Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 1.2e-182 643.3 392 100.0
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 3.6e-166 588.6 392 81.9
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 3.6e-166 588.6 392 82.1
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 2.5e-159 565.8 403 78.4
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 2.9e-131 472.6 410 71.2
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 9.3e-130 467.6 393 72.0
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 1.3e-126 457.2 464 66.4
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 2.4e-125 453.0 395 65.1
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 4.9e-123 445.3 413 63.9
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 3.2e-122 442.6 394 66.2
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 1.3e-120 437.2 392 66.1
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.5e-119 433.7 394 61.4
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 5.6e-119 431.8 390 64.1
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 6.2e-118 428.3 390 62.6
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 6.2e-118 428.3 390 61.8
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 8.1e-118 427.9 390 62.8
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 1.1e-117 427.6 397 62.0
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 1.8e-117 426.8 390 62.3
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.2e-116 424.1 392 60.5
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 2.6e-116 422.9 392 66.1
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 2.2e-115 419.9 396 62.6
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 6.5e-115 418.3 388 64.4
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.2e-113 414.1 395 61.5
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 1.0e-112 411.0 389 65.3
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 2.3e-112 409.8 378 63.8
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 3.9e-112 409.1 454 51.3
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 5.1e-112 408.7 398 56.3
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 6.7e-112 408.3 388 64.4
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 1.9e-111 406.8 399 61.7
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 2.8e-110 402.9 458 54.1
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 2.6e-108 396.4 398 56.5
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 2.6e-108 396.4 450 53.1
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 2.6e-108 396.4 408 55.9
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 4.5e-108 395.6 382 57.3
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 4.5e-108 395.6 403 59.6
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 1.3e-107 394.0 403 56.8
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 2.2e-107 393.3 388 63.9
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 6.5e-107 391.7 383 65.3
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 8.5e-107 391.3 366 62.8
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 8.5e-107 391.3 393 61.8
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 8.5e-107 391.3 396 55.6
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 8.5e-107 391.3 380 57.1
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 1.4e-106 390.6 380 61.8
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 1.4e-106 390.6 407 56.8
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 1.9e-106 390.2 380 57.9
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 4.2e-106 389.0 391 57.5
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 5.5e-106 388.7 376 62.0
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 5.5e-106 388.7 380 57.9
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 5.5e-106 388.7 388 58.8
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 9.3e-106 387.9 389 57.8
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 9.3e-106 387.9 390 57.4
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.6e-105 387.1 388 54.6
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 2.1e-105 386.7 377 60.7
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 4.6e-105 385.6 390 58.2
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 4.6e-105 385.6 406 55.7
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 7.9e-105 384.8 378 64.8
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 7.9e-105 384.8 406 60.6
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 1.8e-104 383.6 380 56.3
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 1.8e-104 383.6 416 55.3
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 1.8e-104 383.6 392 56.6
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 2.3e-104 383.3 388 58.0
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 2.3e-104 383.3 382 58.6
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 1.1e-103 380.9 379 58.8
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 4.3e-103 379.0 388 53.9
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 9.7e-103 377.9 370 59.7
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 1.3e-102 377.5 384 58.9
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 1.6e-102 377.1 380 60.3
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 2.2e-102 376.7 383 56.9
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 2.8e-102 376.3 391 55.5
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 3.7e-102 375.9 386 60.4
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 8.2e-102 374.8 390 54.9
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 2.4e-101 373.2 399 58.4
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 3.1e-101 372.9 399 63.2
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 4.1e-101 372.5 364 58.0
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.0e-100 370.2 393 55.7
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 4.5e-100 369.0 389 56.3
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 2.9e-99 366.3 391 54.7
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 2.9e-99 366.3 391 59.3
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 5.0e-99 365.5 383 56.9
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 1.4e-98 364.0 391 55.5
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 3.2e-98 362.8 395 55.7
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 3.2e-98 362.8 378 54.8
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 2.7e-97 359.8 391 55.2
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 6.1e-97 358.6 391 51.9
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 1.8e-96 357.1 364 63.7
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 3.9e-96 355.9 424 57.1
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 1.3e-94 350.9 389 53.7
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 3.7e-94 349.4 360 56.4
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 8.2e-94 348.2 352 58.8
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 5.3e-93 345.5 377 57.8
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 2.2e-91 340.1 374 50.8
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 3.8e-91 339.3 376 50.3
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 3.8e-91 339.3 391 49.9
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 8.5e-91 338.2 417 55.2
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 3.2e-90 336.3 389 50.4
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 7.2e-90 335.1 408 57.1
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 2.1e-89 333.6 335 63.0
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 5.2e-88 328.9 408 51.7
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 1.7e-86 323.9 456 54.8
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 8.2e-86 321.6 332 58.4
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 5.0e-83 312.4 620 36.0
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 3.2e-82 309.7 166 93.4
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 1.6e-81 307.4 334 54.8
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 2.9e-75 286.6 378 47.6
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 4.2e-74 282.7 389 44.5
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 1.1e-61 241.5 145 81.4
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 3.0e-56 223.4 135 79.3
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 3.0e-51 206.8 185 61.6
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 9.5e-50 201.8 397 40.1
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 4.4e-47 193.0 381 33.1
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 3.7e-46 189.9 382 34.3
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 1.9e-45 187.6 354 36.4
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 1.5e-42 177.9 112 76.8
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 8.1e-41 172.2 185 46.5
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 8.4e-30 135.6 228 35.1
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 6.0e-28 129.4 101 64.4
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 1.6e-25 121.3 182 37.9
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 6.2e-25 119.4 235 40.0
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 2.9e-22 110.5 209 33.0
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 2.7e-20 104.0 81 64.2
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 1.3e-19 101.7 58 84.5
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 3.0e-19 100.5 64 76.6
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 9.6e-18 95.5 178 34.8
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 2.4e-16 90.9 60 71.7
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 2.9e-14 84.0 64 65.6


User provided reference genes

Program Settings