Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 1.3e-243 845.9 411 100.0
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 4.0e-168 595.1 349 81.1
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.7e-166 589.7 349 80.5
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 8.4e-166 587.4 373 76.1
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 7.1e-165 584.3 349 80.2
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 3.0e-147 525.8 398 65.1
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 5.9e-143 511.5 397 64.5
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 1.4e-123 447.2 368 61.1
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 4.9e-105 385.6 369 54.5
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 2.7e-95 353.2 368 49.7
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 6.0e-95 352.1 360 52.8
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 7.5e-90 335.1 374 48.1
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.7e-89 334.0 374 48.1
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.4e-88 330.9 374 47.6
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 3.2e-88 329.7 372 47.8
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 9.2e-88 328.2 415 44.8
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 1.6e-87 327.4 390 49.0
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 1.9e-85 320.5 381 45.4
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 1.2e-84 317.8 362 47.2
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 2.6e-82 310.1 361 45.7
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 1.7e-81 307.4 380 46.3
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 3.7e-81 306.2 480 40.4
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 4.6e-79 299.3 354 45.2
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 4.6e-79 299.3 373 45.0
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.3e-78 297.0 379 39.8
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 3.9e-78 296.2 371 44.2
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 8.6e-78 295.0 305 50.8
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 1.6e-76 290.8 355 46.2
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 4.7e-76 289.3 372 44.4
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 1.4e-75 287.7 345 46.7
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 1.8e-75 287.3 375 45.3
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 6.8e-75 285.4 384 38.8
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 2.6e-74 283.5 347 45.2
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 2.2e-73 280.4 387 40.6
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 2.2e-73 280.4 378 41.5
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 2.2e-73 280.4 345 44.3
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 8.4e-73 278.5 366 45.9
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 1.1e-72 278.1 360 42.5
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 1.9e-72 277.3 428 39.0
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 3.2e-72 276.6 352 45.5
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 3.5e-71 273.1 369 39.6
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 4.6e-71 272.7 371 39.9
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 1.0e-70 271.6 450 36.9
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 3.0e-70 270.0 363 39.4
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 5.1e-70 269.2 344 45.1
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.5e-69 267.7 448 38.6
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 1.5e-69 267.7 340 46.2
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 3.3e-69 266.5 349 44.1
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 4.3e-69 266.2 343 44.0
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 8.1e-68 261.9 367 39.0
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 2.4e-67 260.4 365 43.3
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 3.1e-67 260.0 369 42.5
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 4.0e-67 259.6 366 39.6
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 9.0e-67 258.5 357 42.3
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 3.4e-66 256.5 379 38.8
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 9.9e-66 255.0 370 38.4
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 8.4e-65 251.9 366 41.3
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.4e-64 251.1 360 40.6
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 2.7e-63 246.9 378 38.9
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 3.5e-63 246.5 349 39.5
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 3.5e-63 246.5 310 42.9
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 7.9e-63 245.4 373 40.8
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.0e-62 245.0 192 56.8
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 1.3e-62 244.6 312 44.9
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 1.7e-62 244.2 334 42.2
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.1e-61 241.5 177 61.6
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.1e-59 235.0 443 33.0
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 2.4e-59 233.8 384 39.1
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 1.5e-58 231.1 359 39.3
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 2.0e-58 230.7 369 35.0
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 3.4e-58 229.9 357 37.8
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 4.9e-57 226.1 296 42.6
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 4.2e-56 223.0 412 34.7
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 1.8e-54 217.6 302 40.4
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 5.1e-54 216.1 445 31.7
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 6.7e-54 215.7 375 33.3
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 8.7e-54 215.3 447 31.3
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 8.7e-54 215.3 334 38.6
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 1.5e-53 214.5 205 52.2
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 5.6e-53 212.6 175 54.9
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 4.8e-52 209.5 349 38.4
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 6.2e-52 209.1 177 54.2
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 2.4e-51 207.2 374 36.1
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 2.6e-50 203.8 190 52.1
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.9e-48 197.6 320 34.7
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.6e-47 194.5 341 33.7
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 1.6e-47 194.5 299 41.8
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.6e-47 194.5 340 34.7
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.7e-47 193.7 220 45.9
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 4.6e-47 193.0 194 48.5
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 6.0e-47 192.6 339 35.4
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 7.9e-47 192.2 211 42.7
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.8e-46 191.0 321 35.8
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 2.3e-46 190.7 261 41.4
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 1.1e-45 188.3 348 34.8
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 1.5e-45 188.0 325 37.8
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 1.5e-45 188.0 325 37.8
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 4.3e-45 186.4 321 37.7
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 4.3e-45 186.4 324 35.8
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 9.6e-45 185.3 363 33.6
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 1.3e-44 184.9 325 35.4
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.1e-44 184.1 217 43.8
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 1.4e-43 181.4 344 34.0
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 6.9e-43 179.1 386 32.4
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 9.0e-43 178.7 261 40.6
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 1.2e-42 178.3 196 42.9
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 1.5e-42 177.9 366 33.1
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 2.0e-42 177.6 348 34.5
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 4.5e-42 176.4 327 36.1
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 5.9e-42 176.0 156 55.1
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 2.2e-41 174.1 324 34.3
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 2.2e-41 174.1 175 45.7
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 3.8e-41 173.3 327 35.2
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 5.0e-41 172.9 364 34.6
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.4e-40 171.4 191 45.0
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 3.2e-40 170.2 341 30.8
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.1e-39 167.5 231 48.1
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 3.5e-39 166.8 180 48.3
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 4.6e-39 166.4 161 51.6
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 6.1e-39 166.0 346 34.1
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 2.3e-38 164.1 340 32.9
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 3.9e-38 163.3 325 34.5
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 5.1e-38 162.9 350 32.9
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 5.1e-38 162.9 340 32.6
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 1.1e-37 161.8 327 33.6
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 4.3e-37 159.8 327 33.3
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 1.3e-36 158.3 341 32.6
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 8.2e-36 155.6 184 42.9
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 8.2e-36 155.6 184 42.9
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 1.2e-34 151.8 269 33.8
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 2.6e-34 150.6 179 43.0
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 7.7e-34 149.1 184 42.4
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 1.1e-32 145.2 179 41.9
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 6.1e-31 139.4 267 34.5
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 6.1e-31 139.4 199 40.2
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 2.2e-28 131.0 142 44.4
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 2.8e-28 130.6 151 43.0
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 8.2e-28 129.0 184 39.1
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 1.4e-27 128.3 137 46.0
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.4e-27 128.3 262 32.1
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 1.5e-26 124.8 228 31.6
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.6e-26 124.0 106 54.7
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 1.3e-25 121.7 260 31.9
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 1.7e-25 121.3 135 43.7
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 1.9e-24 117.9 294 28.6
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 1.9e-24 117.9 294 28.6
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 7.2e-24 115.9 310 28.7
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 3.9e-22 110.2 97 50.5
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 8.8e-22 109.0 127 44.9
FvH4_3g26751 Fragaria vesca HOM05D003860 ORTHO05D004218 2.0e-21 107.8 93 63.4
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.7e-20 104.8 281 31.7
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-20 104.8 238 35.3
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 2.2e-20 104.4 201 31.8
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 2.2e-20 104.4 138 39.1
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 4.8e-20 103.2 168 35.1
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 1.4e-19 101.7 213 34.3
Ciclev10007055m.g Citrus clementina HOM05D003860 ORTHO05D004218 7.0e-19 99.4 120 48.3
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 2.6e-18 97.4 141 38.3
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 5.0e-17 93.2 242 32.2
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 1.1e-16 92.0 209 29.7
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 2.5e-16 90.9 73 57.5
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 4.0e-14 83.6 132 34.1
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 1.5e-13 81.6 49 65.3
Cpa.g.sc126.45 Carica papaya HOM05D003860 ORTHO05D004218 5.3e-11 73.2 95 46.3
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 1.5e-08 65.1 262 24.4
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 1.5e-08 65.1 262 24.4
COL.COLO4_16043 Corchorus olitorius HOM05D003860 ORTHO05D004218 1.4e-06 58.5 129 34.9
SalBow6G0760 Salvia bowleyana HOM05D003860 ORTHO05D004218 5.2e-06 56.6 48 50.0
SHI00611 Sapria himalayana HOM05D003860 ORTHO05D004218 8.8e-06 55.8 32 71.9


User provided reference genes

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