Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 7.5e-52 206.8 99 100.0
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 2.6e-36 155.2 99 78.8
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 7.3e-31 137.1 78 80.8
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 3.1e-21 105.1 72 72.2
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 6.8e-21 104.0 72 70.8
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 8.9e-21 103.6 72 70.8
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 8.9e-21 103.6 72 70.8
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 1.5e-20 102.8 72 69.4
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 2.0e-20 102.4 72 70.8
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.0e-20 102.4 72 69.4
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.0e-20 102.4 72 69.4
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.6e-20 102.1 72 69.4
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 3.4e-20 101.7 72 69.4
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 3.4e-20 101.7 72 69.4
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 4.4e-20 101.3 72 68.1
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 4.4e-20 101.3 72 70.8
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 4.4e-20 101.3 72 70.8
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 7.5e-20 100.5 72 68.1
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 7.5e-20 100.5 72 66.7
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 7.5e-20 100.5 72 69.4
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 9.8e-20 100.1 72 69.4
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 1.3e-19 99.8 72 69.4
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.3e-19 99.8 92 57.6
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.3e-19 99.8 72 68.1
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 1.3e-19 99.8 72 69.4
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 1.3e-19 99.8 72 66.7
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 1.3e-19 99.8 72 66.7
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.7e-19 99.4 72 66.7
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 2.2e-19 99.0 72 66.7
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 2.2e-19 99.0 72 68.1
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 2.9e-19 98.6 72 68.1
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 2.9e-19 98.6 72 65.3
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 2.9e-19 98.6 72 65.3
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 3.7e-19 98.2 72 68.1
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 3.7e-19 98.2 72 68.1
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 3.7e-19 98.2 72 66.7
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 3.7e-19 98.2 72 66.7
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 3.7e-19 98.2 72 68.1
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 4.9e-19 97.8 72 65.3
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 4.9e-19 97.8 72 65.3
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 4.9e-19 97.8 72 68.1
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 4.9e-19 97.8 72 69.4
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 4.9e-19 97.8 72 66.7
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 6.4e-19 97.4 72 66.7
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 6.4e-19 97.4 72 65.3
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 6.4e-19 97.4 72 63.9
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 6.4e-19 97.4 72 65.3
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 6.4e-19 97.4 72 68.1
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 8.3e-19 97.1 72 69.4
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 8.3e-19 97.1 72 69.4
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 8.3e-19 97.1 72 69.4
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 8.3e-19 97.1 72 66.7
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 8.3e-19 97.1 72 65.3
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 8.3e-19 97.1 72 65.3
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 8.3e-19 97.1 72 66.7
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 8.3e-19 97.1 72 66.7
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 1.1e-18 96.7 72 66.7
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 1.1e-18 96.7 72 68.1
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.4e-18 96.3 72 65.3
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 1.4e-18 96.3 72 66.7
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 1.9e-18 95.9 72 68.1
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.9e-18 95.9 72 69.4
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 2.4e-18 95.5 72 65.3
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 3.2e-18 95.1 72 65.3
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 3.2e-18 95.1 72 65.3
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 3.2e-18 95.1 72 66.7
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 3.2e-18 95.1 72 63.9
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 3.2e-18 95.1 72 66.7
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 3.2e-18 95.1 69 68.1
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 4.1e-18 94.7 69 69.6
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 4.1e-18 94.7 72 65.3
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 5.4e-18 94.4 72 65.3
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 7.0e-18 94.0 72 65.3
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 7.0e-18 94.0 72 65.3
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 7.0e-18 94.0 72 65.3
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 7.0e-18 94.0 72 65.3
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 7.0e-18 94.0 72 65.3
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 7.0e-18 94.0 72 63.9
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 7.0e-18 94.0 72 65.3
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 7.0e-18 94.0 72 63.9
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 7.0e-18 94.0 102 54.9
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 9.2e-18 93.6 72 65.3
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 9.2e-18 93.6 72 63.9
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 9.2e-18 93.6 72 63.9
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 9.2e-18 93.6 72 62.5
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 9.2e-18 93.6 72 65.3
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.2e-17 93.2 72 63.9
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 1.6e-17 92.8 72 65.3
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 1.6e-17 92.8 72 65.3
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 1.6e-17 92.8 72 65.3
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 1.6e-17 92.8 72 65.3
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 1.6e-17 92.8 72 65.3
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 1.6e-17 92.8 72 65.3
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 1.6e-17 92.8 72 65.3
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 1.6e-17 92.8 72 65.3
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 1.6e-17 92.8 72 62.5
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 1.6e-17 92.8 102 53.9
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 1.6e-17 92.8 102 53.9
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 2.0e-17 92.4 72 63.9
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 2.0e-17 92.4 72 63.9
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 2.0e-17 92.4 69 65.2
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 2.7e-17 92.0 72 63.9
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 2.7e-17 92.0 72 63.9
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 2.7e-17 92.0 72 63.9
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.7e-17 92.0 72 63.9
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 2.7e-17 92.0 72 63.9
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 3.5e-17 91.7 72 63.9
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 3.5e-17 91.7 69 66.7
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 3.5e-17 91.7 72 65.3
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 4.6e-17 91.3 72 65.3
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 6.0e-17 90.9 72 62.5
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 1.0e-16 90.1 72 63.9
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.3e-16 89.7 72 63.9
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 1.7e-16 89.4 72 63.9
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.7e-16 89.4 72 62.5
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.7e-16 89.4 65 66.2
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 1.7e-16 89.4 65 66.2
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 2.3e-16 89.0 72 62.5
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 5.0e-16 87.8 73 63.0
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 5.0e-16 87.8 72 61.1
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 8.6e-16 87.0 72 62.5
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 1.1e-15 86.7 72 56.9
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 2.5e-15 85.5 72 61.1
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 4.3e-15 84.7 60 68.3
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 1.6e-14 82.8 69 58.0
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.1e-14 82.4 66 62.1
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 3.6e-14 81.6 72 52.8
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 1.1e-13 80.1 69 53.6
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.8e-13 79.3 72 59.7
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.8e-13 79.3 69 56.5
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 1.5e-12 76.3 81 51.9
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 1.5e-12 76.3 69 50.7
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.6e-12 75.5 72 55.6
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 3.4e-12 75.1 69 58.0
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.8e-12 74.3 72 56.9
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 9.9e-12 73.6 40 80.0
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.9e-11 72.0 72 54.2
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 3.7e-11 71.6 40 77.5
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 1.4e-10 69.7 40 75.0
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 1.4e-10 69.7 40 72.5
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.1e-09 65.9 40 75.0
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 4.6e-09 64.7 44 59.1
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 3.9e-08 61.6 76 48.7
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 8.6e-08 60.5 103 36.9


User provided reference genes

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