Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 2.0e-206 722.2 369 100.0
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 1.1e-196 689.9 369 95.1
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 5.0e-194 681.0 389 90.7
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.5e-193 679.5 389 90.7
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.2e-187 659.8 389 89.2
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 3.7e-173 611.7 355 88.2
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 1.2e-163 580.1 377 80.9
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 7.6e-158 560.8 373 78.0
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 3.8e-157 558.5 377 79.3
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 3.2e-156 555.4 361 78.7
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 4.2e-156 555.1 371 77.1
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 3.5e-155 552.0 375 77.6
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.3e-154 550.1 336 81.8
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.3e-154 550.1 336 81.8
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 1.3e-154 550.1 336 81.8
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 3.9e-154 548.5 358 78.8
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 8.7e-154 547.4 333 82.0
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 1.1e-153 547.0 351 78.6
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.1e-153 547.0 354 79.4
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 3.3e-153 545.4 356 78.7
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 9.6e-153 543.9 368 76.4
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 9.6e-153 543.9 345 79.4
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.6e-152 543.1 358 78.8
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.1e-151 540.4 377 75.6
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 9.0e-151 537.3 368 75.3
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.5e-150 536.6 362 77.6
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 3.4e-150 535.4 361 77.3
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 1.3e-149 533.5 342 80.4
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 1.7e-149 533.1 322 83.5
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 2.2e-149 532.7 375 77.1
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 3.8e-149 531.9 359 76.6
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 6.4e-149 531.2 351 77.8
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 8.4e-149 530.8 315 83.8
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.4e-148 530.0 370 73.5
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 4.2e-148 528.5 375 75.2
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 9.3e-148 527.3 375 75.5
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.6e-147 526.6 366 74.6
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 1.6e-147 526.6 365 75.3
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 3.5e-147 525.4 367 74.9
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 4.6e-147 525.0 368 75.0
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 1.0e-146 523.9 338 79.0
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.3e-146 522.7 319 80.9
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 2.3e-146 522.7 361 76.7
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 3.9e-146 521.9 366 75.7
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 3.9e-146 521.9 366 74.0
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 5.1e-146 521.5 362 75.1
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 6.7e-146 521.2 377 73.7
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 2.1e-144 516.2 362 74.3
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 4.8e-144 515.0 357 75.6
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 1.1e-143 513.8 341 78.0
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 2.4e-143 512.7 381 71.4
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 2.4e-143 512.7 371 73.9
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 6.9e-143 511.1 358 75.1
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 3.4e-142 508.8 320 80.9
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 5.8e-142 508.1 357 73.7
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 4.9e-141 505.0 360 73.3
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 8.4e-141 504.2 365 73.7
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 1.1e-140 503.8 360 73.1
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 5.5e-140 501.5 362 71.5
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 1.2e-139 500.4 320 79.7
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 3.5e-139 498.8 364 69.5
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 3.5e-139 498.8 360 73.1
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 2.3e-138 496.1 336 74.7
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 2.3e-138 496.1 371 71.2
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 6.7e-138 494.6 331 74.6
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 6.7e-138 494.6 299 80.6
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.5e-137 493.4 366 70.5
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.9e-137 493.0 365 71.0
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 1.9e-137 493.0 367 71.4
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 1.4e-135 486.9 283 85.9
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.4e-135 486.9 352 70.7
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 1.8e-135 486.5 367 70.0
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.8e-135 486.5 375 68.5
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 2.4e-135 486.1 344 71.8
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 2.4e-135 486.1 360 69.2
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 5.3e-135 485.0 328 73.5
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 1.2e-134 483.8 472 60.0
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 1.5e-134 483.4 365 70.1
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 4.5e-134 481.9 332 75.3
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 7.6e-134 481.1 351 70.9
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 2.2e-133 479.6 337 72.4
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 7.1e-132 474.6 355 69.0
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 2.1e-131 473.0 372 68.3
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 2.1e-131 473.0 371 68.2
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 4.6e-131 471.9 372 68.0
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 1.0e-130 470.7 367 69.2
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 1.0e-130 470.7 323 73.4
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 1.3e-130 470.3 372 66.1
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 1.3e-130 470.3 367 68.9
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.9e-129 466.5 376 65.7
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 4.3e-129 465.3 368 67.4
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 1.3e-128 463.8 367 67.8
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 2.2e-128 463.0 370 68.6
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 3.7e-128 462.2 311 73.3
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 3.7e-128 462.2 328 74.7
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 1.4e-127 460.3 317 73.5
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 5.3e-127 458.4 357 65.8
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 1.2e-126 457.2 379 65.2
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.5e-126 456.8 328 72.6
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 4.5e-126 455.3 354 68.1
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 1.7e-125 453.4 364 63.7
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 8.5e-125 451.1 365 66.6
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.5e-124 449.5 321 71.7
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 3.2e-124 449.1 356 65.2
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 4.2e-124 448.7 301 75.1
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 5.5e-124 448.4 360 63.9
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 5.5e-124 448.4 365 65.2
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 2.1e-123 446.4 350 66.6
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 2.1e-123 446.4 329 67.5
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 2.1e-123 446.4 365 64.7
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 2.1e-123 446.4 365 64.7
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 3.6e-123 445.7 365 64.9
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 1.8e-122 443.4 366 64.5
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 3.9e-122 442.2 349 65.6
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 5.1e-122 441.8 324 71.6
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 1.1e-121 440.7 357 64.1
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 1.5e-121 440.3 349 64.2
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 5.7e-121 438.3 330 67.3
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 9.7e-121 437.6 329 67.8
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 1.3e-120 437.2 381 63.0
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 1.5e-118 430.3 362 60.5
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 1.5e-118 430.3 361 61.5
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 1.3e-117 427.2 333 66.4
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 6.5e-117 424.9 360 61.4
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 4.2e-116 422.2 357 62.5
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 4.2e-116 422.2 357 62.5
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 1.2e-115 420.6 357 61.9
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.0e-114 417.5 231 92.2
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 1.8e-114 416.8 357 61.6
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.3e-114 416.4 277 76.2
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 4.4e-113 412.1 359 61.8
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 9.7e-113 411.0 317 63.4
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 5.5e-108 395.2 343 61.2
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 3.3e-105 386.0 320 65.3
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 2.8e-104 382.9 348 58.9
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 7.2e-100 368.2 264 67.8
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 9.4e-100 367.9 467 49.9
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 1.2e-94 350.9 287 67.2
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 1.7e-93 347.1 214 82.7
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 2.5e-92 343.2 302 56.0
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 3.0e-90 336.3 258 64.7
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 5.7e-89 332.0 315 55.2
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 3.1e-87 326.2 363 50.1
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 1.0e-85 321.2 271 59.0
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 3.3e-84 316.2 349 50.4
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 7.2e-84 315.1 239 72.0
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 4.0e-82 309.3 207 74.9
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 8.3e-80 301.6 219 70.8
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 5.4e-79 298.9 195 76.9
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 1.9e-76 290.4 218 69.7
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 1.6e-75 287.3 283 57.6
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 4.3e-68 262.7 294 47.3
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.4e-55 220.3 132 82.6
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 5.2e-50 202.6 139 75.5
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.2e-49 201.4 176 63.1
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 9.9e-49 198.4 141 73.0
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.1e-39 168.3 172 53.5
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 2.4e-39 167.2 115 69.6
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 8.4e-32 142.1 108 66.7
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.4e-23 114.8 91 57.1
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 1.6e-22 111.3 271 28.0
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 4.1e-18 96.7 363 25.6


User provided reference genes

Program Settings