Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 1.5e-39 165.6 76 100.0
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 1.6e-33 145.6 68 97.1
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 3.0e-32 141.4 66 97.0
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 1.5e-31 139.0 69 91.3
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 1.6e-30 135.6 69 89.9
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 1.6e-30 135.6 69 89.9
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 1.6e-30 135.6 69 89.9
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 4.7e-30 134.0 69 88.4
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 8.0e-30 133.3 69 88.4
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 1.8e-29 132.1 69 87.0
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 6.8e-29 130.2 69 85.5
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 8.9e-29 129.8 69 84.1
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 2.6e-28 128.3 69 82.6
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 3.4e-28 127.9 70 81.4
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 4.4e-28 127.5 69 84.1
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 5.8e-28 127.1 69 79.7
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 5.8e-28 127.1 70 78.6
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 5.8e-28 127.1 70 78.6
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 5.8e-28 127.1 70 78.6
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 5.8e-28 127.1 70 78.6
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 5.8e-28 127.1 70 78.6
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 5.8e-28 127.1 69 81.2
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 5.8e-28 127.1 69 79.7
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 7.5e-28 126.7 69 82.6
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 7.5e-28 126.7 69 81.2
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 7.5e-28 126.7 69 81.2
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 7.5e-28 126.7 69 82.6
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 7.5e-28 126.7 69 81.2
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 9.8e-28 126.3 70 78.6
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 1.7e-27 125.6 70 78.6
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 1.7e-27 125.6 69 81.2
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 1.7e-27 125.6 69 81.2
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 1.7e-27 125.6 69 81.2
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 1.7e-27 125.6 69 81.2
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 2.2e-27 125.2 70 78.6
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 2.2e-27 125.2 70 78.6
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 2.2e-27 125.2 70 78.6
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 2.2e-27 125.2 70 78.6
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 2.2e-27 125.2 70 78.6
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 2.2e-27 125.2 69 79.7
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 2.2e-27 125.2 69 81.2
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 2.9e-27 124.8 69 79.7
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 2.9e-27 124.8 70 78.6
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 2.9e-27 124.8 69 79.7
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 3.7e-27 124.4 70 77.1
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 3.7e-27 124.4 69 78.3
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 3.7e-27 124.4 69 79.7
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 3.7e-27 124.4 69 82.6
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 4.9e-27 124.0 69 76.8
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 4.9e-27 124.0 69 81.2
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 4.9e-27 124.0 69 76.8
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 4.9e-27 124.0 69 76.8
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 4.9e-27 124.0 69 81.2
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 4.9e-27 124.0 69 76.8
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 6.4e-27 123.6 69 79.7
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 6.4e-27 123.6 70 75.7
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 6.4e-27 123.6 69 78.3
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 6.4e-27 123.6 69 78.3
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 6.4e-27 123.6 69 78.3
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 6.4e-27 123.6 70 78.6
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 6.4e-27 123.6 70 77.1
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 8.3e-27 123.2 69 79.7
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 1.1e-26 122.9 70 77.1
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 1.1e-26 122.9 69 73.9
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 1.4e-26 122.5 69 78.3
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 1.9e-26 122.1 70 77.1
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 1.9e-26 122.1 70 75.7
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 1.9e-26 122.1 70 75.7
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 1.9e-26 122.1 69 76.8
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 1.9e-26 122.1 69 78.3
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 2.4e-26 121.7 69 76.8
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 3.2e-26 121.3 69 73.9
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 3.2e-26 121.3 70 74.3
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 5.4e-26 120.6 69 76.8
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 5.4e-26 120.6 69 75.4
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 7.0e-26 120.2 72 73.6
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 7.0e-26 120.2 69 76.8
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 9.2e-26 119.8 69 79.7
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 9.2e-26 119.8 70 75.7
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 9.2e-26 119.8 69 73.9
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 1.2e-25 119.4 69 79.7
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 2.0e-25 118.6 70 74.3
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 2.0e-25 118.6 69 75.4
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 2.0e-25 118.6 69 75.4
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 2.0e-25 118.6 69 75.4
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 2.0e-25 118.6 69 75.4
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 2.0e-25 118.6 69 76.8
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 2.7e-25 118.2 69 75.4
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 2.7e-25 118.2 69 76.8
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 4.6e-25 117.5 69 73.9
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 4.6e-25 117.5 69 76.8
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 6.0e-25 117.1 69 72.5
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 6.0e-25 117.1 69 71.0
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 1.0e-24 116.3 69 75.4
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 1.3e-24 115.9 69 72.5
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 1.3e-24 115.9 72 72.2
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 1.7e-24 115.5 69 73.9
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 3.9e-24 114.4 69 73.9
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 3.9e-24 114.4 69 73.9
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 3.9e-24 114.4 72 68.1
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 5.0e-24 114.0 72 73.6
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 6.6e-24 113.6 69 69.6
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 8.6e-24 113.2 69 73.9
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 1.5e-23 112.5 69 72.5
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 1.9e-23 112.1 69 69.6
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 2.5e-23 111.7 69 71.0
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 2.5e-23 111.7 69 71.0
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 4.3e-23 110.9 69 71.0
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 7.3e-23 110.2 69 71.0
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 7.3e-23 110.2 69 68.1
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 7.3e-23 110.2 69 72.5
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 3.1e-21 104.8 65 69.2
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 3.1e-21 104.8 71 64.8
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 8.9e-21 103.2 69 62.3
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 2.9e-19 98.2 69 59.4
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 4.6e-17 90.9 69 55.1
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 2.5e-15 85.1 72 47.2
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 3.3e-15 84.7 64 57.8
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 2.4e-13 78.6 41 80.5
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 9.9e-12 73.2 70 47.1
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 3.9e-08 61.2 69 40.6


User provided reference genes

Program Settings