Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0058341 Rosa chinensis HOM05D006457 ORTHO05D008275 2.5e-28 127.9 57 100.0
Ca_09820_v3 Cicer arietinum L. HOM05D006457 ORTHO05D008275 1.5e-12 75.5 36 86.1
arahy.Tifrunner.gnm1.ann1.AG4MDC Arachis hypogaea HOM05D006457 ORTHO05D008275 7.4e-12 73.2 34 91.2
arahy.Tifrunner.gnm1.ann1.YH23E2 Arachis hypogaea HOM05D006457 ORTHO05D008275 7.4e-12 73.2 34 91.2
Lalb_Chr02g0150531 Lupinus albus HOM05D006457 ORTHO05D008275 7.4e-12 73.2 34 91.2
Sabra08G0126300 Salix brachista HOM05D006457 ORTHO05D008275 9.7e-12 72.8 35 88.6
Ah.04g156060 Amaranthus hybridus HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
EL10Ac3g05029 Beta vulgaris HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
CANSAT78G2507 Cannabis sativa HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
Dinv27040 Davidia involucrata HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
Dinv29877 Davidia involucrata HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
ECA233G3697 Erigeron canadensis HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
FvH4_4g03430 Fragaria vesca HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
FAN12G4283 Fragaria x ananassa HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
FAN17G1464 Fragaria x ananassa HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
FAN22G0441 Fragaria x ananassa HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
HanXRQChr05g0134481 Helianthus annuus HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
Hma1.2p1_0267F.1_g107350 Hydrangea macrophylla HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
Hma1.2p1_0267F.1_g107360 Hydrangea macrophylla HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
Lsat_1_v5_gn_5_72441 Lactuca sativa HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
MD13G1212500 Malus domestica HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
Medtr1g074170 Medicago truncatula HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
Nn1g02723 Nelumbo nucifera HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
Os04g0182800 Oryza sativa ssp. japonica HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
Phvul.007G128300 Phaseolus vulgaris HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
Prupe.1G037500 Prunus persica HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
RcHm_v2.0_Chr4g0392411 Rosa chinensis HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
VMungo0720G2635 Vigna mungo HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
GSVIVG01027767001 Vitis vinifera HOM05D006457 ORTHO05D008275 1.3e-11 72.4 34 91.2
DCAR_027307 Daucus carota HOM05D006457 ORTHO05D008275 1.7e-11 72.0 34 91.2
Glyma.10G187300 Glycine max HOM05D006457 ORTHO05D008275 1.7e-11 72.0 34 88.2
Glyma.20G203200 Glycine max HOM05D006457 ORTHO05D008275 1.7e-11 72.0 34 88.2
Sc19g0003600 Simmondsia chinensis HOM05D006457 ORTHO05D008275 1.7e-11 72.0 34 91.2
TPR.G26440 Trifolium pratense HOM05D006457 ORTHO05D008275 1.7e-11 72.0 34 88.2
vmacro15431 Vaccinium macrocarpon HOM05D006457 ORTHO05D008275 1.7e-11 72.0 34 91.2
CDE05G1545 Ceratophyllum demersum HOM05D006457 ORTHO05D008275 2.2e-11 71.6 38 81.6
MELO3C006434.2 Cucumis melo HOM05D006457 ORTHO05D008275 2.2e-11 71.6 34 88.2
CsaV3_3G012200 Cucumis sativus L. HOM05D006457 ORTHO05D008275 2.2e-11 71.6 34 88.2
Sed0004292 Sechium edule HOM05D006457 ORTHO05D008275 2.2e-11 71.6 34 88.2
Hund03034 Selenicereus undatus HOM05D006457 ORTHO05D008275 2.2e-11 71.6 34 88.2
CSS0034990 Camellia sinensis var. sinensis HOM05D006457 ORTHO05D008275 2.8e-11 71.2 34 88.2
ClCG05G004380 Citrullus lanatus HOM05D006457 ORTHO05D008275 2.8e-11 71.2 34 85.3
Lj5g0021789 Lotus japonicus HOM05D006457 ORTHO05D008275 3.7e-11 70.9 34 88.2
MBI18_g15334_MAGBIO Magnolia biondii HOM05D006457 ORTHO05D008275 3.7e-11 70.9 34 88.2
Potri.008G165800 Populus trichocarpa HOM05D006457 ORTHO05D008275 3.7e-11 70.9 34 88.2
Rhsim02G0036100 Rhododendron simsii HOM05D006457 ORTHO05D008275 3.7e-11 70.9 34 88.2
Psat6g128760 Pisum sativum HOM05D006457 ORTHO05D008275 4.8e-11 70.5 34 88.2
Aqoxy5G00253 Aquilegia oxysepala HOM05D006457 ORTHO05D008275 6.3e-11 70.1 34 88.2
MSTRG.9902 Avicennia marina HOM05D006457 ORTHO05D008275 6.3e-11 70.1 34 85.3
Cfa008326 Carpinus fangiana HOM05D006457 ORTHO05D008275 6.3e-11 70.1 34 88.2
CiPaw.02G113800 Carya illinoinensis HOM05D006457 ORTHO05D008275 6.3e-11 70.1 34 88.2
AUR62002111 Chenopodium quinoa HOM05D006457 ORTHO05D008275 6.3e-11 70.1 34 88.2
AUR62028231 Chenopodium quinoa HOM05D006457 ORTHO05D008275 6.3e-11 70.1 34 88.2
Haze_11345 Corylus avellana HOM05D006457 ORTHO05D008275 6.3e-11 70.1 34 88.2
Nn3g19624 Nelumbo nucifera HOM05D006457 ORTHO05D008275 6.3e-11 70.1 34 88.2
QL06p016992 Quercus lobata HOM05D006457 ORTHO05D008275 6.3e-11 70.1 34 88.2
HPP92_025980 Vanilla planifolia HOM05D006457 ORTHO05D008275 6.3e-11 70.1 34 88.2
Zm00001eb419600 Zea mays HOM05D006457 ORTHO05D008275 6.3e-11 70.1 34 88.2
Duzib212G0218 Durio zibethinus HOM05D006457 ORTHO05D008275 8.2e-11 69.7 34 85.3
Lj6A662T59 Lonicera japonica HOM05D006457 ORTHO05D008275 8.2e-11 69.7 34 88.2
Manes.03G165500 Manihot esculenta HOM05D006457 ORTHO05D008275 8.2e-11 69.7 34 85.3
Thecc.04G253200 Theobroma cacao HOM05D006457 ORTHO05D008275 8.2e-11 69.7 34 85.3
ATR0680G075 Amborella trichopoda HOM05D006457 ORTHO05D008275 1.1e-10 69.3 34 85.3
Cc03_g05380 Coffea canephora HOM05D006457 ORTHO05D008275 1.4e-10 68.9 34 82.4
PGR031G3937 Punica granatum HOM05D006457 ORTHO05D008275 1.4e-10 68.9 34 85.3
Cpa.g.sc44.77 Carica papaya HOM05D006457 ORTHO05D008275 1.8e-10 68.6 34 85.3
Ciclev10005707m.g Citrus clementina HOM05D006457 ORTHO05D008275 2.4e-10 68.2 34 85.3
Eucgr.H00173 Eucalyptus grandis HOM05D006457 ORTHO05D008275 2.4e-10 68.2 34 85.3
MD16G1216100 Malus domestica HOM05D006457 ORTHO05D008275 2.4e-10 68.2 34 85.3
Actinidia39894 Actinidia chinensis HOM05D006457 ORTHO05D008275 4.1e-10 67.4 34 85.3
Gohir.A09G058300 Gossypium hirsutum HOM05D006457 ORTHO05D008275 4.1e-10 67.4 34 82.4
Gohir.D09G057800 Gossypium hirsutum HOM05D006457 ORTHO05D008275 4.1e-10 67.4 34 82.4
Gorai.006G072000 Gossypium raimondii HOM05D006457 ORTHO05D008275 4.1e-10 67.4 34 82.4
THA.LOC104801088 Tarenaya hassleriana HOM05D006457 ORTHO05D008275 4.1e-10 67.4 34 85.3
unitig_748.g7323 Utricularia gibba HOM05D006457 ORTHO05D008275 4.1e-10 67.4 34 79.4
Atru.chr4.2091 Acer truncatum HOM05D006457 ORTHO05D008275 5.3e-10 67.0 34 82.4
Migut.N00260 Erythranthe guttata HOM05D006457 ORTHO05D008275 5.3e-10 67.0 34 82.4
Pp3c16_12620 Physcomitrium patens HOM05D006457 ORTHO05D008275 5.3e-10 67.0 34 82.4
SMO145G0254 Selaginella moellendorffii HOM05D006457 ORTHO05D008275 5.3e-10 67.0 34 82.4
TAR636G2559 Trochodendron aralioides HOM05D006457 ORTHO05D008275 5.3e-10 67.0 34 85.3
Cre12.g554953 Chlamydomonas reinhardtii HOM05D006457 ORTHO05D008275 1.2e-09 65.9 34 79.4
Aa31LG5G3680 Aethionema arabicum HOM05D006457 ORTHO05D008275 2.0e-09 65.1 34 79.4
AL8G16870 Arabidopsis lyrata HOM05D006457 ORTHO05D008275 2.6e-09 64.7 34 79.4
AT5G43430 Arabidopsis thaliana HOM05D006457 ORTHO05D008275 2.6e-09 64.7 34 79.4
BcaB07g31008 Brassica carinata HOM05D006457 ORTHO05D008275 2.6e-09 64.7 34 79.4
BcaC04g21915 Brassica carinata HOM05D006457 ORTHO05D008275 2.6e-09 64.7 34 79.4
A09p20470 Brassica napus HOM05D006457 ORTHO05D008275 2.6e-09 64.7 34 79.4
C09p25850 Brassica napus HOM05D006457 ORTHO05D008275 2.6e-09 64.7 34 79.4
BolC9t55493H Brassica oleracea HOM05D006457 ORTHO05D008275 2.6e-09 64.7 34 79.4
Carub.0008s0516 Capsella rubella HOM05D006457 ORTHO05D008275 2.6e-09 64.7 34 79.4
CARHR180150 Cardamine hirsuta HOM05D006457 ORTHO05D008275 2.6e-09 64.7 34 79.4
Thhalv10003253m.g Eutrema salsugineum HOM05D006457 ORTHO05D008275 2.6e-09 64.7 34 79.4
SHI00666 Sapria himalayana HOM05D006457 ORTHO05D008275 2.6e-09 64.7 34 79.4
Sp2g08310 Schrenkiella parvula HOM05D006457 ORTHO05D008275 2.6e-09 64.7 34 79.4
SEGI_23974 Sequoiadendron giganteum HOM05D006457 ORTHO05D008275 2.6e-09 64.7 34 82.4
PSO210G6447 Papaver somniferum HOM05D006457 ORTHO05D008275 3.4e-09 64.3 38 78.9
PSO832G2062 Papaver somniferum HOM05D006457 ORTHO05D008275 3.4e-09 64.3 38 78.9
Mapoly0061s0138 Marchantia polymorpha HOM05D006457 ORTHO05D008275 7.7e-09 63.2 34 79.4
Nitab4.5_0000342g0030 Nicotiana tabacum HOM05D006457 ORTHO05D008275 1.0e-08 62.8 34 79.4
Nitab4.5_0003897g0020 Nicotiana tabacum HOM05D006457 ORTHO05D008275 1.0e-08 62.8 34 79.4
CAN.G793.35 Capsicum annuum HOM05D006457 ORTHO05D008275 1.7e-08 62.0 34 79.4
Peaxi162Scf00024g02411 Petunia axillaris HOM05D006457 ORTHO05D008275 1.7e-08 62.0 34 79.4
Solyc09g089880.3 Solanum lycopersicum HOM05D006457 ORTHO05D008275 1.7e-08 62.0 34 79.4
Sopen09g032820 Solanum pennellii HOM05D006457 ORTHO05D008275 1.7e-08 62.0 34 79.4
PGSC0003DMG400017180 Solanum tuberosum HOM05D006457 ORTHO05D008275 1.7e-08 62.0 34 79.4
THA.LOC104826077 Tarenaya hassleriana HOM05D006457 ORTHO05D008275 2.2e-08 61.6 38 76.3
Haze_27028 Corylus avellana HOM05D006457 ORTHO05D008275 2.9e-08 61.2 34 79.4
SalBow3G1824 Salvia bowleyana HOM05D006457 ORTHO05D008275 2.9e-08 61.2 28 89.3
SGA_v2.0_scaffold67G22771 Striga asiatica HOM05D006457 ORTHO05D008275 8.5e-08 59.7 33 72.7
Oeu063893.1 Olea europaea HOM05D006457 ORTHO05D000397 3.2e-07 57.8 27 88.9
BraA09t37652Z Brassica rapa HOM05D006457 ORTHO05D008275 7.2e-07 56.6 44 61.4
Cfa021602 Carpinus fangiana HOM05D006457 ORTHO05D008275 4.7e-06 53.9 34 64.7


User provided reference genes

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