Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 6.1e-34 146.7 66 100.0
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 2.0e-21 105.1 102 53.9
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 9.8e-16 86.3 102 45.1
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 9.8e-16 86.3 102 45.1
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 3.7e-15 84.3 102 44.1
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 4.9e-15 84.0 102 44.1
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 7.8e-13 76.6 102 39.2
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 1.0e-12 76.3 102 39.2
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.7e-12 75.5 103 37.9
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.3e-12 75.1 102 39.2
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 2.9e-12 74.7 102 38.2
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 3.9e-12 74.3 102 38.2
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 3.9e-12 74.3 102 38.2
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 3.9e-12 74.3 102 37.3
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 5.0e-12 73.9 103 36.9
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 5.0e-12 73.9 103 36.9
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 5.0e-12 73.9 103 36.9
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 5.0e-12 73.9 102 38.2
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 6.6e-12 73.6 102 38.2
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 8.6e-12 73.2 102 37.3
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 8.6e-12 73.2 102 38.2
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 8.6e-12 73.2 102 37.3
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 8.6e-12 73.2 102 37.3
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 1.1e-11 72.8 102 37.3
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 1.1e-11 72.8 102 37.3
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 1.1e-11 72.8 102 37.3
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 1.1e-11 72.8 102 38.2
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 1.1e-11 72.8 102 37.3
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 1.5e-11 72.4 102 37.3
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 1.5e-11 72.4 102 37.3
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 1.9e-11 72.0 102 37.3
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 1.9e-11 72.0 102 37.3
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 1.9e-11 72.0 102 37.3
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 1.9e-11 72.0 102 37.3
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 1.9e-11 72.0 102 37.3
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.5e-11 71.6 102 37.3
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 3.3e-11 71.2 102 35.3
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 3.3e-11 71.2 102 36.3
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 4.3e-11 70.9 102 35.3
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 4.3e-11 70.9 102 39.2
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.3e-11 70.9 102 35.3
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 7.3e-11 70.1 102 35.3
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 9.5e-11 69.7 102 34.3
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 9.5e-11 69.7 102 35.3
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 1.2e-10 69.3 102 34.3
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 1.2e-10 69.3 102 35.3
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.2e-10 69.3 102 34.3
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 1.2e-10 69.3 100 36.0
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 1.6e-10 68.9 102 33.3
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 2.1e-10 68.6 102 35.3
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 3.6e-10 67.8 102 35.3
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 4.7e-10 67.4 102 32.4
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 6.1e-10 67.0 102 35.3
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 6.1e-10 67.0 102 35.3
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 6.1e-10 67.0 102 33.3
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 8.0e-10 66.6 102 34.3
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 8.0e-10 66.6 102 35.3
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 8.0e-10 66.6 102 33.3
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.0e-09 66.2 102 32.4
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 1.0e-09 66.2 100 35.0
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 1.4e-09 65.9 104 35.6
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 1.4e-09 65.9 102 34.3
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 1.8e-09 65.5 102 35.3
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 3.1e-09 64.7 100 33.0
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 3.1e-09 64.7 102 33.3
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 4.0e-09 64.3 102 32.4
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 6.8e-09 63.5 102 31.4
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 6.8e-09 63.5 102 31.4
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 6.8e-09 63.5 102 31.4
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 8.9e-09 63.2 102 32.4
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 8.9e-09 63.2 99 33.3
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 1.2e-08 62.8 102 32.4
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 1.2e-08 62.8 101 33.7
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 1.2e-08 62.8 100 35.0
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 1.5e-08 62.4 102 31.4
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 1.5e-08 62.4 102 30.4
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.5e-08 62.4 102 32.4
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 2.0e-08 62.0 100 33.0
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 2.0e-08 62.0 102 31.4
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 2.0e-08 62.0 38 73.7
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 2.0e-08 62.0 102 32.4
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.6e-08 61.6 102 33.3
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 3.4e-08 61.2 58 46.6
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 4.4e-08 60.8 102 31.4
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 4.4e-08 60.8 102 32.4
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 5.8e-08 60.5 102 30.4
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.8e-08 60.5 103 30.1
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.8e-08 60.5 101 30.7
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.8e-08 60.5 103 30.1
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.8e-08 60.5 101 30.7
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 5.8e-08 60.5 101 30.7
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 7.5e-08 60.1 102 31.4
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 7.5e-08 60.1 102 32.4
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 9.8e-08 59.7 103 30.1
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 9.8e-08 59.7 102 30.4
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 1.3e-07 59.3 102 32.4
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 1.3e-07 59.3 102 32.4
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 1.7e-07 58.9 35 71.4
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 2.2e-07 58.5 102 30.4
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 2.9e-07 58.2 102 27.5
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 2.9e-07 58.2 102 29.4
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 2.9e-07 58.2 102 32.4
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 4.9e-07 57.4 96 30.2
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 4.9e-07 57.4 96 30.2
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 8.3e-07 56.6 36 63.9
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 8.3e-07 56.6 102 26.5
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 8.3e-07 56.6 102 31.4
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 2.4e-06 55.1 102 29.4
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 4.1e-06 54.3 102 28.4
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 4.1e-06 54.3 102 27.5
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 9.2e-06 53.1 102 30.4


User provided reference genes

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