Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0055681 Rosa chinensis HOM05D032875 ORTHO05D035736 1.7e-258 895.6 489 100.0
RcHm_v2.0_Chr5g0023291 Rosa chinensis HOM05D000839 ORTHO05D000664 5.3e-50 203.0 345 39.4
RcHm_v2.0_Chr5g0077241 Rosa chinensis HOM05D000002 ORTHO05D000001 1.2e-22 112.1 97 54.6
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 2.8e-22 110.9 271 32.5
RcHm_v2.0_Chr2g0141981 Rosa chinensis HOM05D000002 ORTHO05D000001 8.0e-22 109.4 157 45.2
RcHm_v2.0_Chr1g0344491 Rosa chinensis HOM05D000002 ORTHO05D000001 1.5e-20 105.1 177 38.4
FvH4_5g38691 Fragaria vesca HOM05D000002 ORTHO05D000001 4.4e-20 103.6 121 47.9
RcHm_v2.0_Chr5g0083071 Rosa chinensis HOM05D000002 ORTHO05D000001 9.8e-20 102.4 119 48.7
RcHm_v2.0_Chr1g0349331 Rosa chinensis HOM05D000002 ORTHO05D000001 6.3e-19 99.8 133 43.6
RcHm_v2.0_Chr1g0337711 Rosa chinensis HOM05D000002 ORTHO05D000001 2.4e-18 97.8 86 53.5
RcHm_v2.0_Chr1g0339131 Rosa chinensis HOM05D000002 ORTHO05D000001 2.4e-18 97.8 154 41.6
RcHm_v2.0_Chr7g0200091 Rosa chinensis HOM05D000002 ORTHO05D000001 4.1e-18 97.1 102 48.0
RcHm_v2.0_Chr1g0337651 Rosa chinensis HOM05D000002 ORTHO05D000001 9.2e-18 95.9 104 48.1
RcHm_v2.0_Chr4g0432071 Rosa chinensis HOM05D014640 ORTHO05D000001 9.2e-18 95.9 129 44.2
RcHm_v2.0_Chr3g0482021 Rosa chinensis HOM05D000002 ORTHO05D000001 2.7e-17 94.4 132 43.2
FvH4_3g07841 Fragaria vesca HOM05D000002 ORTHO05D000001 2.3e-16 91.3 200 35.5
RcHm_v2.0_Chr1g0355351 Rosa chinensis HOM05D000287 ORTHO05D000001 5.0e-16 90.1 141 41.8
FvH4_4g13041 Fragaria vesca HOM05D014640 ORTHO05D000001 1.1e-15 89.0 147 40.8
RcHm_v2.0_Chr5g0004361 Rosa chinensis HOM05D000002 ORTHO05D000001 1.1e-15 89.0 87 50.6
RcHm_v2.0_Chr2g0136201 Rosa chinensis HOM05D000002 ORTHO05D000001 2.5e-15 87.8 171 37.4
RcHm_v2.0_Chr6g0299971 Rosa chinensis HOM05D000002 ORTHO05D000001 3.3e-15 87.4 141 41.1
MD01G1077600 Malus domestica HOM05D009166 ORTHO05D000001 4.3e-15 87.0 86 50.0
MD11G1242500 Malus domestica HOM05D000002 ORTHO05D000001 4.3e-15 87.0 215 34.4
RcHm_v2.0_Chr2g0156571 Rosa chinensis HOM05D000002 ORTHO05D000001 3.6e-14 84.0 139 38.1
RcHm_v2.0_Chr1g0366871 Rosa chinensis HOM05D000062 ORTHO05D000043 4.7e-14 83.6 108 42.6
MD14G1067200 Malus domestica HOM05D000002 ORTHO05D000001 6.1e-14 83.2 96 42.7
RcHm_v2.0_Chr6g0266721 Rosa chinensis HOM05D000002 ORTHO05D000001 6.1e-14 83.2 115 41.7
FvH4_5g05651 Fragaria vesca HOM05D000002 ORTHO05D000001 8.0e-14 82.8 320 25.9
FvH4_7g24921 Fragaria vesca HOM05D013433 ORTHO05D000001 8.0e-14 82.8 228 31.1
RcHm_v2.0_Chr5g0025271 Rosa chinensis HOM05D000002 ORTHO05D000001 8.0e-14 82.8 104 42.3
RcHm_v2.0_Chr2g0174291 Rosa chinensis HOM05D000002 ORTHO05D000001 1.0e-13 82.4 86 47.7
MD17G1109500 Malus domestica HOM05D000002 ORTHO05D000001 1.8e-13 81.6 140 37.1
FvH4_7g10872 Fragaria vesca HOM05D013433 ORTHO05D000001 3.0e-13 80.9 132 40.2
MD11G1108900 Malus domestica HOM05D009166 ORTHO05D000001 4.0e-13 80.5 109 43.1
RcHm_v2.0_Chr2g0112811 Rosa chinensis HOM05D000002 ORTHO05D000001 8.9e-13 79.3 106 37.7
MD08G1157400 Malus domestica HOM05D025337 ORTHO05D000001 2.6e-12 77.8 135 36.3
FvH4_1g26621 Fragaria vesca HOM05D013433 ORTHO05D000001 5.7e-12 76.6 222 32.4
FvH4_4g27903 Fragaria vesca HOM05D009166 ORTHO05D045534 5.7e-12 76.6 116 39.7
Dinv08503 Davidia involucrata HOM05D000002 ORTHO05D000001 9.8e-12 75.9 130 36.9
MD03G1059500 Malus domestica HOM05D000002 ORTHO05D000001 2.2e-11 74.7 139 36.7
RcHm_v2.0_Chr3g0448481 Rosa chinensis HOM05D009166 ORTHO05D000001 4.9e-11 73.6 116 40.5
FvH4_3g04191 Fragaria vesca HOM05D009166 ORTHO05D000001 6.4e-11 73.2 164 36.0
FvH4_3g11482 Fragaria vesca HOM05D033756 ORTHO05D000001 8.3e-11 72.8 200 32.5
RcHm_v2.0_Chr1g0376111 Rosa chinensis HOM05D009166 ORTHO05D000001 8.3e-11 72.8 104 40.4
RcHm_v2.0_Chr2g0111881 Rosa chinensis HOM05D014640 ORTHO05D000001 8.3e-11 72.8 121 33.9
RcHm_v2.0_Chr7g0234441 Rosa chinensis HOM05D013433 ORTHO05D000001 1.1e-10 72.4 188 29.3
FvH4_3g17162 Fragaria vesca HOM05D009166 ORTHO05D000001 1.4e-10 72.0 102 41.2
Prupe.1G091500 Prunus persica HOM05D014640 ORTHO05D000001 1.4e-10 72.0 141 31.9
RcHm_v2.0_Chr1g0366991 Rosa chinensis HOM05D009166 ORTHO05D000001 1.4e-10 72.0 103 41.7
FvH4_6g38191 Fragaria vesca HOM05D021504 ORTHO05D025385 3.2e-10 70.9 100 42.0
RcHm_v2.0_Chr1g0334441 Rosa chinensis HOM05D009166 ORTHO05D000001 3.2e-10 70.9 104 40.4
Hma1.2p1_0718F.1_g208440 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.4e-10 70.1 82 45.1
FvH4_3g44242 Fragaria vesca HOM05D032875 ORTHO05D035736 7.0e-10 69.7 156 35.9
RcHm_v2.0_Chr3g0448951 Rosa chinensis HOM05D016059 ORTHO05D025540 7.0e-10 69.7 103 40.8
RcHm_v2.0_Chr2g0117291 Rosa chinensis HOM05D010729 ORTHO05D000001 9.2e-10 69.3 143 35.0
FvH4_4g24051 Fragaria vesca HOM05D000002 ORTHO05D000001 1.2e-09 68.9 146 34.9
RcHm_v2.0_Chr5g0058511 Rosa chinensis HOM05D009166 ORTHO05D000001 1.6e-09 68.6 122 34.4
RcHm_v2.0_Chr5g0012631 Rosa chinensis HOM05D013433 ORTHO05D000001 2.0e-09 68.2 78 44.9
RcHm_v2.0_Chr5g0022021 Rosa chinensis HOM05D000002 ORTHO05D000001 2.0e-09 68.2 395 26.6
RcHm_v2.0_Chr7g0178931 Rosa chinensis HOM05D000002 ORTHO05D000001 2.0e-09 68.2 64 45.3
FvH4_2g06411 Fragaria vesca HOM05D000002 ORTHO05D000001 2.7e-09 67.8 102 39.2
CSS0045443 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.5e-09 67.4 115 35.7
CSS0021283 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.9e-09 66.6 143 31.5
RcHm_v2.0_Chr2g0119341 Rosa chinensis HOM05D000002 ORTHO05D000001 7.8e-09 66.2 205 28.8
CSS0025666 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-08 65.9 79 39.2
QL05p006955 Quercus lobata HOM05D026028 ORTHO05D000001 1.0e-08 65.9 89 36.0
CSS0050444 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.0e-08 64.3 140 29.3
RcHm_v2.0_Chr4g0431731 Rosa chinensis HOM05D009166 ORTHO05D000001 3.0e-08 64.3 169 29.6
RcHm_v2.0_Chr1g0337331 Rosa chinensis HOM05D032875 ORTHO05D035736 3.9e-08 63.9 86 50.0
RcHm_v2.0_Chr4g0436951 Rosa chinensis HOM05D000002 ORTHO05D000001 3.9e-08 63.9 439 24.4
RcHm_v2.0_Chr2g0159441 Rosa chinensis HOM05D000002 ORTHO05D000001 5.0e-08 63.5 140 32.9
CSS0021297 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.6e-08 63.2 141 34.0
CSS0037188 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.6e-08 63.2 110 28.2
FvH4_4g26452 Fragaria vesca HOM05D009166 ORTHO05D000001 6.6e-08 63.2 78 41.0
RcHm_v2.0_Chr5g0017791 Rosa chinensis HOM05D016059 ORTHO05D000001 6.6e-08 63.2 210 32.9
CSS0021451 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-07 62.0 236 28.8
Dinv03566 Davidia involucrata HOM05D013570 ORTHO05D000001 1.5e-07 62.0 112 36.6
CSS0047136 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-07 61.6 98 33.7
MD04G1101800 Malus domestica HOM05D009166 ORTHO05D000001 1.9e-07 61.6 52 51.9
QL08p005220 Quercus lobata HOM05D000002 ORTHO05D000001 2.5e-07 61.2 87 37.9
CSS0011950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.3e-07 60.5 109 31.2
RcHm_v2.0_Chr4g0422781 Rosa chinensis HOM05D014640 ORTHO05D000001 4.3e-07 60.5 110 32.7
CSS0045631 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.6e-07 60.1 127 31.5
Migut.J01067 Erythranthe guttata HOM05D000002 ORTHO05D000001 5.6e-07 60.1 116 30.2
MD06G1136100 Malus domestica HOM05D009166 ORTHO05D000001 5.6e-07 60.1 86 39.5
FvH4_5g36481 Fragaria vesca HOM05D013433 ORTHO05D000001 7.3e-07 59.7 181 30.4
RcHm_v2.0_Chr7g0206111 Rosa chinensis HOM05D009166 ORTHO05D000001 7.3e-07 59.7 133 33.1
Migut.E01000 Erythranthe guttata HOM05D000002 ORTHO05D000001 9.5e-07 59.3 120 31.7
CSS0014384 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-06 58.9 146 29.5
Migut.E01660 Erythranthe guttata HOM05D000002 ORTHO05D000001 1.2e-06 58.9 103 33.0
Solyc12g038100.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 1.6e-06 58.5 129 30.2
CSS0020274 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-06 58.2 118 32.2
CsaV3_7G000640 Cucumis sativus L. HOM05D000002 ORTHO05D000001 4.7e-06 57.0 148 31.1
Migut.C00657 Erythranthe guttata HOM05D000002 ORTHO05D000001 4.7e-06 57.0 99 34.3
MELO3C013392.2 Cucumis melo HOM05D000002 ORTHO05D000001 6.2e-06 56.6 149 30.9
FvH4_1g15351 Fragaria vesca HOM05D000002 ORTHO05D000001 6.2e-06 56.6 315 27.6
CSS0031686 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.0e-06 56.2 142 27.5
vmacro03720 Vaccinium macrocarpon HOM05D000002 ORTHO05D000001 8.0e-06 56.2 141 31.2


User provided reference genes

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