81.6 41 82.9
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 1.7e-14 81.6 41 87.8
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.7e-14 81.6 41 85.4
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 2.2e-14 81.3 41 80.5
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 2.2e-14 81.3 41 85.4
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 2.2e-14 81.3 41 85.4
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 2.2e-14 81.3 39 89.7
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 2.2e-14 81.3 41 85.4
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 2.9e-14 80.9 42 88.1
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 2.9e-14 80.9 41 85.4
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 2.9e-14 80.9 41 85.4
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 2.9e-14 80.9 41 82.9
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 3.8e-14 80.5 41 85.4
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 3.8e-14 80.5 41 87.8
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 5.0e-14 80.1 41 85.4
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 5.0e-14 80.1 41 85.4
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 5.0e-14 80.1 41 82.9
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 5.0e-14 80.1 41 82.9
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 6.5e-14 79.7 41 82.9
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 8.5e-14 79.3 41 80.5
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 8.5e-14 79.3 41 82.9
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 1.1e-13 79.0 41 82.9
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 1.5e-13 78.6 41 82.9
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 1.9e-13 78.2 41 80.5
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 1.9e-13 78.2 41 82.9
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 1.9e-13 78.2 41 82.9
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 1.9e-13 78.2 41 82.9
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 1.9e-13 78.2 41 82.9
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 1.9e-13 78.2 41 82.9
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 1.9e-13 78.2 41 82.9
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.5e-13 77.8 41 80.5
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 2.5e-13 77.8 41 82.9
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 4.2e-13 77.0 41 78.0
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 5.5e-13 76.6 41 78.0
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 5.5e-13 76.6 41 78.0
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 5.5e-13 76.6 41 82.9
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 7.2e-13 76.3 42 83.3
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 7.2e-13 76.3 41 80.5
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 7.2e-13 76.3 41 80.5
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 7.2e-13 76.3 41 80.5
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 7.2e-13 76.3 41 78.0
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 1.2e-12 75.5 41 75.6
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.2e-12 75.5 41 78.0
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 1.6e-12 75.1 41 78.0
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 1.6e-12 75.1 41 80.5
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 2.1e-12 74.7 41 80.5
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 2.1e-12 74.7 41 80.5
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 2.1e-12 74.7 41 78.0
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 3.6e-12 73.9 41 75.6
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 6.1e-12 73.2 41 78.0
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 8.0e-12 72.8 41 78.0
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 8.0e-12 72.8 41 73.2
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.0e-11 72.4 41 73.2
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 1.4e-11 72.0 41 73.2
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.4e-11 72.0 41 73.2
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 1.8e-11 71.6 41 73.2
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 4.0e-11 70.5 41 73.2
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 4.0e-11 70.5 37 81.1
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 8.8e-11 69.3 37 81.1
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-10 67.8 41 68.3
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 4.4e-10 67.0 41 68.3
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 1.3e-09 65.5 42 69.0
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 4.8e-09 63.5 41 63.4
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 1.4e-08 62.0 37 73.0
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.4e-08 62.0 41 63.4
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 4.1e-08 60.5 63 52.4
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 9.1e-08 59.3 44 65.9
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 7.7e-07 56.2 28 85.7
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.0e-06 55.8 28 75.0
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 1.7e-06 55.1 26 84.6
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 8.5e-06 52.8 26 84.6
Lj4A830T39 Lonicera japonica HOM05D005440 ORTHO05D234985 8.5e-06 52.8 25 88.0


User provided reference genes

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