Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0053961 Rosa chinensis HOM05D009145 ORTHO05D000140 6.1e-103 377.5 190 100.0
RcHm_v2.0_Chr7g0231381 Rosa chinensis HOM05D000665 ORTHO05D000140 4.1e-91 338.2 182 94.5
RcHm_v2.0_Chr4g0405761 Rosa chinensis HOM05D000665 ORTHO05D000140 6.6e-73 277.7 155 91.0
RcHm_v2.0_Chr4g0417571 Rosa chinensis HOM05D009145 ORTHO05D000140 8.1e-71 270.8 161 88.8
FAN14G0837 Fragaria x ananassa HOM05D009145 ORTHO05D000140 2.3e-33 146.4 220 41.8
FvH4_6g32032 Fragaria vesca HOM05D000665 ORTHO05D000140 8.7e-33 144.4 220 41.4
FAN09G3992 Fragaria x ananassa HOM05D000665 ORTHO05D000140 1.1e-30 137.5 210 40.0
COL.COLO4_20623 Corchorus olitorius HOM05D009145 ORTHO05D000140 2.5e-27 126.3 179 41.3
EL10Ac4g08803 Beta vulgaris HOM05D009145 ORTHO05D000140 1.5e-24 117.1 177 39.0
Migut.E01617 Erythranthe guttata HOM05D009145 ORTHO05D000140 4.3e-24 115.5 153 43.8
SGA_v2.0_scaffold134G34689 Striga asiatica HOM05D009145 ORTHO05D000140 5.7e-24 115.2 177 38.4
MD07G1064000 Malus domestica HOM05D009249 ORTHO05D002074 1.3e-23 114.0 103 57.3
EL10Ac9g20779 Beta vulgaris HOM05D009145 ORTHO05D000140 2.8e-23 112.8 177 37.9
EL10Ac4g08060 Beta vulgaris HOM05D009145 ORTHO05D000140 1.1e-22 110.9 176 34.1
AUR62028861 Chenopodium quinoa HOM05D000034 ORTHO05D000037 1.0e-20 104.4 176 36.4
EL10Ac1g02133 Beta vulgaris HOM05D009145 ORTHO05D000140 3.8e-20 102.4 159 38.4
Migut.C00054 Erythranthe guttata HOM05D000665 ORTHO05D000140 3.8e-20 102.4 152 38.2
EL10Ac6g14168 Beta vulgaris HOM05D009145 ORTHO05D000140 7.2e-19 98.2 170 32.4
EL10As1g23106 Beta vulgaris HOM05D000034 ORTHO05D000037 2.7e-18 96.3 160 34.4
EL10Ac2g04238 Beta vulgaris HOM05D009145 ORTHO05D000140 4.6e-18 95.5 153 37.9
AUR62038998 Chenopodium quinoa HOM05D009145 ORTHO05D000140 1.8e-17 93.6 168 35.7
Glyma.09G072900 Glycine max HOM05D000665 ORTHO05D000140 1.8e-17 93.6 180 35.0
EL10As10g23957 Beta vulgaris HOM05D009145 ORTHO05D000140 2.3e-17 93.2 180 31.1
AUR62025826 Chenopodium quinoa HOM05D000034 ORTHO05D000037 2.3e-17 93.2 157 38.2
Glyma.11G158600 Glycine max HOM05D000665 ORTHO05D000140 3.0e-17 92.8 180 35.6
AUR62024279 Chenopodium quinoa HOM05D009145 ORTHO05D000140 3.9e-17 92.4 153 37.3
COL.COLO4_34387 Corchorus olitorius HOM05D009145 ORTHO05D000140 6.7e-17 91.7 180 33.3
AUR62031358 Chenopodium quinoa HOM05D009145 ORTHO05D000140 2.0e-16 90.1 152 36.8
EL10Ac8g18839 Beta vulgaris HOM05D002420 ORTHO05D002422 9.7e-16 87.8 172 33.1
Glyma.02G156600 Glycine max HOM05D000665 ORTHO05D000140 9.7e-16 87.8 184 29.9
SGA_v2.0_scaffold88G27215 Striga asiatica HOM05D001383 ORTHO05D000309 1.3e-15 87.4 132 42.4
AUR62015057 Chenopodium quinoa HOM05D000034 ORTHO05D000037 1.7e-15 87.0 143 38.5
COL.COLO4_07541 Corchorus olitorius HOM05D000665 ORTHO05D000140 2.2e-15 86.7 201 32.8
Glyma.06G254400 Glycine max HOM05D000665 ORTHO05D000140 2.2e-15 86.7 180 33.9
Lj5g0014380 Lotus japonicus HOM05D000665 ORTHO05D000140 2.8e-15 86.3 177 35.6
AUR62033616 Chenopodium quinoa HOM05D009145 ORTHO05D000140 3.7e-15 85.9 167 32.9
Lj1g0005320 Lotus japonicus HOM05D000665 ORTHO05D000140 3.7e-15 85.9 177 35.6
EL10Ac5g11631 Beta vulgaris HOM05D009145 ORTHO05D000140 4.8e-15 85.5 139 37.4
COL.COLO4_20932 Corchorus olitorius HOM05D009145 ORTHO05D000140 4.8e-15 85.5 137 38.0
Lj6g0001109 Lotus japonicus HOM05D000665 ORTHO05D000140 8.2e-15 84.7 168 36.9
Prupe.1G245200 Prunus persica HOM05D000665 ORTHO05D000140 1.1e-14 84.3 190 31.1
Glyma.09G131700 Glycine max HOM05D000665 ORTHO05D000140 1.4e-14 84.0 180 33.3
SGA_v2.0_scaffold17G08136 Striga asiatica HOM05D009145 ORTHO05D000140 1.4e-14 84.0 195 31.8
COL.COLO4_08774 Corchorus olitorius HOM05D009145 ORTHO05D000140 3.1e-14 82.8 115 40.0
Lj1g0011582 Lotus japonicus HOM05D000665 ORTHO05D000140 3.1e-14 82.8 174 32.2
SGA_v2.0_scaffold152G36847 Striga asiatica HOM05D000665 ORTHO05D000140 4.1e-14 82.4 146 34.9
AUR62008634 Chenopodium quinoa HOM05D009145 ORTHO05D000140 5.3e-14 82.0 185 29.2
Glyma.08G025200 Glycine max HOM05D000665 ORTHO05D000140 2.0e-13 80.1 111 39.6
COL.COLO4_23750 Corchorus olitorius HOM05D009145 ORTHO05D029124 3.4e-13 79.3 132 37.9
Glyma.11G208100 Glycine max HOM05D000665 ORTHO05D000140 3.4e-13 79.3 180 31.7
Glyma.05G097200 Glycine max HOM05D000665 ORTHO05D000140 7.7e-13 78.2 161 32.3
Prupe.1G287900 Prunus persica HOM05D000665 ORTHO05D000140 2.2e-12 76.6 193 29.5
COL.COLO4_11921 Corchorus olitorius HOM05D000665 ORTHO05D000140 2.9e-12 76.3 194 32.0
Glyma.16G081300 Glycine max HOM05D000665 ORTHO05D000140 2.9e-12 76.3 184 28.8
COL.COLO4_38347 Corchorus olitorius HOM05D009145 ORTHO05D000140 3.8e-12 75.9 125 39.2
RcHm_v2.0_Chr2g0139691 Rosa chinensis HOM05D000665 ORTHO05D000140 3.8e-12 75.9 43 74.4
FvH4_1g20120 Fragaria vesca HOM05D000665 ORTHO05D000140 1.4e-11 73.9 195 30.8
Glyma.18G141600 Glycine max HOM05D000665 ORTHO05D000140 4.2e-11 72.4 184 26.6
Medtr7g102860 Medicago truncatula HOM05D000665 ORTHO05D000140 1.6e-10 70.5 181 28.7
Lj2g0022922 Lotus japonicus HOM05D000665 ORTHO05D000140 2.1e-10 70.1 177 33.3
Glyma.13G077400 Glycine max HOM05D000665 ORTHO05D000140 4.7e-10 68.9 169 31.4
TAR629G1231 Trochodendron aralioides HOM05D000665 ORTHO05D000140 7.9e-10 68.2 92 42.4
AUR62027532 Chenopodium quinoa HOM05D000034 ORTHO05D000037 1.0e-09 67.8 103 44.7
Hma1.2p1_0489F.1_g164000 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.0e-09 67.8 186 26.3
Prupe.7G027800 Prunus persica HOM05D000665 ORTHO05D000140 2.3e-09 66.6 146 30.1
Glyma.08G287150 Glycine max HOM05D000665 ORTHO05D000140 3.9e-09 65.9 65 49.2
HanXRQChr06g0168961 Helianthus annuus HOM05D000034 ORTHO05D000037 5.1e-09 65.5 188 27.1
Hma1.2p1_0664F.1_g199003 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 5.1e-09 65.5 110 35.5
Prupe.4G256700 Prunus persica HOM05D000665 ORTHO05D000140 5.1e-09 65.5 57 50.9
COL.COLO4_35899 Corchorus olitorius HOM05D000665 ORTHO05D000140 6.7e-09 65.1 102 40.2
FvH4_1g22560 Fragaria vesca HOM05D000034 ORTHO05D000037 6.7e-09 65.1 179 29.1
Prupe.6G167700 Prunus persica HOM05D000665 ORTHO05D000140 6.7e-09 65.1 107 36.4
Glyma.07G209700 Glycine max HOM05D000665 ORTHO05D000140 8.8e-09 64.7 108 36.1
Glyma.17G193900 Glycine max HOM05D000665 ORTHO05D000140 8.8e-09 64.7 143 31.5
Glyma.20G028300 Glycine max HOM05D000665 ORTHO05D000140 1.1e-08 64.3 65 49.2
Atru.chr4.1088 Acer truncatum HOM05D000034 ORTHO05D000037 2.0e-08 63.5 204 27.9
Atru.chr6.616 Acer truncatum HOM05D000034 ORTHO05D000037 2.0e-08 63.5 204 27.9
COL.COLO4_13013 Corchorus olitorius HOM05D000665 ORTHO05D000140 2.0e-08 63.5 73 47.9
FAN28G1917 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.0e-08 63.5 181 28.2
EL10Ac6g14410 Beta vulgaris HOM05D009145 ORTHO05D000140 2.6e-08 63.2 126 31.7
Hma1.2p1_2091F.1_g313856 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 2.6e-08 63.2 184 22.8
RcHm_v2.0_Chr6g0284621 Rosa chinensis HOM05D000034 ORTHO05D000277 2.6e-08 63.2 188 27.1
Hma1.2p1_0423F.1_g150230 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.3e-08 62.8 137 31.4
RcHm_v2.0_Chr6g0274461 Rosa chinensis HOM05D000034 ORTHO05D000277 3.3e-08 62.8 188 27.1
Aqoxy3G01675 Aquilegia oxysepala HOM05D000034 ORTHO05D000037 4.4e-08 62.4 156 30.8
FAN19G1575 Fragaria x ananassa HOM05D000665 ORTHO05D000140 5.7e-08 62.0 195 27.7
RcHm_v2.0_Chr1g0330381 Rosa chinensis HOM05D000665 ORTHO05D000140 5.7e-08 62.0 195 26.7
FAN27G2455 Fragaria x ananassa HOM05D001671 ORTHO05D000140 7.4e-08 61.6 175 26.9
RcHm_v2.0_Chr1g0343671 Rosa chinensis HOM05D000034 ORTHO05D000277 7.4e-08 61.6 189 28.0
Glyma.05G095200 Glycine max HOM05D000665 ORTHO05D000140 9.7e-08 61.2 65 49.2
QL01p014514 Quercus lobata HOM05D000034 ORTHO05D000277 9.7e-08 61.2 191 26.7
FvH4_7g00320 Fragaria vesca HOM05D000034 ORTHO05D000277 1.3e-07 60.8 173 28.9
Actinidia25084 Actinidia chinensis HOM05D009145 ORTHO05D000140 1.7e-07 60.5 71 49.3
AUR62034505 Chenopodium quinoa HOM05D009145 ORTHO05D000140 1.7e-07 60.5 82 35.4
FAN26G1049 Fragaria x ananassa HOM05D000665 ORTHO05D000140 1.7e-07 60.5 48 52.1
Hma1.2p1_0170F.1_g074960 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 1.7e-07 60.5 198 22.2
FAN25G0710 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.8e-07 59.7 181 25.4
Hma1.2p1_1398F.1_g280820 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 2.8e-07 59.7 198 22.2
Hma1.2p1_0529F.1_g173280 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 6.3e-07 58.5 191 21.5
Hma1.2p1_0081F.1_g042220 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 8.2e-07 58.2 191 28.3
MBI16_g18338_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 8.2e-07 58.2 184 29.9
Prupe.5G014200 Prunus persica HOM05D000665 ORTHO05D000140 8.2e-07 58.2 174 28.7
Atru.chr4.508 Acer truncatum HOM05D000034 ORTHO05D000277 1.1e-06 57.8 188 23.9
FvH4_1g28531 Fragaria vesca HOM05D000034 ORTHO05D000277 1.1e-06 57.8 179 30.2
Hma1.2p1_1104F.1_g257520 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.1e-06 57.8 191 24.1
FvH4_1g18411 Fragaria vesca HOM05D000034 ORTHO05D000277 1.4e-06 57.4 178 27.0
Nn1g01000 Nelumbo nucifera HOM05D001651 ORTHO05D000277 1.4e-06 57.4 131 30.5
RcHm_v2.0_Chr3g0485151 Rosa chinensis HOM05D000665 ORTHO05D000140 1.8e-06 57.0 64 43.8
FAN26G1288 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.4e-06 56.6 189 26.5
TAR376G0198 Trochodendron aralioides HOM05D000665 ORTHO05D000140 2.4e-06 56.6 60 45.0
Ah.08g221600 Amaranthus hybridus HOM05D000034 ORTHO05D000277 3.1e-06 56.2 106 32.1
Hma1.2p1_0035F.1_g021910 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.1e-06 56.2 198 23.7
Hma1.2p1_0744F.1_g211850 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 3.1e-06 56.2 191 22.5
Hma1.2p1_2091F.1_g313860 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 3.1e-06 56.2 191 20.4
MBI01_g10235_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.1e-06 56.2 208 25.5
AUR62023567 Chenopodium quinoa HOM05D000012 ORTHO05D000540 4.1e-06 55.8 96 37.5
FAN24G2067 Fragaria x ananassa HOM05D000034 ORTHO05D000277 4.1e-06 55.8 179 27.4
Aqoxy7G02014 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 5.3e-06 55.5 58 44.8
FAN25G0666 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.3e-06 55.5 171 26.3
Glyma.02G179401 Glycine max HOM05D000665 ORTHO05D000140 5.3e-06 55.5 124 31.5
Glyma.03G069900 Glycine max HOM05D000665 ORTHO05D000140 5.3e-06 55.5 47 48.9
Hma1.2p1_2109F.1_g314220 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 5.3e-06 55.5 191 21.5
Lj1g0021510 Lotus japonicus HOM05D000034 ORTHO05D000277 5.3e-06 55.5 120 30.0
Lj5g0006139 Lotus japonicus HOM05D000034 ORTHO05D000277 5.3e-06 55.5 120 30.0
CANSAT01G2074 Cannabis sativa HOM05D000034 ORTHO05D000277 7.0e-06 55.1 185 30.3
RcHm_v2.0_Chr1g0373591 Rosa chinensis HOM05D000034 ORTHO05D000277 7.0e-06 55.1 179 26.3
DCAR_018898 Daucus carota HOM05D001651 ORTHO05D000277 9.1e-06 54.7 200 29.0
ECA233G2230 Erigeron canadensis HOM05D000034 ORTHO05D000037 9.1e-06 54.7 188 23.9
Hma1.2p1_0127F.1_g059736 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 9.1e-06 54.7 198 23.2
Hma1.2p1_0286F.1_g113985 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 9.1e-06 54.7 198 23.2
Lsat_1_v5_gn_6_26421 Lactuca sativa HOM05D000034 ORTHO05D000277 9.1e-06 54.7 188 22.9


User provided reference genes

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