Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 2.3e-68 262.3 153 100.0
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 5.0e-55 218.0 152 86.8
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 3.0e-52 208.8 151 77.5
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 6.8e-52 207.6 152 80.9
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 8.8e-52 207.2 152 80.9
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.5e-51 206.5 152 83.6
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 5.7e-51 204.5 151 76.2
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 7.5e-51 204.1 152 80.3
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 3.7e-50 201.8 151 75.5
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 6.3e-50 201.1 152 79.6
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.1e-49 200.3 152 81.6
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 2.5e-46 189.1 130 80.0
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 6.1e-45 184.5 129 77.5
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 6.8e-44 181.0 147 77.6
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 2.6e-43 179.1 147 78.2
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 4.4e-43 178.3 157 72.0
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 1.7e-42 176.4 155 72.9
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 6.3e-42 174.5 158 69.6
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 1.6e-40 169.9 153 61.4
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 9.5e-38 160.6 157 62.4
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 9.5e-38 160.6 158 63.3
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 2.8e-37 159.1 160 62.5
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 5.2e-36 154.8 157 62.4
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 1.2e-35 153.7 162 63.6
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 2.6e-35 152.5 164 57.9
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 4.4e-35 151.8 162 64.2
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 7.5e-35 151.0 157 58.0
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 2.2e-34 149.4 163 59.5
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 2.2e-34 149.4 158 62.0
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 2.9e-34 149.1 159 59.7
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 3.7e-34 148.7 155 60.6
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 4.9e-34 148.3 155 63.9
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 1.1e-33 147.1 158 60.8
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 1.4e-33 146.7 157 61.8
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 4.1e-33 145.2 116 83.6
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 1.2e-32 143.7 159 62.3
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 3.5e-32 142.1 159 51.6
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 5.9e-32 141.4 169 54.4
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 1.3e-31 140.2 159 61.0
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 3.0e-31 139.0 157 59.9
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 8.6e-31 137.5 160 58.8
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.1e-30 137.1 154 59.1
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 1.9e-30 136.3 154 60.4
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 1.9e-30 136.3 161 57.1
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 2.5e-30 136.0 161 59.0
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 7.3e-30 134.4 158 60.8
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 9.5e-30 134.0 154 53.9
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 1.2e-29 133.7 156 59.6
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 6.2e-29 131.3 162 59.9
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 1.4e-28 130.2 152 59.9
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.8e-28 129.8 158 55.1
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 2.3e-28 129.4 155 54.8
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 4.0e-28 128.6 159 59.1
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.6e-27 125.9 169 52.7
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 3.4e-27 125.6 162 56.8
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 4.4e-27 125.2 120 58.3
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 5.8e-27 124.8 161 56.5
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 7.5e-27 124.4 162 55.6
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 7.5e-27 124.4 151 55.0
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.3e-26 123.6 157 54.8
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.3e-26 123.6 159 55.3
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 2.2e-26 122.9 156 56.4
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 2.9e-26 122.5 157 58.6
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 3.7e-26 122.1 155 56.8
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 1.1e-25 120.6 167 50.9
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 2.4e-25 119.4 156 56.4
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 3.2e-25 119.0 160 53.1
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 1.2e-24 117.1 155 53.5
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 1.2e-24 117.1 155 53.5
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 1.2e-24 117.1 155 53.5
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 1.2e-24 117.1 156 57.1
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 3.5e-24 115.5 121 57.0
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 4.6e-24 115.2 156 54.5
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 4.6e-24 115.2 151 56.3
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 6.0e-24 114.8 157 54.1
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 7.8e-24 114.4 160 53.8
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 1.0e-23 114.0 155 53.5
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 1.0e-23 114.0 155 53.5
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 1.3e-23 113.6 161 52.8
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 1.7e-23 113.2 161 57.1
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 2.3e-23 112.8 157 54.8
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 3.0e-23 112.5 155 53.5
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.0e-23 112.5 157 52.9
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 3.9e-23 112.1 157 52.9
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 5.0e-23 111.7 117 54.7
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 6.6e-23 111.3 159 55.3
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 6.6e-23 111.3 162 51.9
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 6.6e-23 111.3 157 51.6
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 1.5e-22 110.2 157 51.0
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 1.5e-22 110.2 155 53.5
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 2.5e-22 109.4 115 55.7
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 3.3e-22 109.0 120 51.7
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 4.3e-22 108.6 116 55.2
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 4.3e-22 108.6 151 53.0
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 5.6e-22 108.2 152 46.7
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 7.3e-22 107.8 117 53.0
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 7.3e-22 107.8 115 55.7
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 9.5e-22 107.5 158 52.5
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 1.2e-21 107.1 170 50.6
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.6e-21 106.7 115 54.8
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 2.1e-21 106.3 115 51.3
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 4.7e-21 105.1 118 52.5
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 4.7e-21 105.1 157 52.2
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 8.1e-21 104.4 118 51.7
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 8.1e-21 104.4 118 51.7
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 8.1e-21 104.4 118 51.7
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 1.4e-20 103.6 158 50.6
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.4e-20 103.6 109 54.1
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 6.8e-20 101.3 158 50.6
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 1.5e-19 100.1 123 53.7
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 2.2e-18 96.3 150 44.0
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.9e-18 95.9 155 51.0
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.9e-17 93.2 157 48.4
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.9e-17 93.2 116 57.8
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 7.1e-17 91.3 107 57.9
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 9.2e-17 90.9 107 57.9
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 1.2e-16 90.5 151 41.1
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 3.5e-16 89.0 135 42.2
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 1.7e-15 86.7 153 41.2
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 5.1e-15 85.1 94 53.2
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 8.6e-15 84.3 158 46.2
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 3.3e-14 82.4 153 45.8
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 8.1e-13 77.8 153 46.4
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 1.2e-11 73.9 65 58.5
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 7.6e-11 71.2 173 41.6
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.7e-10 70.1 106 41.5
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 8.4e-10 67.8 68 51.5
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.4e-09 66.2 117 50.4
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 7.1e-09 64.7 105 53.3
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 7.1e-09 64.7 122 38.5
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 2.7e-08 62.8 127 37.0
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 1.9e-06 56.6 73 50.7
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 5.6e-06 55.1 113 38.1


User provided reference genes

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