Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 5.7e-56 220.7 113 100.0
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 5.4e-30 134.4 120 67.5
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 1.6e-29 132.9 120 66.7
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 2.9e-28 128.6 120 65.0
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.5e-27 126.3 117 66.7
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.5e-27 126.3 117 66.7
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 2.5e-27 125.6 120 63.3
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 5.6e-27 124.4 117 65.8
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 5.6e-27 124.4 117 65.8
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 7.3e-27 124.0 120 61.7
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 1.6e-26 122.9 120 60.0
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 2.8e-26 122.1 120 60.8
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 3.6e-26 121.7 120 60.0
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.6e-26 121.7 108 62.0
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 3.6e-26 121.7 120 60.0
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 3.6e-26 121.7 120 60.0
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 4.7e-26 121.3 120 60.0
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 8.0e-26 120.6 120 59.2
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 1.4e-25 119.8 120 59.2
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.8e-25 119.4 120 60.0
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.8e-25 119.4 120 59.2
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 2.3e-25 119.0 116 61.2
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 2.3e-25 119.0 120 59.2
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 2.3e-25 119.0 120 60.0
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 3.0e-25 118.6 120 59.2
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.0e-25 118.6 120 60.0
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 4.0e-25 118.2 120 59.2
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.0e-25 118.2 120 60.0
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.0e-25 118.2 120 60.0
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 5.2e-25 117.9 120 58.3
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 5.2e-25 117.9 120 60.0
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 5.2e-25 117.9 120 59.2
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 6.8e-25 117.5 120 60.0
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 8.9e-25 117.1 120 58.3
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 1.2e-24 116.7 116 62.1
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 1.2e-24 116.7 120 56.7
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.5e-24 116.3 120 58.3
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.5e-24 116.3 120 58.3
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 1.5e-24 116.3 120 60.0
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 1.5e-24 116.3 120 58.3
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 2.0e-24 115.9 120 58.3
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.0e-24 115.9 120 58.3
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 2.6e-24 115.5 120 56.7
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 2.6e-24 115.5 120 56.7
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 2.6e-24 115.5 120 60.0
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 3.4e-24 115.2 120 60.0
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 3.4e-24 115.2 120 59.2
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 3.4e-24 115.2 120 59.2
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 4.4e-24 114.8 120 59.2
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 5.7e-24 114.4 120 56.7
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 5.7e-24 114.4 120 58.3
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 5.7e-24 114.4 117 59.8
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 7.5e-24 114.0 117 58.1
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 7.5e-24 114.0 119 54.6
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 7.5e-24 114.0 120 57.5
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 7.5e-24 114.0 120 55.8
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 9.8e-24 113.6 120 56.7
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 9.8e-24 113.6 120 55.8
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 9.8e-24 113.6 120 58.3
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 1.3e-23 113.2 120 56.7
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 1.3e-23 113.2 120 56.7
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 1.7e-23 112.8 120 57.5
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 1.7e-23 112.8 120 57.5
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.2e-23 112.5 117 59.0
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.2e-23 112.5 120 56.7
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 3.7e-23 111.7 120 54.2
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 3.7e-23 111.7 120 55.8
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 4.9e-23 111.3 120 55.0
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 4.9e-23 111.3 120 55.0
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 4.9e-23 111.3 120 55.0
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 6.4e-23 110.9 115 58.3
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 8.3e-23 110.5 132 50.0
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 1.1e-22 110.2 117 56.4
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-22 110.2 120 54.2
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.1e-22 110.2 120 55.8
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-22 109.8 120 55.0
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 1.8e-22 109.4 120 56.7
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 2.4e-22 109.0 120 55.8
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 2.4e-22 109.0 117 56.4
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 3.2e-22 108.6 112 58.9
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 4.1e-22 108.2 118 55.9
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 4.1e-22 108.2 118 55.9
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 5.4e-22 107.8 120 55.0
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 7.0e-22 107.5 120 55.0
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 9.2e-22 107.1 120 55.0
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 9.2e-22 107.1 112 57.1
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 9.2e-22 107.1 120 55.0
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 1.2e-21 106.7 120 55.0
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.2e-21 106.7 120 55.0
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.2e-21 106.7 120 55.0
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 1.6e-21 106.3 120 55.0
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.6e-21 106.3 110 59.1
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 1.6e-21 106.3 120 54.2
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.0e-21 105.9 120 54.2
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.7e-21 105.5 112 58.0
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 2.7e-21 105.5 112 57.1
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 3.5e-21 105.1 120 52.5
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 3.5e-21 105.1 120 55.0
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 3.5e-21 105.1 112 57.1
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 4.6e-21 104.8 120 54.2
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 4.6e-21 104.8 120 55.0
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 5.9e-21 104.4 114 54.4
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 5.9e-21 104.4 112 58.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 5.9e-21 104.4 101 60.4
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 1.0e-20 103.6 118 54.2
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 1.0e-20 103.6 118 54.2
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.0e-20 103.6 120 52.5
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.3e-20 103.2 87 60.9
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.7e-20 102.8 103 58.3
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 1.7e-20 102.8 120 52.5
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 2.3e-20 102.4 110 55.5
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 3.9e-20 101.7 120 51.7
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 5.0e-20 101.3 112 56.2
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 6.6e-20 100.9 120 50.8
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.1e-19 100.1 112 54.5
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 4.3e-19 98.2 136 47.1
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 7.3e-19 97.4 112 52.7
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.2e-18 96.7 112 55.4
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 6.2e-18 94.4 112 52.7
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 6.2e-18 94.4 112 52.7
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 1.5e-16 89.7 112 49.1
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 1.5e-16 89.7 117 52.1
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 7.5e-16 87.4 118 46.6
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 9.8e-16 87.0 107 52.3
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 1.3e-15 86.7 115 45.2
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 7.0e-14 80.9 111 45.9
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.5e-11 73.2 37 94.6
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 1.9e-11 72.8 37 91.9
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 4.3e-11 71.6 59 64.4
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.3e-11 71.6 37 91.9
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 4.3e-11 71.6 42 88.1
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.2e-10 70.1 37 89.2
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 1.2e-10 70.1 41 82.9
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.8e-10 68.9 36 91.7
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 2.8e-10 68.9 117 36.8
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.8e-09 66.2 34 91.2
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 1.5e-08 63.2 43 67.4
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.4e-08 61.6 37 78.4
FAN25G2428 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.9e-08 60.5 39 79.5
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 9.9e-08 60.5 43 67.4
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.3e-07 60.1 43 65.1
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.7e-07 59.7 43 65.1
FvH4_3g41821 Fragaria vesca HOM05D048608 ORTHO05D198096 8.3e-07 57.4 39 76.9
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 1.4e-06 56.6 43 65.1
FAN16G0319 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.9e-06 56.2 39 74.4
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 2.4e-06 55.8 111 36.9
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 4.1e-06 55.1 29 89.7
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 4.1e-06 55.1 32 81.2
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.1e-06 54.3 46 63.0


User provided reference genes

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