Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0052031 Rosa chinensis HOM05D001083 ORTHO05D026514 1.1e-43 179.5 87 100.0
RcHm_v2.0_Chr6g0245801 Rosa chinensis HOM05D001083 ORTHO05D026514 1.3e-28 129.4 61 100.0
RcHm_v2.0_Chr7g0237271 Rosa chinensis HOM05D001083 ORTHO05D026514 4.7e-26 120.9 61 93.4
RcHm_v2.0_Chr7g0237251 Rosa chinensis HOM05D001083 ORTHO05D006562 2.3e-25 118.6 59 94.9
RcHm_v2.0_Chr7g0237321 Rosa chinensis HOM05D001083 ORTHO05D006562 2.3e-25 118.6 59 94.9
FvH4_5g35680 Fragaria vesca HOM05D001083 ORTHO05D006562 5.2e-25 117.5 59 93.2
FAN04G2240 Fragaria x ananassa HOM05D001083 ORTHO05D006562 5.2e-25 117.5 59 93.2
FAN08G3511 Fragaria x ananassa HOM05D001083 ORTHO05D006562 5.2e-25 117.5 59 93.2
FAN13G1737 Fragaria x ananassa HOM05D001083 ORTHO05D006562 5.2e-25 117.5 59 93.2
FAN18G1491 Fragaria x ananassa HOM05D001083 ORTHO05D006562 5.2e-25 117.5 59 93.2
Cc10_g15670 Coffea canephora HOM05D001083 ORTHO05D006562 6.8e-25 117.1 59 91.5
RcHm_v2.0_Chr7g0237311 Rosa chinensis HOM05D001083 ORTHO05D006562 6.8e-25 117.1 59 93.2
Lsat_1_v5_gn_9_74041 Lactuca sativa HOM05D001083 ORTHO05D006562 1.2e-24 116.3 61 86.9
SalBow2G2226 Salvia bowleyana HOM05D001083 ORTHO05D006562 1.2e-24 116.3 59 91.5
Eucgr.F02133 Eucalyptus grandis HOM05D001083 ORTHO05D006562 2.0e-24 115.5 59 89.8
Aqoxy5G01325 Aquilegia oxysepala HOM05D001083 ORTHO05D006562 2.6e-24 115.2 59 89.8
Cfa013696 Carpinus fangiana HOM05D001083 ORTHO05D001637 2.6e-24 115.2 59 89.8
CDE10G0373 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 2.6e-24 115.2 59 89.8
CDE10G1263 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 2.6e-24 115.2 59 89.8
Haze_22337 Corylus avellana HOM05D001083 ORTHO05D006562 2.6e-24 115.2 59 89.8
DCAR_009571 Daucus carota HOM05D001083 ORTHO05D006562 2.6e-24 115.2 59 89.8
ECA232G1336 Erigeron canadensis HOM05D001083 ORTHO05D006562 2.6e-24 115.2 59 89.8
Lalb_Chr08g0242431 Lupinus albus HOM05D001083 ORTHO05D006562 2.6e-24 115.2 59 88.1
Nn5g29925 Nelumbo nucifera HOM05D001083 ORTHO05D001637 2.6e-24 115.2 59 89.8
QL09p017286 Quercus lobata HOM05D001083 ORTHO05D006562 2.6e-24 115.2 59 89.8
Ah.05g170690 Amaranthus hybridus HOM05D001083 ORTHO05D006562 3.4e-24 114.8 59 88.1
CSS0034477 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 3.4e-24 114.8 59 89.8
CSS0045493 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 3.4e-24 114.8 59 89.8
Ca_05403_v3 Cicer arietinum L. HOM05D001083 ORTHO05D006562 3.4e-24 114.8 59 86.4
Phvul.008G180200 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 3.4e-24 114.8 59 86.4
Psat2g066440 Pisum sativum HOM05D001083 ORTHO05D006562 3.4e-24 114.8 59 86.4
Rhsim06G0073600 Rhododendron simsii HOM05D001083 ORTHO05D006562 3.4e-24 114.8 59 89.8
SGA_v2.0_scaffold28G11891 Striga asiatica HOM05D001083 ORTHO05D006562 3.4e-24 114.8 59 88.1
TPR.G28355 Trifolium pratense HOM05D001083 ORTHO05D006562 3.4e-24 114.8 59 86.4
vmacro21321 Vaccinium macrocarpon HOM05D001083 ORTHO05D006562 3.4e-24 114.8 59 89.8
VMungo0647G1287 Vigna mungo HOM05D001083 ORTHO05D006562 3.4e-24 114.8 59 86.4
CiPaw.07G167500 Carya illinoinensis HOM05D001083 ORTHO05D006562 4.4e-24 114.4 59 88.1
Thecc.08G068600 Theobroma cacao HOM05D001083 ORTHO05D006562 4.4e-24 114.4 59 88.1
Actinidia30816 Actinidia chinensis HOM05D001083 ORTHO05D006562 5.8e-24 114.0 59 88.1
ATR0022G035 Amborella trichopoda HOM05D001083 ORTHO05D006562 5.8e-24 114.0 59 88.1
Migut.N02863 Erythranthe guttata HOM05D001083 ORTHO05D006562 5.8e-24 114.0 59 89.8
Glyma.04G092400 Glycine max HOM05D001083 ORTHO05D006562 5.8e-24 114.0 59 86.4
Glyma.06G094300 Glycine max HOM05D001083 ORTHO05D006562 5.8e-24 114.0 59 86.4
Lj1g0024653 Lotus japonicus HOM05D001083 ORTHO05D006562 5.8e-24 114.0 59 86.4
LjContig00408g0023356 Lotus japonicus HOM05D001083 ORTHO05D006562 5.8e-24 114.0 59 84.7
Oeu016836.1 Olea europaea HOM05D001083 ORTHO05D006562 5.8e-24 114.0 59 88.1
Phvul.009G143550 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 5.8e-24 114.0 59 86.4
VMungo1309G2048 Vigna mungo HOM05D001083 ORTHO05D006562 5.8e-24 114.0 59 86.4
ClCG08G011800 Citrullus lanatus HOM05D001083 ORTHO05D006562 7.5e-24 113.6 59 86.4
MELO3C011104.2 Cucumis melo HOM05D001083 ORTHO05D006562 7.5e-24 113.6 59 86.4
CsaV3_2G030420 Cucumis sativus L. HOM05D001083 ORTHO05D006562 7.5e-24 113.6 59 86.4
MD15G1382200 Malus domestica HOM05D001083 ORTHO05D006562 7.5e-24 113.6 59 88.1
Nitab4.5_0003300g0010 Nicotiana tabacum HOM05D001083 ORTHO05D006562 7.5e-24 113.6 59 88.1
PGR031G0272 Punica granatum HOM05D001083 ORTHO05D006562 7.5e-24 113.6 59 86.4
Sed0007911 Sechium edule HOM05D001083 ORTHO05D006562 7.5e-24 113.6 59 86.4
Solyc04g076090.3 Solanum lycopersicum HOM05D001083 ORTHO05D006562 7.5e-24 113.6 59 88.1
Sopen00g007090 Solanum pennellii HOM05D001083 ORTHO05D006562 7.5e-24 113.6 59 88.1
PGSC0003DMG400012910 Solanum tuberosum HOM05D001083 ORTHO05D006562 7.5e-24 113.6 59 88.1
Nn1g05517 Nelumbo nucifera HOM05D001083 ORTHO05D006562 9.9e-24 113.2 59 88.1
Nitab4.5_0000131g0420 Nicotiana tabacum HOM05D001083 ORTHO05D006562 9.9e-24 113.2 59 88.1
Peaxi162Scf00281g00319 Petunia axillaris HOM05D001083 ORTHO05D006562 9.9e-24 113.2 59 86.4
Prupe.1G528400 Prunus persica HOM05D001083 ORTHO05D006562 9.9e-24 113.2 59 91.5
THA.LOC104800044 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 9.9e-24 113.2 59 84.7
TAR625G0337 Trochodendron aralioides HOM05D001083 ORTHO05D006562 9.9e-24 113.2 59 86.4
HPP92_024674 Vanilla planifolia HOM05D001083 ORTHO05D006562 9.9e-24 113.2 59 86.4
Atru.chr13.1040 Acer truncatum HOM05D001083 ORTHO05D006562 1.3e-23 112.8 59 86.4
CAN.G1375.13 Capsicum annuum HOM05D001083 ORTHO05D006562 1.3e-23 112.8 59 86.4
Ciclev10000603m.g Citrus clementina HOM05D001083 ORTHO05D006562 1.3e-23 112.8 59 86.4
Glyma.02G212600 Glycine max HOM05D001083 ORTHO05D006562 1.3e-23 112.8 59 84.7
TAR381G0639 Trochodendron aralioides HOM05D001083 ORTHO05D006562 1.3e-23 112.8 59 86.4
GSVIVG01009147001 Vitis vinifera HOM05D001083 ORTHO05D006562 1.3e-23 112.8 59 86.4
Dinv42631 Davidia involucrata HOM05D001083 ORTHO05D006562 1.7e-23 112.5 59 86.4
Gohir.A06G032624 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.7e-23 112.5 59 86.4
Gohir.D06G032300 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.7e-23 112.5 59 86.4
Gorai.010G035600 Gossypium raimondii HOM05D001083 ORTHO05D006562 1.7e-23 112.5 59 86.4
HanXRQChr09g0250891 Helianthus annuus HOM05D001083 ORTHO05D006562 1.7e-23 112.5 59 88.1
Sed0003733 Sechium edule HOM05D001083 ORTHO05D006562 1.7e-23 112.5 59 84.7
Hund16868 Selenicereus undatus HOM05D001083 ORTHO05D006562 1.7e-23 112.5 59 86.4
arahy.Tifrunner.gnm1.ann1.4HU4LR Arachis hypogaea HOM05D001083 ORTHO05D006562 2.2e-23 112.1 59 84.7
arahy.Tifrunner.gnm1.ann1.R1F113 Arachis hypogaea HOM05D001083 ORTHO05D006562 2.2e-23 112.1 59 84.7
Dinv44842 Davidia involucrata HOM05D001083 ORTHO05D006562 2.2e-23 112.1 58 87.9
THA.LOC104806836 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 2.2e-23 112.1 59 83.1
MSTRG.22176 Avicennia marina HOM05D001083 ORTHO05D006562 2.9e-23 111.7 58 87.9
Carub.0007s1644 Capsella rubella HOM05D001083 ORTHO05D006562 2.9e-23 111.7 58 84.5
MD08G1194100 Malus domestica HOM05D001083 ORTHO05D006562 2.9e-23 111.7 59 86.4
Pp3c27_3970 Physcomitrium patens HOM05D001083 ORTHO05D006562 2.9e-23 111.7 59 88.1
Aa31LG4G9700 Aethionema arabicum HOM05D001083 ORTHO05D006562 3.7e-23 111.3 59 83.1
Potri.002G104000 Populus trichocarpa HOM05D001083 ORTHO05D006562 3.7e-23 111.3 59 84.7
Sp7g22610 Schrenkiella parvula HOM05D001083 ORTHO05D006562 3.7e-23 111.3 58 84.5
TAR381G1629 Trochodendron aralioides HOM05D001083 ORTHO05D006562 3.7e-23 111.3 59 84.7
unitig_578.g16183 Utricularia gibba HOM05D001083 ORTHO05D006562 3.7e-23 111.3 60 85.0
BcaC06g32870 Brassica carinata HOM05D001083 ORTHO05D006562 4.9e-23 110.9 58 84.5
BcaC09g50847 Brassica carinata HOM05D001083 ORTHO05D006562 4.9e-23 110.9 58 84.5
BcaNung04959 Brassica carinata HOM05D001083 ORTHO05D006562 4.9e-23 110.9 58 84.5
A01p15970 Brassica napus HOM05D001083 ORTHO05D006562 4.9e-23 110.9 58 84.5
A03p55440 Brassica napus HOM05D001083 ORTHO05D006562 4.9e-23 110.9 58 84.5
C01p19950 Brassica napus HOM05D001083 ORTHO05D006562 4.9e-23 110.9 58 84.5
C07p53730 Brassica napus HOM05D001083 ORTHO05D006562 4.9e-23 110.9 58 84.5
BolC1t01923H Brassica oleracea HOM05D001083 ORTHO05D006562 4.9e-23 110.9 58 84.5
BolC7t45864H Brassica oleracea HOM05D001083 ORTHO05D006562 4.9e-23 110.9 58 84.5
BraA01t01531Z Brassica rapa HOM05D001083 ORTHO05D006562 4.9e-23 110.9 58 84.5
BraA03t14618Z Brassica rapa HOM05D001083 ORTHO05D006562 4.9e-23 110.9 58 84.5
Cpa.g.sc309.3 Carica papaya HOM05D001083 ORTHO05D006562 4.9e-23 110.9 59 84.7
Thhalv10024695m.g Eutrema salsugineum HOM05D001083 ORTHO05D006562 4.9e-23 110.9 58 84.5
Gohir.A05G220900 Gossypium hirsutum HOM05D001083 ORTHO05D006562 4.9e-23 110.9 59 84.7
Gorai.009G230800 Gossypium raimondii HOM05D001083 ORTHO05D006562 4.9e-23 110.9 59 84.7
Lj4C734G7 Lonicera japonica HOM05D001083 ORTHO05D006562 4.9e-23 110.9 59 86.4
SGA_v2.0_scaffold48G17819 Striga asiatica HOM05D001083 ORTHO05D006562 4.9e-23 110.9 58 86.2
TWI36G0898 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 4.9e-23 110.9 59 83.1
Sabra02G0081500 Salix brachista HOM05D001083 ORTHO05D006562 6.4e-23 110.5 59 84.7
SEGI_39500 Sequoiadendron giganteum HOM05D001083 ORTHO05D006562 6.4e-23 110.5 59 86.4
Sc01g0001070 Simmondsia chinensis HOM05D001083 ORTHO05D006562 6.4e-23 110.5 59 84.7
AL7G28580 Arabidopsis lyrata HOM05D001083 ORTHO05D006562 8.3e-23 110.2 58 84.5
AT4G24620 Arabidopsis thaliana HOM05D001083 ORTHO05D006562 8.3e-23 110.2 58 84.5
EL10Ac1g01079 Beta vulgaris HOM05D001083 ORTHO05D006562 1.1e-22 109.8 59 83.1
Medtr5g065880 Medicago truncatula HOM05D001083 ORTHO05D006562 1.1e-22 109.8 59 83.1
Lalb_Chr11g0065091 Lupinus albus HOM05D001083 ORTHO05D006562 1.4e-22 109.4 59 84.7
MBI06_g36047_MAGBIO Magnolia biondii HOM05D001083 ORTHO05D006562 1.4e-22 109.4 59 86.4
CARHR232010 Cardamine hirsuta HOM05D001083 ORTHO05D006562 1.9e-22 109.0 58 82.8
CANSAT25G1784 Cannabis sativa HOM05D001083 ORTHO05D006562 2.4e-22 108.6 59 86.4
Manes.18G060600 Manihot esculenta HOM05D001083 ORTHO05D006562 3.2e-22 108.2 59 81.4
Os09g0465600 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 3.2e-22 108.2 59 83.1
PSO017G5756 Papaver somniferum HOM05D001083 ORTHO05D006562 3.2e-22 108.2 59 83.1
PSO170G6218 Papaver somniferum HOM05D001083 ORTHO05D006562 3.2e-22 108.2 59 83.1
Zm00001eb315420 Zea mays HOM05D001083 ORTHO05D006562 3.2e-22 108.2 59 83.1
CANSAT80G2842 Cannabis sativa HOM05D001083 ORTHO05D006562 4.1e-22 107.8 59 84.7
TWI12G0831 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 5.4e-22 107.5 59 81.4
AUR62019023 Chenopodium quinoa HOM05D001083 ORTHO05D006562 7.1e-22 107.1 59 83.1
AUR62027860 Chenopodium quinoa HOM05D001083 ORTHO05D006562 7.1e-22 107.1 59 83.1
Zm00001eb101090 Zea mays HOM05D001083 ORTHO05D006562 7.1e-22 107.1 59 83.1
Duzib041G0775 Durio zibethinus HOM05D001083 ORTHO05D006562 9.2e-22 106.7 60 83.3
SMO115G0176 Selaginella moellendorffii HOM05D001083 ORTHO05D006562 9.2e-22 106.7 58 82.8
Gohir.D05G223666 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.2e-21 106.3 59 83.1
Manes.02G146400 Manihot esculenta HOM05D001083 ORTHO05D006562 1.2e-21 106.3 59 78.0
CSS0030378 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 2.1e-21 105.5 59 83.1
Mapoly0057s0092 Marchantia polymorpha HOM05D001083 ORTHO05D006562 3.5e-21 104.8 58 84.5
Pp3c16_3900 Physcomitrium patens HOM05D001083 ORTHO05D006562 8.6e-20 100.1 65 69.2
Os08g0478800 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 1.2e-16 89.7 59 72.9
SHI06379 Sapria himalayana HOM05D001083 ORTHO05D006562 2.0e-16 89.0 58 74.1
Actinidia29614 Actinidia chinensis HOM05D001083 ORTHO05D006562 6.6e-12 73.9 59 67.8
CSS0001719 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D112825 8.7e-12 73.6 45 73.3
Ah.16g104380 Amaranthus hybridus HOM05D001083 ORTHO05D026514 6.9e-09 63.9 49 65.3
Glyma.06G093000 Glycine max HOM05D001083 ORTHO05D006562 3.8e-07 58.2 34 79.4


User provided reference genes

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