Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0057531 Rosa chinensis HOM05D058191 ORTHO05D020700 2.7e-58 228.4 112 100.0
RcHm_v2.0_Chr5g0003271 Rosa chinensis HOM05D058191 ORTHO05D020700 1.8e-38 162.5 82 97.6
RcHm_v2.0_Chr5g0031741 Rosa chinensis HOM05D000007 ORTHO05D000039 1.8e-17 92.8 57 82.5
RcHm_v2.0_Chr1g0348511 Rosa chinensis HOM05D000007 ORTHO05D000039 1.1e-14 83.6 57 73.7
RcHm_v2.0_Chr5g0031801 Rosa chinensis HOM05D000007 ORTHO05D000039 3.1e-14 82.0 57 73.7
FAN11G1989 Fragaria x ananassa HOM05D000007 ORTHO05D000039 7.0e-14 80.9 57 71.9
FAN16G0092 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.2e-13 80.1 57 68.4
FvH4_3g18911 Fragaria vesca HOM05D000007 ORTHO05D000039 2.0e-13 79.3 58 74.1
FAN11G2343 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.7e-13 79.0 58 75.9
FvH4_3g18890 Fragaria vesca HOM05D000007 ORTHO05D000039 7.7e-13 77.4 58 74.1
RcHm_v2.0_Chr5g0031731 Rosa chinensis HOM05D000007 ORTHO05D000039 1.7e-12 76.3 57 66.7
FvH4_3g18950 Fragaria vesca HOM05D000007 ORTHO05D000039 8.5e-12 73.9 57 63.2
FvH4_3g18910 Fragaria vesca HOM05D000007 ORTHO05D000039 1.9e-11 72.8 57 64.9
Prupe.4G150700 Prunus persica HOM05D000007 ORTHO05D000039 1.9e-11 72.8 59 64.4
FvH4_3g16860 Fragaria vesca HOM05D000007 ORTHO05D000039 4.2e-11 71.6 57 63.2
Prupe.4G151000 Prunus persica HOM05D000007 ORTHO05D000039 5.5e-11 71.2 59 64.4
FvH4_3g18860 Fragaria vesca HOM05D000007 ORTHO05D000039 7.2e-11 70.9 57 57.9
Prupe.5G081800 Prunus persica HOM05D000007 ORTHO05D000039 1.6e-10 69.7 59 59.3
RcHm_v2.0_Chr5g0031751 Rosa chinensis HOM05D000007 ORTHO05D000039 4.7e-10 68.2 52 63.5
FAN28G1446 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.0e-10 67.4 57 61.4
FAN11G0403 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.4e-09 66.6 53 64.2
FvH4_3g18870 Fragaria vesca HOM05D000007 ORTHO05D000039 2.3e-09 65.9 57 64.9
FAN21G3072 Fragaria x ananassa HOM05D000007 ORTHO05D020700 2.3e-09 65.9 57 64.9
FAN19G0203 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.8e-09 64.3 57 57.9
MD11G1031100 Malus domestica HOM05D000007 ORTHO05D000039 8.8e-09 63.9 60 56.7
FAN11G3902 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.5e-08 63.2 57 63.2
FvH4_1g04040 Fragaria vesca HOM05D000007 ORTHO05D000039 4.4e-08 61.6 57 56.1
FAN16G0172 Fragaria x ananassa HOM05D000007 ORTHO05D000039 5.7e-08 61.2 62 50.0
MD03G1028200 Malus domestica HOM05D000007 ORTHO05D000039 5.7e-08 61.2 64 54.7
FAN11G3730 Fragaria x ananassa HOM05D000007 ORTHO05D000039 7.5e-08 60.8 63 47.6
Prupe.4G151100 Prunus persica HOM05D000007 ORTHO05D000039 7.5e-08 60.8 59 54.2
Prupe.5G081900 Prunus persica HOM05D000007 ORTHO05D000039 7.5e-08 60.8 50 60.0
Prupe.4G221400 Prunus persica HOM05D000007 ORTHO05D000039 1.7e-07 59.7 59 54.2
MD05G1206600 Malus domestica HOM05D000007 ORTHO05D020700 2.8e-07 58.9 59 49.2
FvH4_3g18920 Fragaria vesca HOM05D000007 ORTHO05D000039 4.8e-07 58.2 52 51.9
FAN28G1507 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.8e-07 58.2 62 46.8
FvH4_3g16840 Fragaria vesca HOM05D000007 ORTHO05D000039 6.3e-07 57.8 59 49.2
FvH4_3g42390 Fragaria vesca HOM05D000007 ORTHO05D000039 6.3e-07 57.8 62 46.8
FAN11G3667 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.3e-07 57.8 59 49.2
FAN21G0203 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.3e-07 57.8 59 49.2
FAN21G3753 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.3e-07 57.8 59 49.2
RcHm_v2.0_Chr5g0031771 Rosa chinensis HOM05D000007 ORTHO05D000039 1.1e-06 57.0 51 56.9
FvH4_1g04460 Fragaria vesca HOM05D000007 ORTHO05D020700 1.8e-06 56.2 57 50.9
MD03G1028000 Malus domestica HOM05D000007 ORTHO05D000039 3.1e-06 55.5 61 50.8
FAN16G3299 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.1e-06 55.1 59 45.8
MD03G1028100 Malus domestica HOM05D000007 ORTHO05D000039 4.1e-06 55.1 64 46.9
MD03G1027900 Malus domestica HOM05D000007 ORTHO05D000039 5.4e-06 54.7 61 45.9
RcHm_v2.0_Chr5g0075101 Rosa chinensis HOM05D000007 ORTHO05D000039 5.4e-06 54.7 63 49.2


User provided reference genes

Program Settings