Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0056551 Rosa chinensis HOM05D007274 ORTHO05D009194 3.6e-32 141.0 70 100.0
FAN21G0952 Fragaria x ananassa HOM05D007274 ORTHO05D009194 6.1e-32 140.2 70 98.6
FAN16G2799 Fragaria x ananassa HOM05D007274 ORTHO05D009194 1.0e-31 139.4 69 97.1
FvH4_3g30550 Fragaria vesca HOM05D007274 ORTHO05D009194 1.4e-31 139.0 70 97.1
FAN11G1565 Fragaria x ananassa HOM05D007274 ORTHO05D009194 1.4e-31 139.0 70 97.1
Aa31LG1G12850 Aethionema arabicum HOM05D007274 ORTHO05D009194 2.2e-29 131.7 70 91.4
THA.LOC109116051 Tarenaya hassleriana HOM05D007274 ORTHO05D009194 3.7e-29 131.0 70 92.9
BcaB05g22677 Brassica carinata HOM05D007274 ORTHO05D009194 4.8e-29 130.6 70 92.9
BcaB08g36400 Brassica carinata HOM05D007274 ORTHO05D009194 4.8e-29 130.6 70 92.9
BcaC04g19606 Brassica carinata HOM05D007274 ORTHO05D009194 4.8e-29 130.6 70 92.9
C09p53770 Brassica napus HOM05D007274 ORTHO05D009194 4.8e-29 130.6 70 92.9
BolC9t58252H Brassica oleracea HOM05D007274 ORTHO05D009194 4.8e-29 130.6 70 92.9
CARHR190660 Cardamine hirsuta HOM05D007274 ORTHO05D009194 4.8e-29 130.6 70 92.9
Thhalv10015213m.g Eutrema salsugineum HOM05D007274 ORTHO05D009194 4.8e-29 130.6 70 92.9
Sp6g22530 Schrenkiella parvula HOM05D007274 ORTHO05D009194 4.8e-29 130.6 70 92.9
AT5G22875 Arabidopsis thaliana HOM05D007274 ORTHO05D009194 1.4e-28 129.0 70 90.0
AL6G34010 Arabidopsis lyrata HOM05D007274 ORTHO05D009194 1.8e-28 128.6 70 90.0
MD03G1128500 Malus domestica HOM05D007274 ORTHO05D009194 1.8e-28 128.6 70 90.0
A10p18160 Brassica napus HOM05D007274 ORTHO05D009194 3.1e-28 127.9 70 91.4
BraA10t43891Z Brassica rapa HOM05D007274 ORTHO05D009194 3.1e-28 127.9 70 91.4
CANSAT64G0704 Cannabis sativa HOM05D007274 ORTHO05D009194 4.1e-28 127.5 69 89.9
Carub.0006s2065 Capsella rubella HOM05D007274 ORTHO05D009194 4.1e-28 127.5 70 91.4
Haze_23527 Corylus avellana HOM05D007274 ORTHO05D009194 1.5e-27 125.6 70 85.7
Prupe.6G113700 Prunus persica HOM05D007274 ORTHO05D009194 1.5e-27 125.6 70 88.6
Cfa010139 Carpinus fangiana HOM05D007274 ORTHO05D009194 3.4e-27 124.4 70 87.1
Psat7g223680 Pisum sativum HOM05D007274 ORTHO05D009194 3.4e-27 124.4 70 85.7
TPR.G36741 Trifolium pratense HOM05D007274 ORTHO05D009194 7.7e-27 123.2 70 84.3
Ciclev10029644m.g Citrus clementina HOM05D007274 ORTHO05D009194 1.7e-26 122.1 71 87.3
Lalb_Chr19g0136881 Lupinus albus HOM05D007274 ORTHO05D009194 1.7e-26 122.1 70 82.9
Medtr4g057190 Medicago truncatula HOM05D007274 ORTHO05D009194 5.0e-26 120.6 69 81.2
QL01p014890 Quercus lobata HOM05D007274 ORTHO05D009194 5.0e-26 120.6 68 83.8
Sed0003405 Sechium edule HOM05D007274 ORTHO05D009194 5.0e-26 120.6 70 84.3
Ca_10763_v3 Cicer arietinum L. HOM05D007274 ORTHO05D009194 6.5e-26 120.2 70 82.9
ClCG02G021670 Citrullus lanatus HOM05D007274 ORTHO05D009194 8.5e-26 119.8 70 84.3
Thecc.09G297800 Theobroma cacao HOM05D007274 ORTHO05D009194 8.5e-26 119.8 70 80.0
Lj3g0015703 Lotus japonicus HOM05D007274 ORTHO05D009194 1.1e-25 119.4 70 82.9
Cpa.g.sc47.5 Carica papaya HOM05D007274 ORTHO05D009194 1.4e-25 119.0 70 84.3
CiPaw.14G106900 Carya illinoinensis HOM05D007274 ORTHO05D009194 2.5e-25 118.2 70 81.4
Oeu007727.1 Olea europaea HOM05D007274 ORTHO05D009194 4.2e-25 117.5 72 83.3
vmacro03251 Vaccinium macrocarpon HOM05D007274 ORTHO05D009194 9.4e-25 116.3 73 80.8
Solyc11g066450.2 Solanum lycopersicum HOM05D007274 ORTHO05D009194 1.2e-24 115.9 73 79.5
Sopen11g026200 Solanum pennellii HOM05D007274 ORTHO05D009194 1.2e-24 115.9 73 79.5
PGSC0003DMG401000458 Solanum tuberosum HOM05D007274 ORTHO05D009194 1.2e-24 115.9 73 79.5
arahy.Tifrunner.gnm1.ann1.BZT54Z Arachis hypogaea HOM05D007274 ORTHO05D009194 1.6e-24 115.5 70 82.9
arahy.Tifrunner.gnm1.ann1.F7FWRZ Arachis hypogaea HOM05D007274 ORTHO05D009194 1.6e-24 115.5 70 82.9
AUR62024013 Chenopodium quinoa HOM05D007274 ORTHO05D009194 1.6e-24 115.5 72 81.9
Rhsim13G0101500 Rhododendron simsii HOM05D007274 ORTHO05D009194 1.6e-24 115.5 73 79.5
AUR62041328 Chenopodium quinoa HOM05D007274 ORTHO05D009194 6.1e-24 113.6 72 80.6
Peaxi162Scf00983g00003 Petunia axillaris HOM05D007274 ORTHO05D009194 6.1e-24 113.6 72 76.4
Hund00829 Selenicereus undatus HOM05D007274 ORTHO05D009194 6.1e-24 113.6 72 80.6
Sc06g0006140 Simmondsia chinensis HOM05D007274 ORTHO05D009194 6.1e-24 113.6 72 77.8
Manes.04G012400 Manihot esculenta HOM05D007274 ORTHO05D009194 7.9e-24 113.2 71 80.3
Rhsim13G0101200 Rhododendron simsii HOM05D007274 ORTHO05D009194 7.9e-24 113.2 73 78.1
Actinidia07190 Actinidia chinensis HOM05D007274 ORTHO05D009194 1.0e-23 112.8 73 78.1
Ah.01g004810 Amaranthus hybridus HOM05D007274 ORTHO05D009194 1.4e-23 112.5 72 80.6
CSS0018211 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.4e-23 112.5 71 80.3
Haze_23532 Corylus avellana HOM05D007274 ORTHO05D009194 1.4e-23 112.5 70 78.6
Atru.chr3.3502 Acer truncatum HOM05D007274 ORTHO05D009194 1.8e-23 112.1 65 87.7
ECA248G0925 Erigeron canadensis HOM05D007274 ORTHO05D009194 1.8e-23 112.1 72 79.2
PGR102G1958 Punica granatum HOM05D007274 ORTHO05D009194 2.3e-23 111.7 71 76.1
DCAR_022681 Daucus carota HOM05D007274 ORTHO05D009194 3.0e-23 111.3 72 77.8
Nitab4.5_0009628g0020 Nicotiana tabacum HOM05D007274 ORTHO05D009194 3.0e-23 111.3 73 76.7
Glyma.12G082200 Glycine max HOM05D007274 ORTHO05D009194 3.9e-23 110.9 62 87.1
Sabra04G0148000 Salix brachista HOM05D007274 ORTHO05D009194 3.9e-23 110.9 71 78.9
Cc01_g10210 Coffea canephora HOM05D007274 ORTHO05D009194 5.1e-23 110.5 73 75.3
Lsat_1_v5_gn_1_64881 Lactuca sativa HOM05D007274 ORTHO05D009194 5.1e-23 110.5 73 78.1
CAN.G546.54 Capsicum annuum HOM05D007274 ORTHO05D009194 6.7e-23 110.2 73 76.7
Duzib150G1296 Durio zibethinus HOM05D007274 ORTHO05D009194 6.7e-23 110.2 70 77.1
Duzib150G1526 Durio zibethinus HOM05D007274 ORTHO05D009194 6.7e-23 110.2 70 77.1
Nitab4.5_0000173g0170 Nicotiana tabacum HOM05D007274 ORTHO05D009194 6.7e-23 110.2 73 75.3
SalBow6G3121 Salvia bowleyana HOM05D007274 ORTHO05D009194 6.7e-23 110.2 72 79.2
Potri.004G217300 Populus trichocarpa HOM05D007274 ORTHO05D009194 8.8e-23 109.8 71 77.5
COL.COLO4_19207 Corchorus olitorius HOM05D007274 ORTHO05D009194 1.1e-22 109.4 70 77.1
Migut.D02299 Erythranthe guttata HOM05D007274 ORTHO05D009194 1.1e-22 109.4 72 76.4
PSO384G1249 Papaver somniferum HOM05D007274 ORTHO05D009194 1.1e-22 109.4 74 73.0
Haze_08394 Corylus avellana HOM05D007274 ORTHO05D009194 1.5e-22 109.0 81 67.9
Gohir.A09G064000 Gossypium hirsutum HOM05D007274 ORTHO05D009194 1.5e-22 109.0 70 77.1
Gohir.D09G062900 Gossypium hirsutum HOM05D007274 ORTHO05D009194 1.5e-22 109.0 70 77.1
Gorai.006G077700 Gossypium raimondii HOM05D007274 ORTHO05D009194 1.5e-22 109.0 70 77.1
EL10Ac9g21016 Beta vulgaris HOM05D007274 ORTHO05D009194 2.0e-22 108.6 70 77.1
HanXRQChr11g0346021 Helianthus annuus HOM05D007274 ORTHO05D009194 2.0e-22 108.6 72 76.4
CSS0039770 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.6e-22 108.2 73 75.3
SGA_v2.0_scaffold277G46704 Striga asiatica HOM05D007274 ORTHO05D009194 2.6e-22 108.2 72 75.0
Phvul.005G069100 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 3.3e-22 107.8 62 83.9
Phvul.011G086800 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 3.3e-22 107.8 62 83.9
C02p11370 Brassica napus HOM05D007274 ORTHO05D009194 5.7e-22 107.1 64 87.5
MBI04_g08417_MAGBIO Magnolia biondii HOM05D007274 ORTHO05D009194 9.7e-22 106.3 69 72.5
BNapus_Darmor_BZH_scaffold_38p00270 Brassica napus HOM05D007274 ORTHO05D009194 1.7e-21 105.5 64 85.9
BraA02t05697Z Brassica rapa HOM05D007274 ORTHO05D009194 4.8e-21 104.0 64 85.9
CSS0045495 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 6.3e-21 103.6 73 72.6
Nn2g13873 Nelumbo nucifera HOM05D007274 ORTHO05D009194 6.3e-21 103.6 65 75.4
Os04g0165500 Oryza sativa ssp. japonica HOM05D007274 ORTHO05D009194 6.3e-21 103.6 71 69.0
CSS0014818 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 8.2e-21 103.2 73 72.6
HPP92_002407 Vanilla planifolia HOM05D007274 ORTHO05D009194 1.4e-20 102.4 71 69.0
unitig_899.g15364 Utricularia gibba HOM05D000376 ORTHO05D000237 1.8e-20 102.1 69 73.9
Glyma.11G192200 Glycine max HOM05D007274 ORTHO05D009194 3.1e-20 101.3 61 80.3
Aqoxy1G01060 Aquilegia oxysepala HOM05D007274 ORTHO05D009194 2.0e-19 98.6 65 70.8
Nn5g27554 Nelumbo nucifera HOM05D007274 ORTHO05D009194 1.3e-18 95.9 64 71.9
GSVIVG01031456001 Vitis vinifera HOM05D007274 ORTHO05D009194 2.2e-18 95.1 68 66.2
ATR0043G009 Amborella trichopoda HOM05D007274 ORTHO05D009194 2.5e-17 91.7 63 68.3
CDE04G2982 Ceratophyllum demersum HOM05D007274 ORTHO05D009194 1.2e-16 89.4 64 67.2
MD11G1149300 Malus domestica HOM05D007274 ORTHO05D009194 8.0e-16 86.7 50 86.0
Mapoly0009s0144 Marchantia polymorpha HOM05D007274 ORTHO05D009194 2.3e-15 85.1 60 63.3
SEGI_23633 Sequoiadendron giganteum HOM05D007274 ORTHO05D009194 5.2e-15 84.0 58 72.4
Pp3c6_6370 Physcomitrium patens HOM05D007274 ORTHO05D009194 2.8e-13 78.2 59 66.1
Lsat_1_v5_gn_1_64921 Lactuca sativa HOM05D007274 ORTHO05D009194 2.4e-12 75.1 65 64.6
SHI06197 Sapria himalayana HOM05D005377 ORTHO05D003034 1.5e-09 65.9 56 62.5
TAR369G0919 Trochodendron aralioides HOM05D007274 ORTHO05D009194 9.4e-09 63.2 42 71.4
BolC2t07210H Brassica oleracea HOM05D007274 ORTHO05D009194 3.3e-06 54.7 31 93.5


User provided reference genes

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