Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 3485.7 1816 100.0
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 3328.5 1818 96.3
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 3220.6 1815 92.7
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 3206.0 1809 92.4
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 3155.5 1833 90.5
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 3142.1 1815 90.8
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2896.7 1814 83.1
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2876.3 1812 82.0
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2652.1 1819 75.1
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2623.2 1817 74.3
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2617.4 1805 74.2
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2597.0 1856 72.3
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2537.3 1813 72.5
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2535.8 1815 71.0
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2515.0 1816 71.4
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2494.2 1814 71.1
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2494.2 1813 70.7
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2493.4 1834 70.1
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2489.5 1834 70.0
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2484.5 1814 70.6
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2472.6 1816 70.4
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2464.5 1816 69.5
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2455.6 1814 70.0
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2445.6 1818 69.3
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2432.9 1812 69.7
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2424.4 1814 68.9
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2421.7 1811 69.5
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2419.4 1808 69.7
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2418.3 1803 69.2
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2410.6 1810 68.7
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2404.8 1816 69.0
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2399.8 1807 68.3
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2395.9 1805 67.5
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2379.4 1817 67.4
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2379.0 1815 67.4
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2377.4 1814 68.5
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2376.3 1816 68.3
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2373.6 1805 68.2
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2372.0 1809 66.9
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2367.0 1816 66.1
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2366.3 1828 67.2
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2365.1 1802 67.1
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2359.7 1806 65.8
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2358.2 1846 67.2
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2354.3 1810 66.0
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2345.1 1816 65.7
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2342.8 1813 65.7
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2339.7 1818 65.7
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2338.9 1809 66.3
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2314.3 1817 65.9
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2314.3 1814 65.9
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2311.6 1814 65.9
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2306.6 1804 65.5
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2305.4 2363 54.7
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2299.6 1798 67.3
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2289.6 1808 64.2
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2280.4 1810 64.8
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2279.6 1817 64.6
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2277.3 1815 64.5
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2273.8 1805 65.4
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2273.4 1810 65.4
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2271.1 1812 64.3
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2270.4 1812 64.1
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2268.0 1804 64.4
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2254.6 1819 63.9
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2254.6 1813 64.0
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2252.6 1810 63.9
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2244.5 1804 64.0
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2238.8 1985 59.5
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2220.3 1810 63.3
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2202.2 1823 62.5
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2197.5 1832 62.2
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2195.2 1837 62.0
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2181.4 1891 61.0
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2107.8 1808 60.5
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 2026.9 1817 58.0
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 2015.0 1501 67.6
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2009.2 1478 70.4
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1944.1 1394 71.7
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1880.1 1355 70.0
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1836.2 1324 70.5
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1835.1 1394 67.9
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1778.1 1348 69.4
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1755.0 1301 69.5
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1618.6 1870 47.2
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1607.0 1872 48.0
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1600.9 1341 64.5
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1586.6 1232 67.5
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1577.4 1832 48.1
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1535.0 1880 45.7
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1484.5 1150 66.5
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1439.9 1641 48.6
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1427.9 1099 66.8
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1330.5 1351 55.6
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1295.8 1115 59.6
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1151.0 1053 58.0
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1130.9 905 62.7
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 3.6e-285 986.1 1681 36.1
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.2e-280 971.1 886 57.1
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 4.9e-258 896.0 1729 34.7
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 5.1e-239 832.8 1732 33.9
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 4.8e-237 826.2 636 66.7
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 2.1e-232 810.8 781 55.3
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 9.4e-209 732.3 599 65.8
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 6.9e-204 716.1 512 71.5
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 1.2e-179 635.6 455 71.4
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 1.2e-179 635.6 666 51.4
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 8.8e-175 619.4 2011 27.5
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 1.1e-172 612.5 454 70.5
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 6.4e-157 560.1 456 67.1
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 4.1e-156 557.4 451 67.2
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.6e-155 553.9 510 56.3
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 6.6e-154 550.1 371 79.8
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.8e-144 518.1 347 75.5
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 3.1e-135 488.0 315 76.5
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 2.4e-119 435.3 825 36.7
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 7.9e-107 393.7 1600 24.4
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 1.8e-98 365.9 281 64.8
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 1.5e-94 352.8 282 63.1
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.5e-89 336.3 284 59.9
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 7.7e-78 297.4 161 88.2
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 7.0e-71 274.2 287 49.5
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 1.7e-64 253.1 190 65.8
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 8.5e-61 240.7 339 45.4
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 4.2e-60 238.4 342 37.7
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.8e-56 225.7 206 56.3
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 1.4e-55 223.4 163 69.3
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 1.2e-49 203.8 191 53.4
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 1.8e-47 196.4 327 41.9
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 7.8e-46 191.0 147 67.3
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.1e-44 187.2 154 59.7
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 2.8e-43 182.6 287 41.8
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 4.0e-42 178.7 130 69.2
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 2.6e-41 176.0 177 58.2
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 4.4e-41 175.3 143 65.7
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 9.8e-41 174.1 241 47.3
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 3.9e-37 162.2 221 43.0
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 9.8e-33 147.5 167 53.9
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 2.2e-32 146.4 174 42.5
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 5.1e-29 135.2 114 64.0
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 4.3e-28 132.1 143 48.3
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 9.5e-28 131.0 153 45.1
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 8.9e-26 124.4 90 67.8
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 3.8e-24 119.0 78 78.2
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 4.9e-24 118.6 171 36.8
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 1.1e-23 117.5 75 74.7
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 6.0e-22 111.7 164 40.2
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 2.3e-21 109.8 104 54.8
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 3.9e-21 109.0 192 33.9
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 5.6e-20 105.1 90 58.9
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 5.2e-18 98.6 84 51.2
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 6.9e-18 98.2 212 31.6
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 5.8e-17 95.1 75 66.7
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 5.4e-15 88.6 75 68.0
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 2.7e-14 86.3 118 46.6
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 4.3e-12 79.0 55 65.5
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 4.8e-11 75.5 115 34.8
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 1.5e-09 70.5 60 53.3
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 1.7e-08 67.0 71 42.3
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.9e-07 63.5 117 33.3
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 4.6e-06 58.9 78 44.9
vmacro04080 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 4.6e-06 58.9 38 73.7


User provided reference genes

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