Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 1.1e-84 316.6 159 100.0
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 7.0e-76 287.3 160 91.2
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 9.1e-76 287.0 160 90.6
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.2e-75 286.6 160 89.4
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 2.6e-75 285.4 160 89.4
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 4.5e-75 284.6 160 91.2
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 6.5e-74 280.8 160 87.5
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 6.5e-74 280.8 160 87.5
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.1e-73 280.0 160 86.9
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 3.7e-69 265.0 152 90.1
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 1.0e-58 230.3 163 71.8
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.3e-57 225.3 162 71.0
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 4.2e-57 224.9 163 69.9
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.6e-56 221.9 164 73.8
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 1.0e-55 220.3 164 73.2
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 5.2e-55 218.0 162 69.8
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 5.2e-55 218.0 163 68.7
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 6.8e-55 217.6 166 71.7
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 6.8e-55 217.6 164 68.9
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 1.2e-54 216.9 163 67.5
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 3.4e-54 215.3 165 70.3
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 7.5e-54 214.2 164 67.1
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 7.5e-54 214.2 164 70.1
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 9.8e-54 213.8 164 70.7
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 9.8e-54 213.8 162 69.1
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 1.3e-53 213.4 158 68.4
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 2.9e-53 212.2 163 67.5
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 3.7e-53 211.8 163 68.7
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 3.7e-53 211.8 164 69.5
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.7e-53 211.8 163 66.3
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 3.7e-53 211.8 164 67.1
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 3.7e-53 211.8 162 67.9
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 4.9e-53 211.5 160 68.1
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 4.9e-53 211.5 165 66.1
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 6.3e-53 211.1 164 69.5
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 6.3e-53 211.1 167 66.5
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 6.3e-53 211.1 164 68.9
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.4e-52 209.9 162 67.3
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 1.4e-52 209.9 163 65.6
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 2.4e-52 209.1 163 67.5
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 2.4e-52 209.1 163 65.6
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 2.4e-52 209.1 163 65.0
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.2e-52 208.8 163 67.5
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 3.2e-52 208.8 163 67.5
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 5.4e-52 208.0 163 67.5
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 5.4e-52 208.0 164 69.5
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 7.0e-52 207.6 161 67.1
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 7.0e-52 207.6 161 67.1
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 7.0e-52 207.6 163 64.4
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.2e-51 206.8 162 65.4
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 4.6e-51 204.9 162 64.8
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 7.8e-51 204.1 153 66.7
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 7.8e-51 204.1 162 64.8
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.8e-51 204.1 164 65.9
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.0e-50 203.8 162 64.8
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 2.3e-50 202.6 160 67.5
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.9e-50 202.2 165 64.2
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.9e-50 202.2 162 65.4
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 5.0e-50 201.4 160 66.2
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 5.0e-50 201.4 164 63.4
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 6.6e-50 201.1 164 62.8
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 8.6e-50 200.7 163 63.8
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.9e-49 199.5 165 64.2
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 4.3e-49 198.4 164 64.0
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 4.3e-49 198.4 162 63.0
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 7.3e-49 197.6 158 64.6
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 7.3e-49 197.6 164 61.6
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 7.3e-49 197.6 164 62.8
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 9.5e-49 197.2 163 61.3
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 9.5e-49 197.2 166 62.0
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.6e-48 196.4 171 62.6
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 4.7e-48 194.9 164 62.8
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 8.0e-48 194.1 164 61.0
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.0e-47 193.7 164 62.2
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 2.3e-47 192.6 158 62.7
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 4.0e-47 191.8 161 61.5
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 5.2e-47 191.4 164 59.8
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 5.2e-47 191.4 163 58.3
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 2.0e-46 189.5 163 61.3
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 3.4e-46 188.7 164 59.8
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 3.4e-46 188.7 166 60.2
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 3.4e-46 188.7 164 60.4
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 3.4e-46 188.7 169 55.6
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 1.7e-45 186.4 163 58.9
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.2e-45 186.0 165 60.0
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.9e-45 185.7 165 57.6
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 4.9e-45 184.9 165 58.8
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.4e-44 183.3 165 57.6
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 1.4e-44 183.3 166 57.2
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.9e-44 183.0 165 57.0
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.0e-43 179.5 165 58.2
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 3.5e-43 178.7 165 58.2
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 3.5e-43 178.7 158 59.5
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 6.0e-43 177.9 166 56.0
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 6.0e-43 177.9 166 56.0
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 6.0e-43 177.9 163 55.8
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 7.8e-43 177.6 166 56.0
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.3e-42 176.8 167 55.1
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.0e-42 175.6 159 59.7
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 3.9e-42 175.3 166 55.4
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 3.9e-42 175.3 166 55.4
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 3.9e-42 175.3 167 55.1
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 8.6e-42 174.1 164 55.5
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 8.6e-42 174.1 155 56.8
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.1e-41 173.7 163 59.5
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.3e-41 172.2 123 68.3
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.6e-40 169.9 165 55.2
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 4.7e-40 168.3 131 66.4
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 1.4e-39 166.8 121 71.1
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.3e-37 160.2 163 52.8
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 2.9e-37 159.1 165 50.9
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 2.9e-37 159.1 136 62.5
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 8.3e-37 157.5 123 61.8
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.1e-36 157.1 126 65.9
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.4e-36 156.8 165 52.1
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.4e-36 156.8 165 52.1
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 1.2e-35 153.7 161 51.6
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 4.6e-35 151.8 129 60.5
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.0e-35 151.4 124 60.5
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.1e-33 147.1 156 48.1
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 1.1e-33 147.1 156 45.5
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 4.3e-33 145.2 158 47.5
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.8e-31 139.8 124 57.3
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 5.2e-31 138.3 119 59.7
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 2.0e-30 136.3 111 60.4
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 2.0e-30 136.3 124 57.3
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.2e-29 132.9 113 57.5
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 4.9e-29 131.7 164 48.8
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 4.9e-29 131.7 122 49.2
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 6.4e-29 131.3 96 61.5
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 7.1e-28 127.9 169 45.6
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.2e-27 127.1 151 49.0
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 4.6e-27 125.2 120 48.3
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 7.8e-27 124.4 166 48.8
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 7.8e-27 124.4 121 50.4
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.3e-26 123.6 166 48.2
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.1e-26 121.7 166 48.2
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 4.3e-25 118.6 133 45.1
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 4.7e-24 115.2 80 70.0
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.1e-23 114.0 89 64.0
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 5.8e-22 108.2 169 42.0
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 3.8e-21 105.5 76 68.4
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 1.1e-20 104.0 135 42.2
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 1.3e-18 97.1 63 65.1
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 3.8e-13 79.0 76 46.1
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 3.8e-13 79.0 63 52.4
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 9.3e-12 74.3 87 50.6
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.5e-11 72.4 162 34.6
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 4.6e-11 72.0 81 51.9
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 3.0e-10 69.3 68 60.3
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.1e-10 68.6 61 59.0
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.1e-09 67.4 57 61.4
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.1e-09 67.4 57 61.4
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.5e-09 67.0 63 44.4
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.9e-09 66.6 119 33.6
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.6e-09 65.1 66 59.1
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.6e-09 65.1 61 60.7
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 1.3e-08 63.9 89 38.2
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 2.1e-08 63.2 107 36.4
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.8e-07 60.1 64 54.7
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 6.9e-07 58.2 84 44.0
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.5e-06 57.0 53 60.4
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 3.4e-06 55.8 114 36.0
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 3.4e-06 55.8 102 32.4


User provided reference genes

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