Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0057361 Rosa chinensis HOM05D001513 ORTHO05D345875 3.0e-33 144.4 65 100.0
FvH4_1g07670 Fragaria vesca HOM05D001513 ORTHO05D001494 1.1e-11 72.8 65 60.0
FAN28G1636 Fragaria x ananassa HOM05D001513 ORTHO05D001494 1.1e-11 72.8 65 60.0
Sc08g0008530 Simmondsia chinensis HOM05D001513 ORTHO05D001494 2.7e-10 68.2 65 55.4
MD02G1081000 Malus domestica HOM05D001513 ORTHO05D001494 2.3e-09 65.1 65 53.8
AL5G26800 Arabidopsis lyrata HOM05D001513 ORTHO05D001494 3.0e-09 64.7 65 53.8
AT3G47560 Arabidopsis thaliana HOM05D001513 ORTHO05D001494 3.0e-09 64.7 65 53.8
FvH4_1g07700 Fragaria vesca HOM05D001513 ORTHO05D001494 3.0e-09 64.7 65 52.3
FAN19G3006 Fragaria x ananassa HOM05D001513 ORTHO05D001494 3.0e-09 64.7 65 52.3
Medtr2g039510 Medicago truncatula HOM05D001513 ORTHO05D001494 3.0e-09 64.7 65 50.8
Glyma.09G064000 Glycine max HOM05D001513 ORTHO05D001494 3.9e-09 64.3 65 52.3
Glyma.15G170400 Glycine max HOM05D001513 ORTHO05D001494 3.9e-09 64.3 65 52.3
HanXRQChr12g0354581 Helianthus annuus HOM05D001513 ORTHO05D001494 3.9e-09 64.3 65 50.8
RcHm_v2.0_Chr2g0093541 Rosa chinensis HOM05D001513 ORTHO05D001494 3.9e-09 64.3 62 58.1
arahy.Tifrunner.gnm1.ann1.84EG73 Arachis hypogaea HOM05D001513 ORTHO05D001494 5.1e-09 63.9 65 50.8
BcaC01g01802 Brassica carinata HOM05D001513 ORTHO05D001494 5.1e-09 63.9 65 53.8
C03p71790 Brassica napus HOM05D001513 ORTHO05D001494 5.1e-09 63.9 65 53.8
Gohir.A06G073200 Gossypium hirsutum HOM05D001513 ORTHO05D001494 5.1e-09 63.9 65 52.3
Gohir.D06G071700 Gossypium hirsutum HOM05D001513 ORTHO05D001494 5.1e-09 63.9 65 52.3
Prupe.7G208200 Prunus persica HOM05D001513 ORTHO05D001494 5.1e-09 63.9 65 52.3
MD02G1081400 Malus domestica HOM05D001513 ORTHO05D001494 6.7e-09 63.5 65 50.8
vmacro17247 Vaccinium macrocarpon HOM05D001513 ORTHO05D001494 1.1e-08 62.8 65 52.3
FAN28G3003 Fragaria x ananassa HOM05D001513 ORTHO05D001494 1.5e-08 62.4 65 50.8
Lsat_1_v5_gn_5_142901 Lactuca sativa HOM05D001513 ORTHO05D001494 1.5e-08 62.4 65 49.2
Manes.16G101100 Manihot esculenta HOM05D001513 ORTHO05D001494 1.5e-08 62.4 62 54.8
RcHm_v2.0_Chr2g0093561 Rosa chinensis HOM05D001513 ORTHO05D001494 1.5e-08 62.4 65 52.3
AL3G48700 Arabidopsis lyrata HOM05D001513 ORTHO05D001494 1.9e-08 62.0 65 49.2
BcaC01g01803 Brassica carinata HOM05D001513 ORTHO05D001494 1.9e-08 62.0 65 52.3
A06p20030 Brassica napus HOM05D001513 ORTHO05D001494 1.9e-08 62.0 65 52.3
C03p71780 Brassica napus HOM05D001513 ORTHO05D001494 1.9e-08 62.0 65 52.3
BolC3t19467H Brassica oleracea HOM05D001513 ORTHO05D001494 1.9e-08 62.0 65 52.3
BraA06t25089Z Brassica rapa HOM05D001513 ORTHO05D001494 1.9e-08 62.0 65 52.3
CSS0031799 Camellia sinensis var. sinensis HOM05D001513 ORTHO05D001494 1.9e-08 62.0 65 50.8
COL.COLO4_18191 Corchorus olitorius HOM05D001513 ORTHO05D001494 1.9e-08 62.0 65 52.3
VMungo1215G2849 Vigna mungo HOM05D001513 ORTHO05D001494 1.9e-08 62.0 62 51.6
GSVIVG01015190001 Vitis vinifera HOM05D001513 ORTHO05D001494 1.9e-08 62.0 65 50.8
Duzib168G1063 Durio zibethinus HOM05D001513 ORTHO05D001494 2.5e-08 61.6 65 50.8
Thhalv10010563m.g Eutrema salsugineum HOM05D001513 ORTHO05D001494 2.5e-08 61.6 65 52.3
RcHm_v2.0_Chr2g0093521 Rosa chinensis HOM05D001513 ORTHO05D001494 2.5e-08 61.6 65 53.8
Sp5g14325 Schrenkiella parvula HOM05D001513 ORTHO05D001494 2.5e-08 61.6 65 52.3
Thecc.09G087700 Theobroma cacao HOM05D001513 ORTHO05D001494 2.5e-08 61.6 65 50.8
AL5G26850 Arabidopsis lyrata HOM05D001513 ORTHO05D001494 3.3e-08 61.2 65 50.8
Carub.0005s1368 Capsella rubella HOM05D001513 ORTHO05D001494 3.3e-08 61.2 65 52.3
Ca_02169_v3 Cicer arietinum L. HOM05D001513 ORTHO05D001494 3.3e-08 61.2 65 49.2
Gohir.D06G071900 Gossypium hirsutum HOM05D001513 ORTHO05D001494 3.3e-08 61.2 65 50.8
Lj4g0002328 Lotus japonicus HOM05D001513 ORTHO05D001494 3.3e-08 61.2 65 47.7
Psat1g140520 Pisum sativum HOM05D001513 ORTHO05D001494 3.3e-08 61.2 65 49.2
Potri.013G032500 Populus trichocarpa HOM05D001513 ORTHO05D001494 3.3e-08 61.2 65 50.8
Sabra13G0032300 Salix brachista HOM05D001513 ORTHO05D001494 3.3e-08 61.2 65 49.2
Carub.0005s1365 Capsella rubella HOM05D001513 ORTHO05D001494 4.3e-08 60.8 65 50.8
Dinv42326 Davidia involucrata HOM05D001513 ORTHO05D001494 4.3e-08 60.8 65 52.3
AL1G43670 Arabidopsis lyrata HOM05D001513 ORTHO05D001494 5.7e-08 60.5 65 50.8
AT1G29840 Arabidopsis thaliana HOM05D001513 ORTHO05D001494 5.7e-08 60.5 65 50.8
arahy.Tifrunner.gnm1.ann1.JE0YWU Arachis hypogaea HOM05D001513 ORTHO05D001494 5.7e-08 60.5 65 47.7
arahy.Tifrunner.gnm1.ann1.MK4DX9 Arachis hypogaea HOM05D001513 ORTHO05D001494 5.7e-08 60.5 65 49.2
arahy.Tifrunner.gnm1.ann1.V7GITX Arachis hypogaea HOM05D001513 ORTHO05D001494 5.7e-08 60.5 65 47.7
CiPaw.04G148600 Carya illinoinensis HOM05D001513 ORTHO05D001494 5.7e-08 60.5 65 50.8
Lj7A677G53 Lonicera japonica HOM05D001513 ORTHO05D001494 5.7e-08 60.5 65 50.8
Peaxi162Scf00604g00421 Petunia axillaris HOM05D001513 ORTHO05D001494 5.7e-08 60.5 65 50.8
Sopen07g019090 Solanum pennellii HOM05D001513 ORTHO05D001494 5.7e-08 60.5 65 50.8
AT3G47590 Arabidopsis thaliana HOM05D001513 ORTHO05D001494 7.4e-08 60.1 65 50.8
Lsat_1_v5_gn_5_142881 Lactuca sativa HOM05D001513 ORTHO05D001494 7.4e-08 60.1 65 52.3
Lj4A302G10 Lonicera japonica HOM05D001513 ORTHO05D001494 7.4e-08 60.1 65 49.2
Lj6g0001116 Lotus japonicus HOM05D001513 ORTHO05D001494 7.4e-08 60.1 65 49.2
Sp5g14320 Schrenkiella parvula HOM05D001513 ORTHO05D001494 7.4e-08 60.1 65 50.8
THA.LOC104814624 Tarenaya hassleriana HOM05D001513 ORTHO05D001494 7.4e-08 60.1 65 50.8
arahy.Tifrunner.gnm1.ann1.A2Z5WA Arachis hypogaea HOM05D001513 ORTHO05D001494 9.7e-08 59.7 65 49.2
arahy.Tifrunner.gnm1.ann1.U7X5PN Arachis hypogaea HOM05D001513 ORTHO05D001494 9.7e-08 59.7 65 49.2
MSTRG.19507 Avicennia marina HOM05D001513 ORTHO05D001494 9.7e-08 59.7 65 50.8
BcaB01g00904 Brassica carinata HOM05D001513 ORTHO05D001494 9.7e-08 59.7 65 50.8
HanXRQChr12g0354571 Helianthus annuus HOM05D001513 ORTHO05D001494 9.7e-08 59.7 65 49.2
MD15G1208700 Malus domestica HOM05D001513 ORTHO05D001494 9.7e-08 59.7 65 47.7
RcHm_v2.0_Chr2g0093511 Rosa chinensis HOM05D001513 ORTHO05D001494 9.7e-08 59.7 65 49.2
GSVIVG01015191001 Vitis vinifera HOM05D001513 ORTHO05D001494 9.7e-08 59.7 65 49.2
BcaB01g00905 Brassica carinata HOM05D001513 ORTHO05D001494 1.3e-07 59.3 63 54.0
CSS0024859 Camellia sinensis var. sinensis HOM05D001513 ORTHO05D001494 1.3e-07 59.3 65 49.2
CsaV3_1G040560 Cucumis sativus L. HOM05D001513 ORTHO05D001494 1.3e-07 59.3 62 50.0
MD02G1094000 Malus domestica HOM05D001513 ORTHO05D001494 1.3e-07 59.3 65 49.2
Nitab4.5_0010540g0030 Nicotiana tabacum HOM05D001513 ORTHO05D001494 1.3e-07 59.3 65 49.2
vmacro17250 Vaccinium macrocarpon HOM05D001513 ORTHO05D001494 1.3e-07 59.3 65 47.7
BcaC01g02285 Brassica carinata HOM05D001513 ORTHO05D001494 1.6e-07 58.9 65 49.2
C03p67040 Brassica napus HOM05D001513 ORTHO05D001494 1.6e-07 58.9 65 49.2
BolC3t18978H Brassica oleracea HOM05D001513 ORTHO05D001494 1.6e-07 58.9 65 49.2
CANSAT56G0224 Cannabis sativa HOM05D001513 ORTHO05D001494 1.6e-07 58.9 65 47.7
Ca_21283_v3 Cicer arietinum L. HOM05D001513 ORTHO05D001494 1.6e-07 58.9 62 50.0
CAN.G424.23 Capsicum annuum HOM05D001513 ORTHO05D001494 2.2e-07 58.5 65 47.7
Cc06_g11500 Coffea canephora HOM05D001513 ORTHO05D001494 2.2e-07 58.5 62 51.6
FvH4_1g07650 Fragaria vesca HOM05D001513 ORTHO05D001494 2.2e-07 58.5 65 49.2
FvH4_1g07671 Fragaria vesca HOM05D001513 ORTHO05D001494 2.2e-07 58.5 65 49.2
FvH4_1g07690 Fragaria vesca HOM05D001513 ORTHO05D001494 2.2e-07 58.5 65 49.2
FAN19G1837 Fragaria x ananassa HOM05D001513 ORTHO05D001494 2.2e-07 58.5 65 49.2
FAN23G1556 Fragaria x ananassa HOM05D001513 ORTHO05D001494 2.2e-07 58.5 65 49.2
FAN26G1523 Fragaria x ananassa HOM05D001513 ORTHO05D001494 2.2e-07 58.5 65 49.2
Nitab4.5_0010634g0040 Nicotiana tabacum HOM05D001513 ORTHO05D001494 2.2e-07 58.5 65 49.2
Potri.018G068000 Populus trichocarpa HOM05D001513 ORTHO05D001494 2.2e-07 58.5 65 47.7
QL02p062398 Quercus lobata HOM05D001513 ORTHO05D001494 2.2e-07 58.5 65 47.7
CAN.G339.38 Capsicum annuum HOM05D001513 ORTHO05D001494 2.8e-07 58.2 65 49.2
ClCG03G015490 Citrullus lanatus HOM05D001513 ORTHO05D001494 2.8e-07 58.2 62 51.6
Thhalv10010963m.g Eutrema salsugineum HOM05D001513 ORTHO05D001494 2.8e-07 58.2 65 47.7
FAN19G2451 Fragaria x ananassa HOM05D001513 ORTHO05D001494 2.8e-07 58.2 65 47.7
Lalb_Chr13g0299661 Lupinus albus HOM05D001513 ORTHO05D001494 2.8e-07 58.2 62 51.6
Lalb_Chr13g0299681 Lupinus albus HOM05D001513 ORTHO05D001494 2.8e-07 58.2 65 46.2
Medtr2g039450 Medicago truncatula HOM05D001513 ORTHO05D001494 2.8e-07 58.2 65 47.7
Atru.chr7.1610 Acer truncatum HOM05D001513 ORTHO05D001494 3.7e-07 57.8 65 49.2
Eucgr.C00879 Eucalyptus grandis HOM05D001513 ORTHO05D001494 3.7e-07 57.8 65 49.2
FAN23G0401 Fragaria x ananassa HOM05D001513 ORTHO05D001494 3.7e-07 57.8 65 49.2
Glyma.13G105300 Glycine max HOM05D001513 ORTHO05D001494 3.7e-07 57.8 62 48.4
HanXRQChr12g0355011 Helianthus annuus HOM05D001513 ORTHO05D001494 3.7e-07 57.8 65 49.2
Rhsim05G0018700 Rhododendron simsii HOM05D001513 ORTHO05D001494 3.7e-07 57.8 65 46.2
TPR.G29941 Trifolium pratense HOM05D001513 ORTHO05D001494 3.7e-07 57.8 65 46.2
TWI34G0577 Tripterygium wilfordii HOM05D001513 ORTHO05D001494 3.7e-07 57.8 65 49.2
Actinidia25246 Actinidia chinensis HOM05D000113 ORTHO05D003010 4.8e-07 57.4 65 47.7
CARHR156250 Cardamine hirsuta HOM05D001513 ORTHO05D001494 4.8e-07 57.4 65 49.2
AUR62033950 Chenopodium quinoa HOM05D001513 ORTHO05D001494 4.8e-07 57.4 65 47.7
MD02G1080900 Malus domestica HOM05D001513 ORTHO05D001494 4.8e-07 57.4 65 47.7
Medtr2g039570 Medicago truncatula HOM05D001513 ORTHO05D001494 4.8e-07 57.4 65 44.6
Oeu039604.2 Olea europaea HOM05D001513 ORTHO05D001494 4.8e-07 57.4 65 49.2
Sed0006940 Sechium edule HOM05D001513 ORTHO05D001494 4.8e-07 57.4 62 53.2
Thecc.09G087500 Theobroma cacao HOM05D001513 ORTHO05D001494 4.8e-07 57.4 65 47.7
Ciclev10008941m.g Citrus clementina HOM05D001513 ORTHO05D001494 6.3e-07 57.0 65 44.6
FAN06G3941 Fragaria x ananassa HOM05D001513 ORTHO05D001494 6.3e-07 57.0 65 47.7
FAN23G3133 Fragaria x ananassa HOM05D001513 ORTHO05D001494 6.3e-07 57.0 65 47.7
MBI04_g34118_MAGBIO Magnolia biondii HOM05D001513 ORTHO05D001494 6.3e-07 57.0 65 49.2
Actinidia39711 Actinidia chinensis HOM05D001513 ORTHO05D001494 8.2e-07 56.6 65 46.2
ATR0733G166 Amborella trichopoda HOM05D001513 ORTHO05D001494 8.2e-07 56.6 65 46.2
A06p20040 Brassica napus HOM05D001513 ORTHO05D001494 8.2e-07 56.6 62 50.0
Cfa003072 Carpinus fangiana HOM05D001513 ORTHO05D001494 8.2e-07 56.6 65 46.2
FAN26G0480 Fragaria x ananassa HOM05D001513 ORTHO05D001494 8.2e-07 56.6 65 47.7
PGR142G4218 Punica granatum HOM05D001513 ORTHO05D001494 8.2e-07 56.6 62 50.0
AUR62029054 Chenopodium quinoa HOM05D001513 ORTHO05D001494 1.1e-06 56.2 65 46.2
MELO3C015483.2 Cucumis melo HOM05D001513 ORTHO05D001494 1.1e-06 56.2 62 48.4
Duzib187G0597 Durio zibethinus HOM05D001513 ORTHO05D001494 1.1e-06 56.2 65 47.7
Medtr2g039480 Medicago truncatula HOM05D001513 ORTHO05D001494 1.1e-06 56.2 65 46.2
Sabra18G0059400 Salix brachista HOM05D001513 ORTHO05D001494 1.1e-06 56.2 65 46.2
Cfa003073 Carpinus fangiana HOM05D001513 ORTHO05D001494 1.4e-06 55.8 65 46.2
Dinv36775 Davidia involucrata HOM05D000113 ORTHO05D003010 1.4e-06 55.8 65 49.2
Oeu017603.3 Olea europaea HOM05D001513 ORTHO05D001494 1.4e-06 55.8 65 47.7
Oeu056313.2 Olea europaea HOM05D001513 ORTHO05D001494 1.4e-06 55.8 65 47.7
PGR142G4242 Punica granatum HOM05D001513 ORTHO05D001494 1.4e-06 55.8 62 50.0
FAN01G3029 Fragaria x ananassa HOM05D001513 ORTHO05D001494 1.8e-06 55.5 65 44.6
RcHm_v2.0_Chr2g0093551 Rosa chinensis HOM05D001513 ORTHO05D001494 1.8e-06 55.5 65 49.2
unitig_8.g3525 Utricularia gibba HOM05D001513 ORTHO05D001494 1.8e-06 55.5 65 47.7
SalBow6G1115 Salvia bowleyana HOM05D001513 ORTHO05D001494 2.4e-06 55.1 65 44.6
ECA234G3678 Erigeron canadensis HOM05D001513 ORTHO05D001494 3.1e-06 54.7 62 50.0
Glyma.17G054200 Glycine max HOM05D001513 ORTHO05D001494 3.1e-06 54.7 62 50.0
FAN28G2461 Fragaria x ananassa HOM05D001513 ORTHO05D001494 4.1e-06 54.3 65 46.2
TAR626G0461 Trochodendron aralioides HOM05D001513 ORTHO05D001494 4.1e-06 54.3 65 49.2
AUR62029053 Chenopodium quinoa HOM05D001513 ORTHO05D001494 5.3e-06 53.9 65 44.6
Phvul.003G135800 Phaseolus vulgaris HOM05D001513 ORTHO05D001494 5.3e-06 53.9 62 46.8
unitig_749.g14228 Utricularia gibba HOM05D001513 ORTHO05D001494 5.3e-06 53.9 65 43.1
unitig_78.g29618 Utricularia gibba HOM05D001513 ORTHO05D001494 5.3e-06 53.9 65 43.1
Os01g0579900 Oryza sativa ssp. japonica HOM05D001513 ORTHO05D001494 6.9e-06 53.5 65 44.6
RcHm_v2.0_Chr2g0093531 Rosa chinensis HOM05D001513 ORTHO05D001494 6.9e-06 53.5 65 47.7
DCAR_011968 Daucus carota HOM05D000113 ORTHO05D003010 9.0e-06 53.1 65 44.6
SGA_v2.0_scaffold62G21620 Striga asiatica HOM05D001513 ORTHO05D001494 9.0e-06 53.1 65 46.2


User provided reference genes

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