Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 0.0e+00 1626.7 860 100.0
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 0.0e+00 1460.3 871 85.8
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 0.0e+00 1444.5 863 85.7
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 0.0e+00 1432.9 836 87.2
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 0.0e+00 1431.0 889 83.9
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 0.0e+00 1324.7 868 81.0
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 0.0e+00 1306.6 953 75.1
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 0.0e+00 1244.2 871 75.7
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 0.0e+00 1146.3 865 70.6
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 0.0e+00 1081.6 819 66.8
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 0.0e+00 1077.4 809 68.4
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 2.4e-311 1072.0 864 67.5
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 9.9e-310 1066.6 815 66.6
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.3e-309 1066.2 815 69.9
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 9.3e-308 1060.1 803 68.7
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.1e-307 1058.9 831 68.2
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 1.3e-304 1049.7 811 68.9
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.4e-303 1045.4 805 69.9
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 2.0e-302 1042.3 827 65.4
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 4.5e-302 1041.2 807 65.7
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 5.8e-302 1040.8 805 69.8
PGR119G0747 Punica granatum HOM05D007000 ORTHO05D009020 5.8e-302 1040.8 804 66.8
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 3.8e-301 1038.1 795 68.6
Sed0022610 Sechium edule HOM05D007000 ORTHO05D009020 7.1e-300 1033.9 809 66.4
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 3.3e-297 1025.0 783 66.2
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 1.1e-295 1020.0 814 64.0
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 3.4e-294 1015.0 792 68.3
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 2.5e-292 1008.8 781 68.2
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 2.9e-285 985.3 820 65.1
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 5.0e-285 984.6 820 63.9
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 4.6e-283 978.0 794 65.6
CSS0049563 Camellia sinensis var. sinensis HOM05D007000 ORTHO05D009020 7.9e-283 977.2 583 80.4
Migut.D02336 Erythranthe guttata HOM05D007000 ORTHO05D009020 1.3e-282 976.5 789 63.4
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 3.1e-279 965.3 761 65.4
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 1.2e-278 963.4 759 65.5
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 1.5e-278 963.0 755 65.3
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 2.6e-278 962.2 800 63.6
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 5.9e-278 961.1 781 62.5
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 7.7e-278 960.7 742 66.2
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 5.5e-276 954.5 857 61.0
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 1.2e-275 953.4 808 62.9
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 5.1e-274 948.0 815 63.6
A10p18280 Brassica napus HOM05D007000 ORTHO05D009020 6.7e-274 947.6 817 62.2
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 1.1e-273 946.8 757 63.5
BolC9t58265H Brassica oleracea HOM05D007000 ORTHO05D009020 2.0e-273 946.0 808 61.9
Nitab4.5_0001453g0060 Nicotiana tabacum HOM05D007000 ORTHO05D009020 2.6e-273 945.7 782 63.9
Sc12g0004140 Simmondsia chinensis HOM05D007000 ORTHO05D009020 3.3e-273 945.3 666 70.3
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 1.1e-271 940.3 811 61.9
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 4.1e-271 938.3 879 60.2
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 9.1e-271 937.2 824 62.0
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 9.1e-271 937.2 807 60.2
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 7.7e-270 934.1 828 61.2
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 1.3e-269 933.3 804 61.7
C09p53930 Brassica napus HOM05D007000 ORTHO05D009020 3.8e-269 931.8 834 60.0
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 6.5e-269 931.0 822 60.6
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 1.1e-268 930.2 813 61.7
Carub.0006s2036 Capsella rubella HOM05D007000 ORTHO05D009020 1.8e-266 922.9 737 65.0
AUR62038302 Chenopodium quinoa HOM05D007000 ORTHO05D009020 3.0e-266 922.2 779 60.1
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 1.1e-265 920.2 677 70.0
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 1.3e-264 916.8 814 60.9
Nitab4.5_0007303g0050 Nicotiana tabacum HOM05D007000 ORTHO05D009020 1.3e-264 916.8 694 67.0
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 3.1e-263 912.1 806 60.5
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 1.7e-261 906.4 825 59.5
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 1.5e-260 903.3 866 59.0
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 8.0e-259 897.5 803 61.5
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 4.0e-258 895.2 811 59.7
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 1.5e-257 893.3 822 58.8
CDE02G4201 Ceratophyllum demersum HOM05D007000 ORTHO05D009020 2.0e-257 892.9 738 62.1
EL10Ac9g21077 Beta vulgaris HOM05D007000 ORTHO05D009020 9.7e-257 890.6 772 62.2
AUR62023939 Chenopodium quinoa HOM05D007000 ORTHO05D009020 1.4e-255 886.7 532 73.3
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 3.8e-253 878.6 791 61.2
ATR0820G103 Amborella trichopoda HOM05D007000 ORTHO05D009020 2.8e-248 862.4 765 59.1
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 2.8e-248 862.4 797 56.8
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 2.0e-246 856.3 890 54.6
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 2.2e-245 852.8 889 54.1
DCAR_012163 Daucus carota HOM05D007000 ORTHO05D009020 4.2e-244 848.6 761 58.6
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 1.2e-243 847.0 798 58.1
unitig_747.g21960 Utricularia gibba HOM05D007000 ORTHO05D009020 1.5e-241 840.1 727 60.4
Ah.01g004600 Amaranthus hybridus HOM05D007000 ORTHO05D009020 9.8e-241 837.4 808 57.2
HanXRQChr14g0451961 Helianthus annuus HOM05D007000 ORTHO05D009020 1.7e-240 836.6 806 55.5
SGA_v2.0_scaffold193G40708 Striga asiatica HOM05D007000 ORTHO05D009020 1.4e-239 833.6 741 61.3
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 3.1e-239 832.4 793 57.9
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 2.7e-238 829.3 834 55.4
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 4.0e-234 815.5 793 57.1
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 6.8e-226 788.1 611 69.2
Lsat_1_v5_gn_2_96400 Lactuca sativa HOM05D007000 ORTHO05D009020 2.0e-225 786.6 721 58.7
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 1.0e-221 774.2 797 55.0
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 4.8e-179 632.5 578 58.3
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.3e-173 613.6 588 63.3
Haze_23451 Corylus avellana HOM05D007000 ORTHO05D009020 3.1e-162 576.6 394 68.5
HPP92_011511 Vanilla planifolia HOM05D007000 ORTHO05D009020 3.2e-159 566.6 343 74.3
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.2e-158 564.7 808 43.8
Pp3c14_2260 Physcomitrium patens HOM05D007000 ORTHO05D009020 1.7e-155 554.3 455 58.7
Mapoly0021s0145 Marchantia polymorpha HOM05D007000 ORTHO05D009020 5.0e-152 542.7 586 48.5
Atru.chr3.3385 Acer truncatum HOM05D007000 ORTHO05D009020 7.2e-151 538.9 494 59.5
SEGI_23936 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 3.1e-138 496.9 621 45.4
ScUNg0001440 Simmondsia chinensis HOM05D007000 ORTHO05D009020 7.0e-138 495.7 400 65.5
MD11G1157100 Malus domestica HOM05D007000 ORTHO05D009020 1.1e-130 471.9 521 58.5
HPP92_011563 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.8e-130 471.1 264 79.2
AagrBONN_evm.TU.Sc2ySwM_344.1665 Anthoceros agrestis HOM05D007000 ORTHO05D009020 3.6e-110 403.7 346 54.9
HPP92_011520 Vanilla planifolia HOM05D007000 ORTHO05D009020 4.4e-108 396.7 405 50.4
Cpa.g.sc47.64 Carica papaya HOM05D007000 ORTHO05D009020 1.5e-100 371.7 351 53.3
Atru.chr3.3384 Acer truncatum HOM05D007000 ORTHO05D009020 1.1e-98 365.5 188 86.2
Oeu050178.1 Olea europaea HOM05D007000 ORTHO05D009020 2.2e-91 341.3 345 59.4
Peaxi162Scf00789g00535 Petunia axillaris HOM05D007000 ORTHO05D009020 1.9e-90 338.2 196 77.0
BcaC04g19594 Brassica carinata HOM05D007000 ORTHO05D009020 4.3e-79 300.4 182 70.9
Cpa.g.sc47.63 Carica papaya HOM05D007000 ORTHO05D009020 2.8e-70 271.2 319 58.3
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.0e-36 158.7 117 64.1
Actinidia35447 Actinidia chinensis HOM05D007000 ORTHO05D009020 6.1e-33 147.1 83 77.1
CBR_g22485 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-30 139.4 441 28.8
HPP92_011562 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.2e-20 106.3 111 42.3
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 5.0e-19 100.9 77 62.3
SEGI_03022 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 6.1e-17 94.0 72 52.8
Potri.004G188432 Populus trichocarpa HOM05D007000 ORTHO05D030830 2.5e-10 72.0 157 44.6
Actinidia27040 Actinidia chinensis HOM05D007000 ORTHO05D030830 5.2e-08 64.3 289 31.5


User provided reference genes

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