Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0057571 Rosa chinensis HOM05D004827 ORTHO05D005395 4.5e-79 297.7 140 100.0
RcHm_v2.0_Chr5g0057511 Rosa chinensis HOM05D004827 ORTHO05D005395 2.6e-74 282.0 134 97.8
FvH4_3g30960 Fragaria vesca HOM05D004827 ORTHO05D005395 2.0e-71 272.3 134 94.0
FAN21G3549 Fragaria x ananassa HOM05D004827 ORTHO05D005395 7.8e-71 270.4 134 93.3
FAN25G1724 Fragaria x ananassa HOM05D004827 ORTHO05D005395 7.8e-71 270.4 134 94.0
FAN16G1413 Fragaria x ananassa HOM05D004827 ORTHO05D005395 2.3e-70 268.9 134 92.5
Prupe.6G109100 Prunus persica HOM05D004827 ORTHO05D005395 6.2e-68 260.8 134 88.8
MD11G1146100 Malus domestica HOM05D004827 ORTHO05D005395 3.1e-67 258.5 134 89.6
CANSAT78G0379 Cannabis sativa HOM05D004827 ORTHO05D005395 4.0e-67 258.1 133 89.5
Haze_23732 Corylus avellana HOM05D004827 ORTHO05D005395 5.2e-67 257.7 134 88.8
PGR102G0165 Punica granatum HOM05D004827 ORTHO05D005395 5.2e-67 257.7 134 88.8
Sc15g0001580 Simmondsia chinensis HOM05D004827 ORTHO05D005395 6.8e-67 257.3 134 88.8
MD00G1032700 Malus domestica HOM05D004827 ORTHO05D005395 9.8e-66 253.4 134 88.8
Sed0007609 Sechium edule HOM05D004827 ORTHO05D005395 9.8e-66 253.4 134 85.8
TWI38G0398 Tripterygium wilfordii HOM05D004827 ORTHO05D005395 9.8e-66 253.4 134 85.1
CsaV3_1G013530 Cucumis sativus L. HOM05D004827 ORTHO05D005395 1.7e-65 252.7 134 86.6
Nn6g35282 Nelumbo nucifera HOM05D004827 ORTHO05D005395 1.7e-65 252.7 134 86.6
Hund01469 Selenicereus undatus HOM05D004827 ORTHO05D005395 1.7e-65 252.7 134 85.8
Ah.01g003210 Amaranthus hybridus HOM05D004827 ORTHO05D005395 2.2e-65 252.3 134 86.6
MELO3C004950.2 Cucumis melo HOM05D004827 ORTHO05D005395 3.7e-65 251.5 134 86.6
Dinv34726 Davidia involucrata HOM05D004827 ORTHO05D005395 8.3e-65 250.4 134 85.8
Phvul.011G084400 Phaseolus vulgaris HOM05D004827 ORTHO05D005395 8.3e-65 250.4 134 85.8
Actinidia24133 Actinidia chinensis HOM05D004827 ORTHO05D005395 1.4e-64 249.6 134 84.3
CSS0005897 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 1.9e-64 249.2 134 85.1
TAR633G0460 Trochodendron aralioides HOM05D004827 ORTHO05D005395 1.9e-64 249.2 134 83.6
CiPaw.13G119600 Carya illinoinensis HOM05D004827 ORTHO05D005395 2.4e-64 248.8 134 85.8
Manes.04G014900 Manihot esculenta HOM05D004827 ORTHO05D005395 2.4e-64 248.8 135 83.0
TPR.G6148 Trifolium pratense HOM05D004827 ORTHO05D005395 3.2e-64 248.4 134 84.3
QL01p015669 Quercus lobata HOM05D004827 ORTHO05D005395 4.1e-64 248.1 130 86.2
Glyma.12G079700 Glycine max HOM05D004827 ORTHO05D005395 5.4e-64 247.7 129 85.3
GSVIVG01031499001 Vitis vinifera HOM05D004827 ORTHO05D005395 5.4e-64 247.7 134 84.3
Glyma.11G194300 Glycine max HOM05D004827 ORTHO05D005395 9.2e-64 246.9 134 82.1
Psat0s3927g0040 Pisum sativum HOM05D004827 ORTHO05D005395 9.2e-64 246.9 133 83.5
Cpa.g.sc65.38 Carica papaya HOM05D004827 ORTHO05D005395 2.0e-63 245.7 134 82.8
COL.COLO4_11061 Corchorus olitorius HOM05D004827 ORTHO05D005395 2.0e-63 245.7 130 84.6
Lalb_Chr03g0027631 Lupinus albus HOM05D004827 ORTHO05D005395 2.0e-63 245.7 131 84.0
Thecc.09G349000 Theobroma cacao HOM05D004827 ORTHO05D005395 2.0e-63 245.7 131 82.4
Os05g0295800 Oryza sativa ssp. japonica HOM05D004827 ORTHO05D005395 3.5e-63 245.0 134 83.6
PSO339G5318 Papaver somniferum HOM05D004827 ORTHO05D005395 3.5e-63 245.0 134 82.8
Sabra09G0004200 Salix brachista HOM05D004827 ORTHO05D005395 3.5e-63 245.0 134 85.1
EL10Ac9g22587 Beta vulgaris HOM05D004827 ORTHO05D005395 4.6e-63 244.6 134 83.6
Potri.009G007200 Populus trichocarpa HOM05D004827 ORTHO05D005395 6.0e-63 244.2 134 85.1
Rhsim13G0099200 Rhododendron simsii HOM05D004827 ORTHO05D005395 6.0e-63 244.2 134 83.6
Medtr4g057685 Medicago truncatula HOM05D004827 ORTHO05D005395 7.8e-63 243.8 134 82.8
HPP92_002620 Vanilla planifolia HOM05D004827 ORTHO05D005395 1.0e-62 243.4 134 82.8
arahy.Tifrunner.gnm1.ann1.PTJZ35 Arachis hypogaea HOM05D004827 ORTHO05D005395 1.7e-62 242.7 139 82.7
PSO063G0803 Papaver somniferum HOM05D004827 ORTHO05D005395 3.0e-62 241.9 134 82.1
HPP92_002675 Vanilla planifolia HOM05D004827 ORTHO05D005395 3.9e-62 241.5 134 82.1
Ciclev10029169m.g Citrus clementina HOM05D004827 ORTHO05D005395 5.0e-62 241.1 128 84.4
Ca_19305_v3 Cicer arietinum L. HOM05D004827 ORTHO05D005395 6.6e-62 240.7 127 84.3
THA.LOC104800584 Tarenaya hassleriana HOM05D004827 ORTHO05D005395 6.6e-62 240.7 134 80.6
Cc01_g10500 Coffea canephora HOM05D004827 ORTHO05D005395 8.6e-62 240.4 134 80.6
Sp1g06750 Schrenkiella parvula HOM05D004827 ORTHO05D005395 8.6e-62 240.4 134 80.6
Atru.chr3.3541 Acer truncatum HOM05D004827 ORTHO05D005395 1.1e-61 240.0 129 84.5
Lj3g0013572 Lotus japonicus HOM05D004827 ORTHO05D005395 1.1e-61 240.0 129 82.9
VMungo1127G2270 Vigna mungo HOM05D004827 ORTHO05D005395 1.1e-61 240.0 131 83.2
AT1G08110 Arabidopsis thaliana HOM05D004827 ORTHO05D005395 1.5e-61 239.6 134 80.6
AUR62014938 Chenopodium quinoa HOM05D004827 ORTHO05D005395 1.5e-61 239.6 125 86.4
THA.LOC104808316 Tarenaya hassleriana HOM05D004827 ORTHO05D005395 1.5e-61 239.6 127 84.3
Aa31sc241G20 Aethionema arabicum HOM05D004827 ORTHO05D005395 4.3e-61 238.0 134 79.1
vmacro03268 Vaccinium macrocarpon HOM05D004827 ORTHO05D005395 4.3e-61 238.0 134 81.3
AL1G18470 Arabidopsis lyrata HOM05D004827 ORTHO05D005395 5.6e-61 237.7 134 79.9
Carub.0001s0746 Capsella rubella HOM05D004827 ORTHO05D005395 7.3e-61 237.3 134 79.9
AUR62029203 Chenopodium quinoa HOM05D004827 ORTHO05D005395 7.3e-61 237.3 125 84.8
C05p06230 Brassica napus HOM05D004827 ORTHO05D005395 1.2e-60 236.5 134 79.9
BolC5t29377H Brassica oleracea HOM05D004827 ORTHO05D005395 1.2e-60 236.5 134 79.9
ClCG03G002770 Citrullus lanatus HOM05D004827 ORTHO05D005395 1.6e-60 236.1 165 70.3
SEGI_26473 Sequoiadendron giganteum HOM05D004827 ORTHO05D005395 2.1e-60 235.7 134 77.6
Lsat_1_v5_gn_1_62721 Lactuca sativa HOM05D004827 ORTHO05D005395 2.8e-60 235.3 130 81.5
Aqoxy1G01146 Aquilegia oxysepala HOM05D004827 ORTHO05D005395 3.6e-60 235.0 134 81.3
BcaB07g34053 Brassica carinata HOM05D004827 ORTHO05D005395 3.6e-60 235.0 129 81.4
Thhalv10008645m.g Eutrema salsugineum HOM05D004827 ORTHO05D005395 3.6e-60 235.0 134 78.4
CSS0024800 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 4.7e-60 234.6 134 81.3
CARHR007920 Cardamine hirsuta HOM05D004827 ORTHO05D005395 4.7e-60 234.6 134 79.9
Duzib150G1276 Durio zibethinus HOM05D004827 ORTHO05D005395 4.7e-60 234.6 128 81.2
CDE06G2782 Ceratophyllum demersum HOM05D004827 ORTHO05D005395 1.1e-59 233.4 128 81.2
Gohir.A13G232600 Gossypium hirsutum HOM05D004827 ORTHO05D005395 1.4e-59 233.0 128 81.2
Gohir.D13G238300 Gossypium hirsutum HOM05D004827 ORTHO05D005395 1.4e-59 233.0 128 81.2
Gorai.013G269200 Gossypium raimondii HOM05D004827 ORTHO05D005395 1.4e-59 233.0 128 81.2
Nitab4.5_0004993g0010 Nicotiana tabacum HOM05D004827 ORTHO05D005395 2.3e-59 232.3 134 78.4
BraA06t23724Z Brassica rapa HOM05D004827 ORTHO05D005395 5.2e-59 231.1 139 77.0
MSTRG.17890 Avicennia marina HOM05D004827 ORTHO05D005395 6.8e-59 230.7 133 76.7
SalBow3G2012 Salvia bowleyana HOM05D004827 ORTHO05D005395 1.5e-58 229.6 133 76.7
MSTRG.21095 Avicennia marina HOM05D004827 ORTHO05D005395 2.0e-58 229.2 133 76.7
Sopen11g027750 Solanum pennellii HOM05D004827 ORTHO05D005395 2.0e-58 229.2 134 78.4
Nitab4.5_0001442g0020 Nicotiana tabacum HOM05D004827 ORTHO05D005395 3.4e-58 228.4 134 76.9
SGA_v2.0_scaffold263G45967 Striga asiatica HOM05D004827 ORTHO05D005395 3.4e-58 228.4 133 76.7
Solyc11g069040.3 Solanum lycopersicum HOM05D004827 ORTHO05D005395 4.4e-58 228.0 134 77.6
CAN.G546.14 Capsicum annuum HOM05D004827 ORTHO05D005395 7.5e-58 227.3 134 77.6
SMO353G0047 Selaginella moellendorffii HOM05D004827 ORTHO05D005395 7.5e-58 227.3 134 73.1
Ah.01g003220 Amaranthus hybridus HOM05D004827 ORTHO05D005395 1.3e-57 226.5 134 76.1
PGSC0003DMG400008074 Solanum tuberosum HOM05D004827 ORTHO05D005395 1.7e-57 226.1 133 77.4
Zm00001eb086540 Zea mays HOM05D004827 ORTHO05D005395 1.7e-57 226.1 131 79.4
Peaxi162Scf00682g00012 Petunia axillaris HOM05D004827 ORTHO05D005395 4.9e-57 224.6 125 79.2
HanXRQChr11g0346211 Helianthus annuus HOM05D004827 ORTHO05D005395 1.9e-56 222.6 132 74.2
A06p05180 Brassica napus HOM05D004827 ORTHO05D005395 4.1e-56 221.5 162 66.0
Duzib170G0342 Durio zibethinus HOM05D004827 ORTHO05D005395 7.1e-56 220.7 131 76.3
Glyma.11G194200 Glycine max HOM05D004827 ORTHO05D005395 2.1e-55 219.2 126 76.2
Migut.D02265 Erythranthe guttata HOM05D004827 ORTHO05D005395 2.7e-55 218.8 133 72.2
SGA_v2.0_scaffold116G32194 Striga asiatica HOM05D004827 ORTHO05D005395 2.7e-55 218.8 133 71.4
Mapoly0033s0083 Marchantia polymorpha HOM05D004827 ORTHO05D005395 1.0e-54 216.9 123 76.4
BcaB07g34056 Brassica carinata HOM05D004827 ORTHO05D005395 5.6e-53 211.1 128 75.8
CSS0040325 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 5.6e-53 211.1 134 75.4
FAN11G0101 Fragaria x ananassa HOM05D004827 ORTHO05D005395 1.2e-52 209.9 108 88.9
ECA248G1504 Erigeron canadensis HOM05D004827 ORTHO05D005395 2.1e-52 209.1 132 69.7
Lj2A1013G28 Lonicera japonica HOM05D004827 ORTHO05D005395 3.6e-52 208.4 176 58.5
Mapoly0033s0085 Marchantia polymorpha HOM05D004827 ORTHO05D005395 3.6e-52 208.4 123 75.6
HanXRQChr01g0019511 Helianthus annuus HOM05D004827 ORTHO05D005395 1.4e-51 206.5 132 69.7
Pp3c10_11200 Physcomitrium patens HOM05D004827 ORTHO05D005395 3.1e-51 205.3 133 68.4
C03p63280 Brassica napus HOM05D004827 ORTHO05D005395 3.4e-50 201.8 140 70.7
ECA248G0211 Erigeron canadensis HOM05D004827 ORTHO05D005395 3.4e-50 201.8 125 68.8
Oeu018368.2 Olea europaea HOM05D004827 ORTHO05D005395 5.8e-50 201.1 130 69.2
BolC3t18580H Brassica oleracea HOM05D004827 ORTHO05D005395 1.7e-49 199.5 140 70.0
BcaC01g02577 Brassica carinata HOM05D004827 ORTHO05D005395 2.9e-49 198.7 134 72.4
Pp3c14_6610 Physcomitrium patens HOM05D004827 ORTHO05D005395 6.4e-49 197.6 133 65.4
Cre04.g216100 Chlamydomonas reinhardtii HOM05D004827 ORTHO05D005395 1.1e-48 196.8 121 71.9
AUR62029205 Chenopodium quinoa HOM05D004827 ORTHO05D005395 1.9e-48 196.1 144 66.7
BcaC05g24729 Brassica carinata HOM05D004827 ORTHO05D005395 4.1e-48 194.9 134 70.9
Gohir.D03G138500 Gossypium hirsutum HOM05D004827 ORTHO05D005395 2.1e-47 192.6 128 67.2
Gorai.003G145200 Gossypium raimondii HOM05D004827 ORTHO05D005395 2.1e-47 192.6 128 67.2
ATR0219G018 Amborella trichopoda HOM05D004827 ORTHO05D005395 2.7e-47 192.2 101 86.1
Gohir.D03G138400 Gossypium hirsutum HOM05D004827 ORTHO05D005395 3.5e-47 191.8 128 67.2
Gorai.003G145100 Gossypium raimondii HOM05D004827 ORTHO05D005395 3.5e-47 191.8 128 67.2
Gohir.A03G030000 Gossypium hirsutum HOM05D004827 ORTHO05D005395 4.6e-47 191.4 128 67.2
Gohir.A03G030100 Gossypium hirsutum HOM05D004827 ORTHO05D005395 4.6e-47 191.4 128 67.2
arahy.Tifrunner.gnm1.ann1.4ZYX81 Arachis hypogaea HOM05D004827 ORTHO05D005395 7.8e-47 190.7 138 69.6
Gohir.A03G030200 Gossypium hirsutum HOM05D004827 ORTHO05D005395 1.0e-46 190.3 125 68.8
Gohir.D03G138300 Gossypium hirsutum HOM05D004827 ORTHO05D005395 1.0e-46 190.3 125 68.8
Gorai.003G145000 Gossypium raimondii HOM05D004827 ORTHO05D005395 1.0e-46 190.3 125 68.8
C07p01580 Brassica napus HOM05D004827 ORTHO05D005395 4.7e-44 181.4 142 65.5
SEGI_34492 Sequoiadendron giganteum HOM05D004827 ORTHO05D005395 8.9e-43 177.2 100 78.0
Oeu018480.1 Olea europaea HOM05D004827 ORTHO05D005395 9.3e-40 167.2 93 78.5
SGA_v2.0_scaffold180G39601 Striga asiatica HOM05D004827 ORTHO05D005395 7.8e-39 164.1 121 57.9
Cfa010307 Carpinus fangiana HOM05D004827 ORTHO05D005395 2.9e-33 145.6 72 91.7
Hma1.2p1_1647F.1_g295520 Hydrangea macrophylla HOM05D004827 ORTHO05D005395 9.3e-32 140.6 71 88.7
THA.LOC104817647 Tarenaya hassleriana HOM05D004827 ORTHO05D005395 7.9e-31 137.5 72 83.3
MBI12_g32344_MAGBIO Magnolia biondii HOM05D004827 ORTHO05D005395 1.0e-30 137.1 71 85.9
Gohir.D03G138550 Gossypium hirsutum HOM05D004827 ORTHO05D005395 2.5e-29 132.5 138 51.4
Gorai.003G145300 Gossypium raimondii HOM05D004827 ORTHO05D005395 4.3e-29 131.7 134 52.2
Cfa025448 Carpinus fangiana HOM05D004827 ORTHO05D005395 9.0e-27 124.0 130 46.9
Potri.004G214966 Populus trichocarpa HOM05D004827 ORTHO05D005395 2.1e-23 112.8 64 79.7
CBR_g8005 Chara braunii HOM05D004827 ORTHO05D005395 1.3e-22 110.2 108 48.1
PRCOL_00001503 Prasinoderma coloniale HOM05D004827 ORTHO05D005395 3.1e-19 99.0 125 44.8
MBI18_g02639_MAGBIO Magnolia biondii HOM05D004827 ORTHO05D005395 4.5e-18 95.1 53 75.5
unitig_736.g22404 Utricularia gibba HOM05D004827 ORTHO05D005395 4.2e-16 88.6 67 61.2
Pp3c1_34670 Physcomitrium patens HOM05D004827 ORTHO05D005395 1.5e-10 70.1 62 46.8
CSS0012572 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 1.3e-09 67.0 34 85.3
Eucgr.C00588 Eucalyptus grandis HOM05D001382 ORTHO05D001266 2.5e-08 62.8 126 34.1
Eucgr.L03428 Eucalyptus grandis HOM05D001382 ORTHO05D001266 3.2e-08 62.4 126 34.1
Glyma.05G228500 Glycine max HOM05D001382 ORTHO05D001266 4.2e-08 62.0 125 36.0
Glyma.08G035400 Glycine max HOM05D001382 ORTHO05D001266 4.2e-08 62.0 125 36.0
VMungo0251G2635 Vigna mungo HOM05D001382 ORTHO05D001266 7.2e-08 61.2 125 35.2
Solyc12g007310.3 Solanum lycopersicum HOM05D001382 ORTHO05D001266 1.6e-07 60.1 125 34.4
Gohir.A06G094000 Gossypium hirsutum HOM05D001382 ORTHO05D001266 3.6e-07 58.9 125 32.8
Sabra04G0146000 Salix brachista HOM05D004827 ORTHO05D005395 3.6e-07 58.9 95 38.9
Phvul.002G310700 Phaseolus vulgaris HOM05D001382 ORTHO05D001266 4.6e-07 58.5 125 33.6
Sabra11G0003800 Salix brachista HOM05D001382 ORTHO05D001266 7.9e-07 57.8 123 32.5
Prupe.4G019400 Prunus persica HOM05D001382 ORTHO05D001266 1.0e-06 57.4 123 34.1
MD05G1348100 Malus domestica HOM05D001382 ORTHO05D001266 2.3e-06 56.2 123 35.0
C07p01610 Brassica napus HOM05D004827 ORTHO05D005395 3.0e-06 55.8 33 72.7
Gohir.D06G093600 Gossypium hirsutum HOM05D001382 ORTHO05D001266 3.9e-06 55.5 125 34.4
CSS0029613 Camellia sinensis var. sinensis HOM05D001382 ORTHO05D001266 5.1e-06 55.1 143 31.5
CAN.G1014.2 Capsicum annuum HOM05D001382 ORTHO05D001266 5.1e-06 55.1 128 30.5
Nitab4.5_0002827g0100 Nicotiana tabacum HOM05D001382 ORTHO05D001266 5.1e-06 55.1 123 32.5
Nitab4.5_0007799g0080 Nicotiana tabacum HOM05D001382 ORTHO05D001266 5.1e-06 55.1 123 32.5
Solyc02g080630.4 Solanum lycopersicum HOM05D001382 ORTHO05D001266 6.7e-06 54.7 128 31.2
Sopen02g025340 Solanum pennellii HOM05D001382 ORTHO05D001266 6.7e-06 54.7 128 31.2
Peaxi162Scf00147g00614 Petunia axillaris HOM05D001382 ORTHO05D001266 8.7e-06 54.3 123 32.5


User provided reference genes

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