Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0055151 Rosa chinensis HOM05D001416 ORTHO05D020379 7.0e-41 170.2 89 100.0
FAN04G0436 Fragaria x ananassa HOM05D001416 ORTHO05D002549 3.1e-09 65.1 60 65.0
FAN08G3351 Fragaria x ananassa HOM05D001416 ORTHO05D002549 3.1e-09 65.1 60 65.0
FAN13G2060 Fragaria x ananassa HOM05D001416 ORTHO05D002549 3.1e-09 65.1 60 65.0
FvH4_5g37810 Fragaria vesca HOM05D001416 ORTHO05D002549 1.6e-08 62.8 60 61.7
FAN18G3578 Fragaria x ananassa HOM05D001416 ORTHO05D002549 1.6e-08 62.8 60 61.7
RcHm_v2.0_Chr7g0239691 Rosa chinensis HOM05D001416 ORTHO05D002549 2.7e-08 62.0 60 61.7
MD15G1365600 Malus domestica HOM05D001416 ORTHO05D002549 3.5e-08 61.6 60 61.7
Prupe.1G513700 Prunus persica HOM05D001416 ORTHO05D002549 3.5e-08 61.6 60 61.7
MD08G1180300 Malus domestica HOM05D001416 ORTHO05D002549 4.5e-08 61.2 60 61.7
Lj4C721G30 Lonicera japonica HOM05D001416 ORTHO05D002549 5.9e-08 60.8 43 74.4
TPR.G31689 Trifolium pratense HOM05D001416 ORTHO05D002549 5.9e-08 60.8 43 72.1
Phvul.008G172300 Phaseolus vulgaris HOM05D001416 ORTHO05D002549 7.8e-08 60.5 43 72.1
Actinidia10309 Actinidia chinensis HOM05D001416 ORTHO05D002549 1.0e-07 60.1 60 61.7
Sed0021684 Sechium edule HOM05D001416 ORTHO05D002549 1.3e-07 59.7 43 72.1
CANSAT25G1498 Cannabis sativa HOM05D001416 ORTHO05D002549 2.3e-07 58.9 60 56.7
Ca_25832_v3 Cicer arietinum L. HOM05D001416 ORTHO05D002549 2.3e-07 58.9 43 69.8
Cc10_g07440 Coffea canephora HOM05D001416 ORTHO05D002549 2.3e-07 58.9 60 60.0
Lalb_Chr10g0102261 Lupinus albus HOM05D001416 ORTHO05D002549 2.9e-07 58.5 43 69.8
GSVIVG01009009001 Vitis vinifera HOM05D001416 ORTHO05D002549 2.9e-07 58.5 60 58.3
Cpa.g.sc36.115 Carica papaya HOM05D001416 ORTHO05D002549 3.9e-07 58.2 60 58.3
CiPaw.07G181800 Carya illinoinensis HOM05D001416 ORTHO05D002549 3.9e-07 58.2 60 56.7
AUR62027728 Chenopodium quinoa HOM05D001416 ORTHO05D002549 3.9e-07 58.2 43 72.1
Haze_22244 Corylus avellana HOM05D005862 ORTHO05D002549 3.9e-07 58.2 60 58.3
Medtr5g062720 Medicago truncatula HOM05D001416 ORTHO05D002549 3.9e-07 58.2 43 67.4
Oeu024545.1 Olea europaea HOM05D001416 ORTHO05D002549 3.9e-07 58.2 60 58.3
Psat2g073480 Pisum sativum HOM05D001416 ORTHO05D002549 3.9e-07 58.2 60 58.3
Sed0011493 Sechium edule HOM05D001416 ORTHO05D002549 3.9e-07 58.2 60 56.7
TAR381G1693 Trochodendron aralioides HOM05D001416 ORTHO05D002549 3.9e-07 58.2 60 58.3
Aqoxy6G00594 Aquilegia oxysepala HOM05D001416 ORTHO05D002549 5.0e-07 57.8 60 56.7
arahy.Tifrunner.gnm1.ann1.C5YUKW Arachis hypogaea HOM05D001416 ORTHO05D002549 5.0e-07 57.8 43 65.1
arahy.Tifrunner.gnm1.ann1.EX4ZWX Arachis hypogaea HOM05D001416 ORTHO05D002549 5.0e-07 57.8 43 65.1
Duzib093G0069 Durio zibethinus HOM05D001416 ORTHO05D002549 5.0e-07 57.8 48 60.4
Gohir.A05G267500 Gossypium hirsutum HOM05D001416 ORTHO05D002549 5.0e-07 57.8 43 67.4
Gohir.D05G230600 Gossypium hirsutum HOM05D001416 ORTHO05D002549 5.0e-07 57.8 43 67.4
Gohir.D05G269300 Gossypium hirsutum HOM05D001416 ORTHO05D002549 5.0e-07 57.8 43 67.4
Gorai.009G238700 Gossypium raimondii HOM05D001416 ORTHO05D002549 5.0e-07 57.8 43 67.4
Gorai.009G281900 Gossypium raimondii HOM05D001416 ORTHO05D002549 5.0e-07 57.8 43 67.4
Lj1g0015053 Lotus japonicus HOM05D001416 ORTHO05D002549 5.0e-07 57.8 60 56.7
QL12p036242 Quercus lobata HOM05D001416 ORTHO05D002549 5.0e-07 57.8 55 60.0
Sabra05G0125800 Salix brachista HOM05D001416 ORTHO05D002549 5.0e-07 57.8 60 58.3
Hund26952 Selenicereus undatus HOM05D001416 ORTHO05D002549 5.0e-07 57.8 43 72.1
Aa31LG6G8930 Aethionema arabicum HOM05D001416 ORTHO05D002549 6.6e-07 57.4 43 67.4
ClCG08G011000 Citrullus lanatus HOM05D001416 ORTHO05D002549 6.6e-07 57.4 60 55.0
Cc02_g21640 Coffea canephora HOM05D001416 ORTHO05D002549 6.6e-07 57.4 43 67.4
Migut.C00010 Erythranthe guttata HOM05D001416 ORTHO05D002549 6.6e-07 57.4 43 69.8
Lalb_Chr17g0344121 Lupinus albus HOM05D001416 ORTHO05D002549 6.6e-07 57.4 43 69.8
Os04g0455900 Oryza sativa ssp. japonica HOM05D001416 ORTHO05D002549 6.6e-07 57.4 55 58.2
Potri.005G168800 Populus trichocarpa HOM05D001416 ORTHO05D002549 6.6e-07 57.4 60 56.7
Ah.05g170250 Amaranthus hybridus HOM05D001416 ORTHO05D002549 8.6e-07 57.0 60 56.7
MELO3C011363.2 Cucumis melo HOM05D001416 ORTHO05D002549 8.6e-07 57.0 60 56.7
Glyma.14G171600 Glycine max HOM05D001416 ORTHO05D002549 8.6e-07 57.0 60 56.7
Manes.18G068900 Manihot esculenta HOM05D001416 ORTHO05D002549 8.6e-07 57.0 60 58.3
SalBow7G4657 Salvia bowleyana HOM05D001416 ORTHO05D002549 8.6e-07 57.0 43 72.1
THA.LOC104810863 Tarenaya hassleriana HOM05D001416 ORTHO05D002549 8.6e-07 57.0 43 67.4
A07p43320 Brassica napus HOM05D001416 ORTHO05D002549 1.1e-06 56.6 43 67.4
Ciclev10001505m.g Citrus clementina HOM05D001416 ORTHO05D002549 1.1e-06 56.6 43 69.8
Glyma.13G088200 Glycine max HOM05D001416 ORTHO05D002549 1.1e-06 56.6 60 56.7
Hma1.2p1_0120F.1_g057240 Hydrangea macrophylla HOM05D001416 ORTHO05D002549 1.1e-06 56.6 60 56.7
Lsat_1_v5_gn_9_43801 Lactuca sativa HOM05D001416 ORTHO05D002549 1.1e-06 56.6 43 67.4
Rhsim05G0108600 Rhododendron simsii HOM05D001416 ORTHO05D002549 1.1e-06 56.6 43 65.1
TWI56G0586 Tripterygium wilfordii HOM05D001416 ORTHO05D002549 1.1e-06 56.6 60 56.7
vmacro19924 Vaccinium macrocarpon HOM05D001416 ORTHO05D002549 1.1e-06 56.6 43 65.1
AT1G22200 Arabidopsis thaliana HOM05D001416 ORTHO05D002549 1.5e-06 56.2 43 67.4
CANSAT11G0506 Cannabis sativa HOM05D001416 ORTHO05D002549 1.5e-06 56.2 43 65.1
AUR62018917 Chenopodium quinoa HOM05D001416 ORTHO05D002549 1.5e-06 56.2 60 58.3
CsaV3_1G022910 Cucumis sativus L. HOM05D001416 ORTHO05D002549 1.5e-06 56.2 60 55.0
SGA_v2.0_scaffold28G11933 Striga asiatica HOM05D001416 ORTHO05D002549 1.5e-06 56.2 60 55.0
Atru.chr6.1110 Acer truncatum HOM05D001416 ORTHO05D002549 1.9e-06 55.8 43 65.1
BcaB04g17833 Brassica carinata HOM05D001416 ORTHO05D002549 1.9e-06 55.8 43 65.1
BcaB07g32240 Brassica carinata HOM05D001416 ORTHO05D002549 1.9e-06 55.8 40 70.0
BcaC07g37508 Brassica carinata HOM05D001416 ORTHO05D002549 1.9e-06 55.8 43 65.1
A08p07990 Brassica napus HOM05D001416 ORTHO05D002549 1.9e-06 55.8 43 65.1
BraA08t32823Z Brassica rapa HOM05D001416 ORTHO05D002549 1.9e-06 55.8 43 65.1
CSS0008367 Camellia sinensis var. sinensis HOM05D001416 ORTHO05D002549 1.9e-06 55.8 60 55.0
CARHR034660 Cardamine hirsuta HOM05D001416 ORTHO05D002549 1.9e-06 55.8 43 65.1
ClCG11G015430 Citrullus lanatus HOM05D001416 ORTHO05D002549 1.9e-06 55.8 43 65.1
Duzib041G0296 Durio zibethinus HOM05D001416 ORTHO05D002549 1.9e-06 55.8 60 55.0
Sp1g30590 Schrenkiella parvula HOM05D001416 ORTHO05D002549 1.9e-06 55.8 43 65.1
AL1G50820 Arabidopsis lyrata HOM05D001416 ORTHO05D002549 2.5e-06 55.5 43 65.1
AT1G36050 Arabidopsis thaliana HOM05D001416 ORTHO05D002549 2.5e-06 55.5 43 65.1
EL10Ac1g01252 Beta vulgaris HOM05D001416 ORTHO05D002549 2.5e-06 55.5 60 56.7
Carub.0001s3355 Capsella rubella HOM05D001416 ORTHO05D002549 2.5e-06 55.5 43 65.1
CDE06G0807 Ceratophyllum demersum HOM05D001416 ORTHO05D002549 2.5e-06 55.5 60 51.7
Gohir.A05G228000 Gossypium hirsutum HOM05D001416 ORTHO05D002549 2.5e-06 55.5 43 65.1
Atru.chr13.1230 Acer truncatum HOM05D001416 ORTHO05D002549 3.3e-06 55.1 60 55.0
Aa31LG4G8130 Aethionema arabicum HOM05D001416 ORTHO05D002549 3.3e-06 55.1 43 67.4
CiPaw.08G043800 Carya illinoinensis HOM05D001416 ORTHO05D002549 3.3e-06 55.1 43 65.1
COL.COLO4_16232 Corchorus olitorius HOM05D001416 ORTHO05D002549 3.3e-06 55.1 43 62.8
MELO3C010426.2 Cucumis melo HOM05D001416 ORTHO05D002549 3.3e-06 55.1 43 65.1
CsaV3_4G028660 Cucumis sativus L. HOM05D001416 ORTHO05D002549 3.3e-06 55.1 43 65.1
Thhalv10003455m.g Eutrema salsugineum HOM05D001416 ORTHO05D002549 3.3e-06 55.1 43 65.1
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 3.3e-06 55.1 60 56.7
Potri.002G094400 Populus trichocarpa HOM05D001416 ORTHO05D002549 3.3e-06 55.1 60 55.0
Sabra02G0074400 Salix brachista HOM05D001416 ORTHO05D002549 3.3e-06 55.1 43 62.8
Sp5g33220 Schrenkiella parvula HOM05D001416 ORTHO05D002549 3.3e-06 55.1 43 65.1
THA.LOC104813122 Tarenaya hassleriana HOM05D001416 ORTHO05D002549 3.3e-06 55.1 43 65.1
unitig_747.g21550 Utricularia gibba HOM05D001416 ORTHO05D002549 3.3e-06 55.1 43 62.8
BcaC08g47383 Brassica carinata HOM05D001416 ORTHO05D002549 4.3e-06 54.7 43 65.1
C06p52040 Brassica napus HOM05D001416 ORTHO05D002549 4.3e-06 54.7 43 65.1
CARHR022550 Cardamine hirsuta HOM05D001416 ORTHO05D002549 4.3e-06 54.7 40 70.0
Dinv09039 Davidia involucrata HOM05D001416 ORTHO05D002549 4.3e-06 54.7 43 65.1
Dinv13031 Davidia involucrata HOM05D001416 ORTHO05D002549 4.3e-06 54.7 60 55.0
Thhalv10007894m.g Eutrema salsugineum HOM05D001416 ORTHO05D002549 4.3e-06 54.7 43 65.1
Nitab4.5_0000675g0020 Nicotiana tabacum HOM05D001416 ORTHO05D002549 4.3e-06 54.7 60 55.0
Nitab4.5_0001992g0120 Nicotiana tabacum HOM05D001416 ORTHO05D002549 4.3e-06 54.7 60 55.0
Sp1g19700 Schrenkiella parvula HOM05D001416 ORTHO05D002549 4.3e-06 54.7 43 65.1
Sc01g0000290 Simmondsia chinensis HOM05D001416 ORTHO05D002549 4.3e-06 54.7 43 67.4
Solyc04g072910.3 Solanum lycopersicum HOM05D001416 ORTHO05D002549 4.3e-06 54.7 43 65.1
Sopen04g029090 Solanum pennellii HOM05D001416 ORTHO05D002549 4.3e-06 54.7 43 65.1
SGA_v2.0_scaffold83G26296 Striga asiatica HOM05D001416 ORTHO05D002549 4.3e-06 54.7 43 65.1
Thecc.02G140200 Theobroma cacao HOM05D001416 ORTHO05D002549 4.3e-06 54.7 43 62.8
Thecc.08G109700 Theobroma cacao HOM05D001416 ORTHO05D002549 4.3e-06 54.7 60 53.3
TWI12G0125 Tripterygium wilfordii HOM05D001416 ORTHO05D002549 4.3e-06 54.7 60 53.3
BcaB03g15974 Brassica carinata HOM05D001416 ORTHO05D002549 5.6e-06 54.3 43 65.1
BraA07t31853Z Brassica rapa HOM05D001416 ORTHO05D002549 5.6e-06 54.3 43 65.1
CAN.G1261.10 Capsicum annuum HOM05D001416 ORTHO05D002549 5.6e-06 54.3 60 53.3
ECA236G2532 Erigeron canadensis HOM05D001416 ORTHO05D002549 5.6e-06 54.3 43 62.8
HanXRQChr11g0338141 Helianthus annuus HOM05D001416 ORTHO05D002549 5.6e-06 54.3 43 62.8
Peaxi162Scf00001g00225 Petunia axillaris HOM05D001416 ORTHO05D002549 5.6e-06 54.3 43 62.8
Aa31LG7G6140 Aethionema arabicum HOM05D001416 ORTHO05D002549 7.3e-06 53.9 39 69.2
MSTRG.16577 Avicennia marina HOM05D001416 ORTHO05D002549 7.3e-06 53.9 43 62.8
BcaB07g32239 Brassica carinata HOM05D001416 ORTHO05D002549 7.3e-06 53.9 39 66.7
BcaC05g26148 Brassica carinata HOM05D001416 ORTHO05D002549 7.3e-06 53.9 39 66.7
A09p42570 Brassica napus HOM05D001416 ORTHO05D002549 7.3e-06 53.9 39 66.7
C05p21330 Brassica napus HOM05D001416 ORTHO05D002549 7.3e-06 53.9 39 66.7
BolC5t30831H Brassica oleracea HOM05D001416 ORTHO05D002549 7.3e-06 53.9 39 66.7
BraA09t39732Z Brassica rapa HOM05D001416 ORTHO05D002549 7.3e-06 53.9 39 66.7
CSS0025458 Camellia sinensis var. sinensis HOM05D001416 ORTHO05D002549 7.3e-06 53.9 60 56.7
MBI02_g36655_MAGBIO Magnolia biondii HOM05D001416 ORTHO05D002549 7.3e-06 53.9 43 62.8
Nn1g05311 Nelumbo nucifera HOM05D001416 ORTHO05D002549 7.3e-06 53.9 43 65.1
PGSC0003DMG400012563 Solanum tuberosum HOM05D001416 ORTHO05D002549 7.3e-06 53.9 43 62.8
vmacro21238 Vaccinium macrocarpon HOM05D001416 ORTHO05D002549 7.3e-06 53.9 39 74.4
Lsat_1_v5_gn_7_80861 Lactuca sativa HOM05D001416 ORTHO05D002549 9.5e-06 53.5 43 62.8
MBI05_g32460_MAGBIO Magnolia biondii HOM05D001416 ORTHO05D002549 9.5e-06 53.5 60 55.0
Prupe.1G119300 Prunus persica HOM05D001416 ORTHO05D020379 9.5e-06 53.5 46 60.9
PGR042G2593 Punica granatum HOM05D001416 ORTHO05D002549 9.5e-06 53.5 60 51.7
Solyc01g105100.3 Solanum lycopersicum HOM05D001416 ORTHO05D002549 9.5e-06 53.5 43 60.5
Sopen01g047640 Solanum pennellii HOM05D001416 ORTHO05D002549 9.5e-06 53.5 43 60.5


User provided reference genes

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