Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0056671 Rosa chinensis HOM05D006252 ORTHO05D007909 8.0e-98 360.5 196 100.0
FAN16G0084 Fragaria x ananassa HOM05D006252 ORTHO05D007909 4.5e-93 344.7 196 94.4
FAN21G1285 Fragaria x ananassa HOM05D006252 ORTHO05D007909 7.7e-93 344.0 196 93.9
FvH4_3g30600 Fragaria vesca HOM05D006252 ORTHO05D007909 1.3e-92 343.2 196 94.4
FAN11G0619 Fragaria x ananassa HOM05D006252 ORTHO05D007909 1.3e-92 343.2 196 94.4
FAN25G2218 Fragaria x ananassa HOM05D006252 ORTHO05D007909 2.9e-92 342.0 196 93.4
Prupe.6G113200 Prunus persica HOM05D006252 ORTHO05D007909 3.1e-86 322.0 196 87.8
MD03G1128600 Malus domestica HOM05D006252 ORTHO05D007909 7.0e-86 320.9 196 87.2
MD11G1148800 Malus domestica HOM05D006252 ORTHO05D007909 2.0e-85 319.3 196 86.7
QL01p014977 Quercus lobata HOM05D006252 ORTHO05D007909 1.2e-80 303.5 195 83.1
TAR633G0073 Trochodendron aralioides HOM05D006252 ORTHO05D007909 2.4e-78 295.8 196 80.1
CiPaw.13G122300 Carya illinoinensis HOM05D006252 ORTHO05D007909 9.2e-78 293.9 196 81.1
Cpa.g.sc47.1 Carica papaya HOM05D006252 ORTHO05D007909 3.5e-77 292.0 195 80.0
Manes.11G152500 Manihot esculenta HOM05D006252 ORTHO05D007909 2.3e-76 289.3 194 80.4
Cfa010288 Carpinus fangiana HOM05D006252 ORTHO05D007909 1.1e-75 287.0 196 80.6
Atru.chr3.3505 Acer truncatum HOM05D006252 ORTHO05D007909 3.3e-75 285.4 195 77.9
PSO063G5667 Papaver somniferum HOM05D006252 ORTHO05D007909 7.3e-75 284.3 197 76.6
Ciclev10029219m.g Citrus clementina HOM05D006252 ORTHO05D007909 9.5e-75 283.9 195 76.4
CSS0004051 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 2.1e-74 282.7 198 77.8
CSS0044427 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 2.1e-74 282.7 198 77.8
PSO339G3106 Papaver somniferum HOM05D006252 ORTHO05D007909 3.6e-74 282.0 197 75.6
PGR102G1698 Punica granatum HOM05D006252 ORTHO05D007909 3.6e-74 282.0 197 78.2
Nn6g35212 Nelumbo nucifera HOM05D006252 ORTHO05D007909 6.2e-74 281.2 197 77.7
Thecc.09G298300 Theobroma cacao HOM05D006252 ORTHO05D007909 3.1e-73 278.9 195 77.9
Sabra04G0147700 Salix brachista HOM05D006252 ORTHO05D007909 8.9e-73 277.3 192 78.1
Hma1.2p1_0051F.1_g029510 Hydrangea macrophylla HOM05D006252 ORTHO05D007909 2.6e-72 275.8 198 73.7
Sabra09G0002100 Salix brachista HOM05D006252 ORTHO05D007909 2.6e-72 275.8 195 75.4
Potri.004G217000 Populus trichocarpa HOM05D006252 ORTHO05D007909 3.4e-72 275.4 194 76.3
Cc08_g04460 Coffea canephora HOM05D006252 ORTHO05D007909 4.4e-72 275.0 199 76.4
CsaV3_1G013140 Cucumis sativus L. HOM05D006252 ORTHO05D007909 4.4e-72 275.0 199 75.4
Cc01_g10250 Coffea canephora HOM05D006252 ORTHO05D007909 5.8e-72 274.6 199 76.9
Gorai.009G090100 Gossypium raimondii HOM05D006252 ORTHO05D007909 5.8e-72 274.6 194 77.8
Aa31LG4G14200 Aethionema arabicum HOM05D006252 ORTHO05D007909 1.7e-71 273.1 196 72.4
Gohir.D05G088000 Gossypium hirsutum HOM05D006252 ORTHO05D007909 1.7e-71 273.1 194 77.3
Thhalv10002672m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 2.9e-71 272.3 196 74.0
Gohir.A05G086700 Gossypium hirsutum HOM05D006252 ORTHO05D007909 6.4e-71 271.2 194 76.3
HanXRQChr02g0055341 Helianthus annuus HOM05D006252 ORTHO05D007909 6.4e-71 271.2 199 75.9
AL5G23350 Arabidopsis lyrata HOM05D006252 ORTHO05D007909 8.3e-71 270.8 196 73.0
COL.COLO4_19198 Corchorus olitorius HOM05D006252 ORTHO05D007909 8.3e-71 270.8 195 75.9
MELO3C004995.2 Cucumis melo HOM05D006252 ORTHO05D007909 8.3e-71 270.8 199 74.4
BcaB05g23061 Brassica carinata HOM05D006252 ORTHO05D007909 1.4e-70 270.0 198 74.2
BcaC09g49661 Brassica carinata HOM05D006252 ORTHO05D007909 1.4e-70 270.0 198 74.2
C01p34110 Brassica napus HOM05D006252 ORTHO05D007909 1.4e-70 270.0 198 74.2
BolC1t03381H Brassica oleracea HOM05D006252 ORTHO05D007909 1.4e-70 270.0 198 74.2
AT3G44890 Arabidopsis thaliana HOM05D006252 ORTHO05D007909 1.9e-70 269.6 196 71.4
Carub.0005s1063 Capsella rubella HOM05D006252 ORTHO05D007909 2.4e-70 269.2 196 70.9
A01p26720 Brassica napus HOM05D006252 ORTHO05D007909 7.0e-70 267.7 198 73.7
BraA01t02602Z Brassica rapa HOM05D006252 ORTHO05D007909 7.0e-70 267.7 198 73.7
CARHR151120 Cardamine hirsuta HOM05D006252 ORTHO05D007909 7.0e-70 267.7 196 72.4
ClCG03G002460 Citrullus lanatus HOM05D006252 ORTHO05D007909 7.0e-70 267.7 199 73.9
Sp5g16320 Schrenkiella parvula HOM05D006252 ORTHO05D007909 7.0e-70 267.7 196 73.0
Glyma.11G192500 Glycine max HOM05D006252 ORTHO05D007909 1.6e-69 266.5 199 76.4
Sed0008981 Sechium edule HOM05D006252 ORTHO05D007909 1.6e-69 266.5 199 72.4
TWI79G1340 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 1.6e-69 266.5 195 72.8
Aqoxy1G01090 Aquilegia oxysepala HOM05D006252 ORTHO05D007909 2.1e-69 266.2 196 72.4
MSTRG.18705 Avicennia marina HOM05D006252 ORTHO05D007909 2.1e-69 266.2 198 73.2
Glyma.12G081500 Glycine max HOM05D006252 ORTHO05D007909 2.1e-69 266.2 198 75.8
CDE08G0788 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 2.7e-69 265.8 192 74.0
AUR62014977 Chenopodium quinoa HOM05D006252 ORTHO05D007909 2.7e-69 265.8 197 73.1
THA.LOC104810882 Tarenaya hassleriana HOM05D006252 ORTHO05D007909 2.7e-69 265.8 194 73.7
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 3.5e-69 265.4 192 74.0
Lj2A1006G34 Lonicera japonica HOM05D006252 ORTHO05D007909 1.7e-68 263.1 200 72.0
VMungo1127G0830 Vigna mungo HOM05D006252 ORTHO05D007909 3.0e-68 262.3 197 74.1
arahy.Tifrunner.gnm1.ann1.Q498P0 Arachis hypogaea HOM05D006252 ORTHO05D007909 3.9e-68 261.9 198 74.2
Phvul.011G086500 Phaseolus vulgaris HOM05D006252 ORTHO05D007909 3.9e-68 261.9 197 74.1
CDE02G0854 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 5.0e-68 261.5 192 72.4
AUR62029150 Chenopodium quinoa HOM05D006252 ORTHO05D007909 6.6e-68 261.2 197 71.6
arahy.Tifrunner.gnm1.ann1.4A8W5C Arachis hypogaea HOM05D006252 ORTHO05D007909 8.6e-68 260.8 198 74.2
Ca_19323_v3 Cicer arietinum L. HOM05D006252 ORTHO05D007909 8.6e-68 260.8 200 69.5
Migut.D02295 Erythranthe guttata HOM05D006252 ORTHO05D007909 8.6e-68 260.8 200 74.0
Actinidia07187 Actinidia chinensis HOM05D006252 ORTHO05D007909 7.3e-67 257.7 197 71.1
EL10Ac9g22626 Beta vulgaris HOM05D006252 ORTHO05D007909 1.2e-66 256.9 197 71.6
vmacro14388 Vaccinium macrocarpon HOM05D006252 ORTHO05D007909 2.8e-66 255.8 200 69.0
TPR.G36832 Trifolium pratense HOM05D006252 ORTHO05D007909 4.7e-66 255.0 195 69.2
GSVIVG01031460001 Vitis vinifera HOM05D006252 ORTHO05D007909 4.7e-66 255.0 160 83.8
Lj3g0021853 Lotus japonicus HOM05D006252 ORTHO05D007909 1.1e-65 253.8 197 71.6
Hund01525 Selenicereus undatus HOM05D006252 ORTHO05D007909 1.4e-65 253.4 193 72.0
Solyc11g066410.2 Solanum lycopersicum HOM05D006252 ORTHO05D007909 1.4e-65 253.4 191 68.6
unitig_746.g26615 Utricularia gibba HOM05D006252 ORTHO05D007909 1.4e-65 253.4 196 73.0
Lalb_Chr03g0027721 Lupinus albus HOM05D006252 ORTHO05D007909 3.1e-65 252.3 197 72.6
SalBow6G6884 Salvia bowleyana HOM05D006252 ORTHO05D007909 4.0e-65 251.9 215 69.3
PGSC0003DMG400000456 Solanum tuberosum HOM05D006252 ORTHO05D007909 4.0e-65 251.9 191 68.1
TWI75G0936 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 4.0e-65 251.9 196 69.9
Sopen11g026160 Solanum pennellii HOM05D006252 ORTHO05D007909 5.2e-65 251.5 191 68.6
Nitab4.5_0005665g0020 Nicotiana tabacum HOM05D006252 ORTHO05D007909 6.8e-65 251.1 196 70.4
Peaxi162Scf00983g00015 Petunia axillaris HOM05D006252 ORTHO05D007909 1.2e-64 250.4 197 70.1
SGA_v2.0_scaffold277G46698 Striga asiatica HOM05D006252 ORTHO05D007909 2.6e-64 249.2 199 69.3
Psat7g223760 Pisum sativum HOM05D006252 ORTHO05D007909 3.4e-64 248.8 195 68.7
ECA233G2302 Erigeron canadensis HOM05D006252 ORTHO05D007909 4.4e-64 248.4 202 69.8
HPP92_003365 Vanilla planifolia HOM05D006252 ORTHO05D007909 4.4e-64 248.4 193 69.4
Lalb_Chr19g0136901 Lupinus albus HOM05D006252 ORTHO05D007909 1.7e-63 246.5 197 72.1
ATR0043G002 Amborella trichopoda HOM05D006252 ORTHO05D007909 2.9e-63 245.7 161 80.7
MBI02_g05768_MAGBIO Magnolia biondii HOM05D006252 ORTHO05D007909 2.9e-63 245.7 147 87.1
Medtr4g057210 Medicago truncatula HOM05D006252 ORTHO05D007909 2.9e-63 245.7 192 68.8
Rhsim01G0210400 Rhododendron simsii HOM05D006252 ORTHO05D007909 4.9e-63 245.0 198 68.7
Nitab4.5_0000173g0140 Nicotiana tabacum HOM05D006252 ORTHO05D007909 1.4e-62 243.4 195 68.7
Dinv16227 Davidia involucrata HOM05D006252 ORTHO05D007909 1.1e-59 233.8 148 81.8
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 4.0e-57 225.3 194 60.3
AagrBONN_evm.TU.Sc2ySwM_362.2261 Anthoceros agrestis HOM05D006252 ORTHO05D007909 3.4e-48 195.7 157 59.9
Mapoly0005s0034 Marchantia polymorpha HOM05D006252 ORTHO05D007909 1.1e-46 190.7 204 51.5
Sc21g0000330 Simmondsia chinensis HOM05D006252 ORTHO05D007909 3.6e-42 175.6 141 68.1
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 3.1e-41 172.6 157 54.1
Pp3c1_5300 Physcomitrium patens HOM05D006252 ORTHO05D007909 9.9e-40 167.5 158 53.8
Pp3c1_5320 Physcomitrium patens HOM05D006252 ORTHO05D007909 9.9e-40 167.5 158 53.8
SMO118G0111 Selaginella moellendorffii HOM05D006252 ORTHO05D007909 1.7e-39 166.8 157 54.8
Pp3c2_34120 Physcomitrium patens HOM05D006252 ORTHO05D007909 2.2e-39 166.4 194 47.9
Pp3c2_34110 Physcomitrium patens HOM05D006252 ORTHO05D007909 3.8e-39 165.6 194 47.9
Haze_24363 Corylus avellana HOM05D006252 ORTHO05D007909 8.4e-39 164.5 105 83.8
Thhalv10023194m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 7.9e-37 157.9 102 81.4
arahy.Tifrunner.gnm1.ann1.151HRH Arachis hypogaea HOM05D006252 ORTHO05D007909 3.9e-36 155.6 103 80.6
Oeu007732.1 Olea europaea HOM05D006252 ORTHO05D007909 9.6e-35 151.0 94 85.1
arahy.Tifrunner.gnm1.ann1.RBN82M Arachis hypogaea HOM05D006252 ORTHO05D007909 5.3e-33 145.2 103 77.7
Actinidia24149 Actinidia chinensis HOM05D006252 ORTHO05D007909 2.3e-28 129.8 102 70.6
Haze_24362 Corylus avellana HOM05D006252 ORTHO05D007909 8.7e-28 127.9 92 76.1
arahy.Tifrunner.gnm1.ann1.EI3IVH Arachis hypogaea HOM05D006252 ORTHO05D007909 7.4e-27 124.8 90 76.7
SEGI_37172 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 1.2e-24 117.5 86 66.3
Cre12.g556050 Chlamydomonas reinhardtii HOM05D006252 ORTHO05D007909 1.3e-23 114.0 165 38.2
arahy.Tifrunner.gnm1.ann1.8D185T Arachis hypogaea HOM05D006252 ORTHO05D005826 2.7e-21 106.3 71 78.9
MCO03G269 Micromonas commoda HOM05D006252 ORTHO05D007909 8.7e-20 101.3 167 35.9
Oeu007731.1 Olea europaea HOM05D006252 ORTHO05D007909 1.9e-19 100.1 95 63.2
PRCOL_00001763 Prasinoderma coloniale HOM05D006252 ORTHO05D007909 2.0e-16 90.1 162 31.5
SEGI_26717 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 3.4e-16 89.4 72 61.1
arahy.Tifrunner.gnm1.ann1.KIT0HG Arachis hypogaea HOM05D006252 ORTHO05D007909 1.9e-14 83.6 88 55.7
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 1.1e-11 74.3 156 35.3
MELO3C029084.2 Cucumis melo HOM05D006252 ORTHO05D007909 2.0e-11 73.6 43 81.4
Zm00001eb258210 Zea mays HOM05D000274 ORTHO05D006772 3.1e-09 66.2 91 40.7
arahy.Tifrunner.gnm1.ann1.TR51Z4 Arachis hypogaea HOM05D006252 ORTHO05D007909 2.0e-08 63.5 38 76.3


User provided reference genes

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