Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0055941 Rosa chinensis HOM05D006347 ORTHO05D007835 1.9e-295 1018.5 526 100.0
FvH4_3g29990 Fragaria vesca HOM05D006347 ORTHO05D007835 9.9e-244 846.7 526 85.2
FAN21G3835 Fragaria x ananassa HOM05D006347 ORTHO05D007835 8.6e-240 833.6 555 80.5
FAN11G3746 Fragaria x ananassa HOM05D006347 ORTHO05D007835 4.7e-238 827.8 544 81.8
FAN25G1668 Fragaria x ananassa HOM05D006347 ORTHO05D007835 6.2e-238 827.4 555 80.2
Prupe.6G116300 Prunus persica HOM05D006347 ORTHO05D007835 2.8e-206 722.2 540 72.8
MD11G1153600 Malus domestica HOM05D006347 ORTHO05D007835 6.7e-200 701.0 526 72.6
QL01p014117 Quercus lobata HOM05D006347 ORTHO05D007835 1.8e-173 613.2 535 64.7
CiPaw.14G105000 Carya illinoinensis HOM05D006347 ORTHO05D007835 2.8e-166 589.3 536 61.6
Dinv29404 Davidia involucrata HOM05D006347 ORTHO05D007835 3.2e-162 575.9 507 62.5
Manes.04G010900 Manihot esculenta HOM05D006347 ORTHO05D007835 2.6e-159 566.2 518 60.8
Thecc.09G294500 Theobroma cacao HOM05D006347 ORTHO05D007835 9.8e-159 564.3 505 61.8
GSVIVG01031423001 Vitis vinifera HOM05D006347 ORTHO05D007835 8.3e-158 561.2 536 58.6
Gohir.A07G106500 Gossypium hirsutum HOM05D006347 ORTHO05D007835 7.0e-157 558.1 525 59.8
Gorai.001G118600 Gossypium raimondii HOM05D006347 ORTHO05D007835 9.1e-157 557.8 526 59.7
Gohir.D07G110400 Gossypium hirsutum HOM05D006347 ORTHO05D007835 3.8e-155 552.4 527 59.8
Glyma.13G320700 Glycine max HOM05D006347 ORTHO05D007835 3.0e-152 542.7 523 58.3
Sabra09G0119700 Salix brachista HOM05D006347 ORTHO05D007835 1.5e-151 540.4 540 57.6
Ciclev10028160m.g Citrus clementina HOM05D006347 ORTHO05D007835 2.0e-151 540.0 512 59.0
Potri.009G151100 Populus trichocarpa HOM05D006347 ORTHO05D007835 5.7e-151 538.5 536 58.0
Duzib168G1158 Durio zibethinus HOM05D006347 ORTHO05D007835 1.3e-150 537.3 523 57.7
Atru.chr3.3422 Acer truncatum HOM05D006347 ORTHO05D007835 3.7e-150 535.8 459 65.4
Lalb_Chr22g0350521 Lupinus albus HOM05D006347 ORTHO05D007835 1.4e-149 533.9 513 58.7
VMungo1080G1358 Vigna mungo HOM05D006347 ORTHO05D007835 1.8e-149 533.5 511 58.3
arahy.Tifrunner.gnm1.ann1.PRK8FW Arachis hypogaea HOM05D006347 ORTHO05D007835 1.9e-146 523.5 526 56.1
Lj3g0008152 Lotus japonicus HOM05D006347 ORTHO05D007835 2.5e-146 523.1 505 58.0
Psat5g253920 Pisum sativum HOM05D006347 ORTHO05D007835 2.5e-146 523.1 517 57.1
CsaV3_6G014560 Cucumis sativus L. HOM05D006347 ORTHO05D007835 3.3e-146 522.7 534 55.6
Cfa021537 Carpinus fangiana HOM05D006347 ORTHO05D007835 9.5e-146 521.2 545 59.1
Medtr2g084580 Medicago truncatula HOM05D006347 ORTHO05D007835 9.5e-146 521.2 508 57.1
CANSAT56G1452 Cannabis sativa HOM05D006347 ORTHO05D007835 2.8e-145 519.6 501 58.7
TPR.G32394 Trifolium pratense HOM05D006347 ORTHO05D007835 3.4e-143 512.7 508 56.7
Hma1.2p1_0884F.1_g232450 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 3.7e-142 509.2 495 57.8
Sed0011208 Sechium edule HOM05D006347 ORTHO05D007835 8.3e-142 508.1 516 56.4
TWI31G1233 Tripterygium wilfordii HOM05D006347 ORTHO05D007835 4.1e-141 505.8 517 56.3
MELO3C021469.2 Cucumis melo HOM05D006347 ORTHO05D007835 1.3e-139 500.7 577 52.2
Sc12g0003850 Simmondsia chinensis HOM05D006347 ORTHO05D007835 5.0e-139 498.8 515 54.2
ClCG02G021770 Citrullus lanatus HOM05D006347 ORTHO05D007835 9.5e-138 494.6 543 54.0
CAN.G1432.26 Capsicum annuum HOM05D006347 ORTHO05D007835 6.2e-137 491.9 505 54.7
Actinidia24168 Actinidia chinensis HOM05D006347 ORTHO05D007835 2.3e-136 490.0 468 59.0
Eucgr.J00411 Eucalyptus grandis HOM05D006347 ORTHO05D007835 1.3e-134 484.2 531 54.0
Phvul.005G128700 Phaseolus vulgaris HOM05D006347 ORTHO05D007835 2.9e-134 483.0 405 62.2
Lsat_1_v5_gn_2_96801 Lactuca sativa HOM05D006347 ORTHO05D007835 8.3e-134 481.5 509 53.2
vmacro03233 Vaccinium macrocarpon HOM05D006347 ORTHO05D007835 9.2e-133 478.0 557 52.2
DCAR_015490 Daucus carota HOM05D006347 ORTHO05D007835 1.2e-132 477.6 526 51.9
CARHR190750 Cardamine hirsuta HOM05D006347 ORTHO05D007835 6.0e-132 475.3 515 51.5
Cc01_g10020 Coffea canephora HOM05D006347 ORTHO05D007835 1.7e-131 473.8 521 52.8
Lj2A998T24 Lonicera japonica HOM05D006347 ORTHO05D007835 5.1e-131 472.2 520 53.8
PGR119G2351 Punica granatum HOM05D006347 ORTHO05D007835 5.1e-131 472.2 513 54.6
AUR62031770 Chenopodium quinoa HOM05D006347 ORTHO05D007835 7.3e-130 468.4 539 49.5
THA.LOC104810888 Tarenaya hassleriana HOM05D006347 ORTHO05D007835 7.3e-130 468.4 495 52.3
AT5G22820 Arabidopsis thaliana HOM05D006347 ORTHO05D007835 9.5e-130 468.0 497 52.1
Nitab4.5_0005038g0010 Nicotiana tabacum HOM05D006347 ORTHO05D007835 8.1e-129 464.9 461 55.5
Nn2g13927 Nelumbo nucifera HOM05D006347 ORTHO05D007835 1.1e-128 464.5 467 56.1
arahy.Tifrunner.gnm1.ann1.9T0HEQ Arachis hypogaea HOM05D006347 ORTHO05D007835 1.4e-128 464.2 581 48.9
Haze_23473 Corylus avellana HOM05D006347 ORTHO05D007835 1.4e-128 464.2 516 55.4
Carub.0006s2054 Capsella rubella HOM05D006347 ORTHO05D007835 1.5e-127 460.7 502 52.2
ECA238G1908 Erigeron canadensis HOM05D006347 ORTHO05D007835 1.5e-127 460.7 522 50.6
Sopen06g031100 Solanum pennellii HOM05D006347 ORTHO05D007835 2.0e-127 460.3 524 51.7
PGSC0003DMG400007153 Solanum tuberosum HOM05D006347 ORTHO05D007835 2.0e-127 460.3 525 51.8
Ca_01691_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 5.8e-127 458.8 484 54.1
Ca_30937_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 5.8e-127 458.8 484 54.1
Thhalv10013199m.g Eutrema salsugineum HOM05D006347 ORTHO05D007835 5.8e-127 458.8 539 49.2
BcaB05g22687 Brassica carinata HOM05D006347 ORTHO05D007835 7.6e-127 458.4 523 49.3
AL6G33930 Arabidopsis lyrata HOM05D006347 ORTHO05D007835 1.7e-126 457.2 505 52.3
MSTRG.18715 Avicennia marina HOM05D006347 ORTHO05D007835 1.4e-125 454.1 512 52.1
Haze_23489 Corylus avellana HOM05D006347 ORTHO05D007835 1.4e-125 454.1 408 62.3
Sp6g22600 Schrenkiella parvula HOM05D006347 ORTHO05D007835 1.4e-125 454.1 506 51.2
Peaxi162Scf00157g00213 Petunia axillaris HOM05D006347 ORTHO05D007835 4.1e-125 452.6 535 48.8
EL10Ac9g21046 Beta vulgaris HOM05D006347 ORTHO05D007835 1.6e-124 450.7 531 48.2
SalBow6G0094 Salvia bowleyana HOM05D006347 ORTHO05D007835 5.6e-122 442.2 517 50.3
Aqoxy1G01013 Aquilegia oxysepala HOM05D006347 ORTHO05D007835 7.3e-122 441.8 539 48.2
AUR62023970 Chenopodium quinoa HOM05D006347 ORTHO05D007835 4.4e-119 432.6 465 53.3
BcaC03g13920 Brassica carinata HOM05D006347 ORTHO05D007835 5.8e-119 432.2 522 48.3
C02p11300 Brassica napus HOM05D006347 ORTHO05D007835 9.9e-119 431.4 501 51.1
HanXRQChr07g0197561 Helianthus annuus HOM05D006347 ORTHO05D007835 9.9e-119 431.4 467 52.0
Solyc06g074690.3 Solanum lycopersicum HOM05D006347 ORTHO05D007835 1.3e-118 431.0 586 46.2
COL.COLO4_19257 Corchorus olitorius HOM05D006347 ORTHO05D007835 1.7e-118 430.6 564 49.8
BNapus_Darmor_BZH_scaffold_38p00360 Brassica napus HOM05D006347 ORTHO05D007835 7.1e-117 425.2 524 49.0
Migut.D02321 Erythranthe guttata HOM05D006347 ORTHO05D007835 9.3e-117 424.9 480 51.7
SGA_v2.0_scaffold27G11587 Striga asiatica HOM05D006347 ORTHO05D007835 1.3e-115 421.0 473 49.9
BolC2t07198H Brassica oleracea HOM05D006347 ORTHO05D007835 8.7e-115 418.3 529 47.6
PSO063G2566 Papaver somniferum HOM05D006347 ORTHO05D007835 2.5e-114 416.8 515 46.4
Nitab4.5_0003470g0080 Nicotiana tabacum HOM05D006347 ORTHO05D007835 3.3e-114 416.4 497 48.9
BraA02t05690Z Brassica rapa HOM05D006347 ORTHO05D007835 1.6e-113 414.1 528 47.9
Hma1.2p1_0884F.1_g232440 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 3.1e-112 409.8 451 53.4
Aa31LG1G12890 Aethionema arabicum HOM05D006347 ORTHO05D007835 8.4e-110 401.7 534 46.8
ATR0665G610 Amborella trichopoda HOM05D006347 ORTHO05D007835 1.8e-104 384.0 509 45.2
TAR633G1474 Trochodendron aralioides HOM05D006347 ORTHO05D007835 1.5e-103 380.9 355 62.0
Rhsim13G0103600 Rhododendron simsii HOM05D006347 ORTHO05D007835 2.9e-102 376.7 378 56.6
PSO339G5358 Papaver somniferum HOM05D006347 ORTHO05D007835 4.6e-100 369.4 433 48.3
Haze_23492 Corylus avellana HOM05D006347 ORTHO05D007835 7.9e-100 368.6 412 54.4
unitig_899.g14960 Utricularia gibba HOM05D006347 ORTHO05D007835 5.3e-96 355.9 567 40.9
Ah.01g016170 Amaranthus hybridus HOM05D006347 ORTHO05D007835 7.2e-85 318.9 392 48.7
HPP92_014171 Vanilla planifolia HOM05D006347 ORTHO05D007835 1.0e-83 315.1 491 41.3
HPP92_014151 Vanilla planifolia HOM05D006347 ORTHO05D007835 6.7e-83 312.4 491 41.1
Peaxi162Scf00755g00310 Petunia axillaris HOM05D006347 ORTHO05D007835 5.3e-80 302.8 432 42.8
FAN16G0411 Fragaria x ananassa HOM05D006347 ORTHO05D007835 1.6e-76 291.2 189 81.0
Os03g0684100 Oryza sativa ssp. japonica HOM05D006347 ORTHO05D007835 6.1e-76 289.3 499 39.1
Glyma.12G180067 Glycine max HOM05D006347 ORTHO05D007835 9.1e-72 275.4 189 72.5
AagrBONN_evm.TU.Sc2ySwM_117.1516 Anthoceros agrestis HOM05D006347 ORTHO05D007835 3.3e-66 256.9 388 40.2
Pp3c4_24670 Physcomitrium patens HOM05D006347 ORTHO05D007835 1.8e-64 251.1 574 32.6
Zm00001eb053190 Zea mays HOM05D006347 ORTHO05D007835 2.9e-62 243.8 349 42.1
Mapoly0004s0056 Marchantia polymorpha HOM05D006347 ORTHO05D007835 1.6e-60 238.0 376 37.8
CBR_g54933 Chara braunii HOM05D006347 ORTHO05D007835 2.6e-58 230.7 323 40.9
Haze_23495 Corylus avellana HOM05D006347 ORTHO05D007835 3.1e-56 223.8 262 52.3
Cpa.g.sc47.36 Carica papaya HOM05D006347 ORTHO05D007835 9.8e-50 202.2 214 54.2
Glyma.12G180133 Glycine max HOM05D006347 ORTHO05D007835 8.3e-49 199.1 193 56.5
Haze_23480 Corylus avellana HOM05D006347 ORTHO05D007835 8.0e-44 182.6 201 54.2
Ah.01g016190 Amaranthus hybridus HOM05D006347 ORTHO05D007835 1.3e-41 175.3 234 48.3
CSS0047528 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 4.4e-34 150.2 158 54.4
SMO265G0001 Selaginella moellendorffii HOM05D006347 ORTHO05D007835 5.0e-30 136.7 167 46.1
CDE02G2671 Ceratophyllum demersum HOM05D006347 ORTHO05D007835 2.0e-26 124.8 510 27.3
Hund07723 Selenicereus undatus HOM05D006347 ORTHO05D007835 1.4e-16 92.0 150 43.3
TAR633G2060 Trochodendron aralioides HOM05D006347 ORTHO05D007835 3.2e-16 90.9 96 51.0
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 2.8e-12 77.8 124 40.3
Haze_23483 Corylus avellana HOM05D006347 ORTHO05D007835 3.1e-11 74.3 120 44.2
SEGI_13685 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 4.0e-11 73.9 115 38.3
SEGI_35353 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 2.0e-10 71.6 70 50.0
Actinidia14339 Actinidia chinensis HOM05D006347 ORTHO05D007835 2.2e-09 68.2 37 83.8
Haze_23490 Corylus avellana HOM05D006347 ORTHO05D007835 2.4e-08 64.7 109 45.0
CSS0039987 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 1.6e-07 62.0 52 67.3
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 3.5e-07 60.8 113 35.4
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 6.0e-07 60.1 111 36.9
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 7.8e-07 59.7 111 34.2


User provided reference genes

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