Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 4.6e-92 341.3 178 100.0
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 4.0e-80 301.6 159 98.1
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 6.8e-80 300.8 159 98.1
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 2.6e-79 298.9 159 97.5
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 1.0e-51 207.2 168 66.1
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 2.9e-46 189.1 157 63.7
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 4.9e-38 161.8 167 55.1
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 1.5e-34 150.2 164 52.4
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 8.2e-33 144.4 162 54.3
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 8.2e-33 144.4 162 52.5
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 5.9e-31 138.3 163 52.1
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 2.2e-30 136.3 157 47.8
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 2.9e-30 136.0 162 50.6
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 3.8e-30 135.6 166 50.6
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.1e-29 134.0 163 49.7
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 1.1e-29 134.0 166 50.0
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 2.5e-29 132.9 162 51.2
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 9.3e-29 131.0 157 52.2
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.6e-28 130.2 162 51.2
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 2.3e-27 126.3 163 43.6
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 6.7e-27 124.8 162 45.7
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 8.8e-27 124.4 161 46.6
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 1.3e-25 120.6 164 46.3
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 7.7e-23 111.3 119 49.6
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 7.7e-23 111.3 119 49.6
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.3e-22 110.5 157 45.9
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 5.5e-21 105.1 156 39.1
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 9.4e-21 104.4 159 41.5
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 6.1e-20 101.7 160 39.4
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 3.0e-19 99.4 119 43.7
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 3.0e-19 99.4 160 38.8
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 5.1e-19 98.6 154 39.0
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 5.1e-19 98.6 160 39.4
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 2.0e-18 96.7 165 41.2
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 4.4e-18 95.5 162 40.7
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 5.7e-18 95.1 176 36.9
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 1.7e-17 93.6 158 38.6
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 1.7e-17 93.6 136 41.2
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.7e-17 93.6 176 36.4
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 2.8e-17 92.8 158 42.4
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 4.8e-17 92.0 169 35.5
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 6.3e-17 91.7 158 37.3
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 2.4e-16 89.7 129 43.4
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 3.1e-16 89.4 171 35.1
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 3.1e-16 89.4 171 34.5
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 5.3e-16 88.6 165 38.8
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 9.1e-16 87.8 166 39.2
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 9.1e-16 87.8 159 35.8
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 1.2e-15 87.4 163 33.7
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 1.2e-15 87.4 113 42.5
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 1.5e-15 87.0 152 35.5
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 2.0e-15 86.7 183 33.9
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 2.6e-15 86.3 157 33.8
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 2.6e-15 86.3 165 38.8
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 3.4e-15 85.9 125 41.6
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 5.9e-15 85.1 158 39.2
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 7.7e-15 84.7 173 34.1
Gohir.D05G106066 Gossypium hirsutum HOM05D004255 ORTHO05D004815 7.7e-15 84.7 129 45.7
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.3e-14 84.0 168 33.9
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 2.2e-14 83.2 160 36.2
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 2.2e-14 83.2 114 41.2
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.9e-14 82.8 159 35.2
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 2.9e-14 82.8 117 42.7
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 8.5e-14 81.3 160 37.5
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.1e-13 80.9 107 41.1
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.5e-13 79.7 153 34.0
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 3.2e-13 79.3 112 38.4
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 1.2e-12 77.4 140 32.9
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 1.6e-12 77.0 165 36.4
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 2.7e-12 76.3 102 39.2
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 2.7e-12 76.3 134 36.6
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.7e-12 76.3 134 36.6
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 3.6e-12 75.9 114 43.9
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 3.6e-12 75.9 152 33.6
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 4.7e-12 75.5 110 37.3
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 4.7e-12 75.5 157 32.5
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 6.1e-12 75.1 129 36.4
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 8.0e-12 74.7 113 40.7
BraA07t29569Z Brassica rapa HOM05D004255 ORTHO05D004815 8.0e-12 74.7 162 37.7
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 8.0e-12 74.7 125 36.0
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 1.4e-11 73.9 172 30.2
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.8e-11 73.6 109 36.7
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 2.3e-11 73.2 107 41.1
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 3.0e-11 72.8 111 36.9
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 5.2e-11 72.0 132 33.3
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 5.2e-11 72.0 131 38.9
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 8.8e-11 71.2 134 39.6
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 8.8e-11 71.2 114 37.7
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 1.1e-10 70.9 138 36.2
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.1e-10 70.9 134 38.8
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.1e-10 70.9 134 38.8
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 1.5e-10 70.5 129 34.1
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 2.0e-10 70.1 131 32.1
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 2.0e-10 70.1 148 37.2
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 3.3e-10 69.3 89 41.6
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 5.7e-10 68.6 159 32.7
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 7.4e-10 68.2 110 36.4
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 2.2e-09 66.6 75 46.7
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 2.8e-09 66.2 165 34.5
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 6.3e-09 65.1 169 29.6
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 8.2e-09 64.7 133 35.3
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 8.2e-09 64.7 133 35.3
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 1.1e-08 64.3 125 39.2
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 1.4e-08 63.9 111 41.4
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 1.8e-08 63.5 110 41.8
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 2.4e-08 63.2 125 38.4
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 1.2e-07 60.8 119 34.5
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 2.0e-07 60.1 124 29.8
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 5.9e-07 58.5 112 30.4
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 5.0e-06 55.5 116 32.8
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 6.5e-06 55.1 64 42.2


User provided reference genes

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