Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0050331 Rosa chinensis HOM05D001916 ORTHO05D014280 3.1e-69 265.0 131 100.0
FvH4_7g30490 Fragaria vesca HOM05D001916 ORTHO05D003272 2.8e-14 82.4 46 84.8
FAN03G0032 Fragaria x ananassa HOM05D000050 ORTHO05D000771 2.8e-14 82.4 46 84.8
FAN06G1813 Fragaria x ananassa HOM05D001916 ORTHO05D003272 2.8e-14 82.4 46 84.8
FAN06G4606 Fragaria x ananassa HOM05D001916 ORTHO05D003272 2.8e-14 82.4 46 84.8
FAN10G0131 Fragaria x ananassa HOM05D001916 ORTHO05D003272 2.8e-14 82.4 46 84.8
FAN10G0799 Fragaria x ananassa HOM05D001916 ORTHO05D003272 2.8e-14 82.4 46 84.8
RcHm_v2.0_Chr1g0378891 Rosa chinensis HOM05D001916 ORTHO05D003272 3.7e-14 82.0 46 82.6
MD01G1210400 Malus domestica HOM05D001916 ORTHO05D003272 1.5e-12 76.6 68 55.9
CSS0039910 Camellia sinensis var. sinensis HOM05D001916 ORTHO05D003272 3.4e-12 75.5 48 70.8
Prupe.2G302800 Prunus persica HOM05D001916 ORTHO05D003272 3.4e-12 75.5 48 72.9
MD07G1280600 Malus domestica HOM05D001916 ORTHO05D003272 7.6e-12 74.3 46 76.1
Cpa.g.sc107.130 Carica papaya HOM05D001916 ORTHO05D003272 2.2e-11 72.8 46 71.7
Dinv28377 Davidia involucrata HOM05D001916 ORTHO05D003272 2.2e-11 72.8 46 71.7
GSVIVG01028818001 Vitis vinifera HOM05D001916 ORTHO05D003272 2.2e-11 72.8 46 71.7
Actinidia03143 Actinidia chinensis HOM05D001916 ORTHO05D003272 2.9e-11 72.4 46 71.7
Glyma.09G128800 Glycine max HOM05D001916 ORTHO05D003272 2.9e-11 72.4 46 69.6
Sabra04G0047000 Salix brachista HOM05D001916 ORTHO05D003272 2.9e-11 72.4 46 71.7
ECA238G4709 Erigeron canadensis HOM05D001916 ORTHO05D003272 3.8e-11 72.0 46 71.7
Gohir.A11G225202 Gossypium hirsutum HOM05D001916 ORTHO05D003272 3.8e-11 72.0 46 71.7
MSTRG.8696 Avicennia marina HOM05D001916 ORTHO05D003272 6.5e-11 71.2 48 66.7
Ca_18030_v3 Cicer arietinum L. HOM05D001916 ORTHO05D003272 8.4e-11 70.9 46 69.6
Cc02_g02210 Coffea canephora HOM05D001916 ORTHO05D003272 8.4e-11 70.9 46 69.6
Haze_00065 Corylus avellana HOM05D000100 ORTHO05D000052 8.4e-11 70.9 46 69.6
Eucgr.A02714 Eucalyptus grandis HOM05D001916 ORTHO05D003272 8.4e-11 70.9 46 67.4
Potri.017G149800 Populus trichocarpa HOM05D001916 ORTHO05D003272 8.4e-11 70.9 46 69.6
Rhsim09G0201200 Rhododendron simsii HOM05D001916 ORTHO05D003272 8.4e-11 70.9 46 67.4
EL10Ac3g05391 Beta vulgaris HOM05D001916 ORTHO05D003272 1.1e-10 70.5 46 71.7
COL.COLO4_30287 Corchorus olitorius HOM05D001916 ORTHO05D003272 1.1e-10 70.5 46 69.6
Duzib068G1100 Durio zibethinus HOM05D001916 ORTHO05D003272 1.1e-10 70.5 46 69.6
HanXRQChr13g0392421 Helianthus annuus HOM05D001916 ORTHO05D003272 1.1e-10 70.5 48 64.6
Peaxi162Scf00618g00626 Petunia axillaris HOM05D001916 ORTHO05D003272 1.1e-10 70.5 46 67.4
Sabra17G0124700 Salix brachista HOM05D001916 ORTHO05D003272 1.1e-10 70.5 46 69.6
unitig_52.g17724 Utricularia gibba HOM05D001916 ORTHO05D003272 1.1e-10 70.5 46 71.7
Actinidia31845 Actinidia chinensis HOM05D001916 ORTHO05D003272 1.4e-10 70.1 47 72.3
CAN.G204.27 Capsicum annuum HOM05D001916 ORTHO05D003272 1.4e-10 70.1 46 69.6
ClCG05G008510 Citrullus lanatus HOM05D001916 ORTHO05D003272 1.4e-10 70.1 46 71.7
MELO3C006948.2 Cucumis melo HOM05D001916 ORTHO05D003272 1.4e-10 70.1 46 71.7
Duzib205G0940 Durio zibethinus HOM05D001916 ORTHO05D003272 1.4e-10 70.1 46 71.7
Glyma.16G176200 Glycine max HOM05D001916 ORTHO05D003272 1.4e-10 70.1 46 67.4
Phvul.004G104600 Phaseolus vulgaris HOM05D001916 ORTHO05D003272 1.4e-10 70.1 46 67.4
TWI14G0889 Tripterygium wilfordii HOM05D001916 ORTHO05D003272 1.4e-10 70.1 46 65.2
VMungo0464G1486 Vigna mungo HOM05D001916 ORTHO05D003272 1.4e-10 70.1 46 67.4
Gohir.D11G231500 Gossypium hirsutum HOM05D001916 ORTHO05D003272 1.9e-10 69.7 46 69.6
Gorai.003G069500 Gossypium raimondii HOM05D001916 ORTHO05D003272 1.9e-10 69.7 46 69.6
SalBow4G2106 Salvia bowleyana HOM05D001916 ORTHO05D003272 1.9e-10 69.7 46 69.6
Sed0015019 Sechium edule HOM05D001916 ORTHO05D003272 1.9e-10 69.7 46 71.7
SGA_v2.0_scaffold10G05278 Striga asiatica HOM05D001916 ORTHO05D003272 1.9e-10 69.7 46 67.4
TWI59G0580 Tripterygium wilfordii HOM05D001916 ORTHO05D003272 1.9e-10 69.7 46 65.2
Migut.F00275 Erythranthe guttata HOM05D001916 ORTHO05D003272 2.5e-10 69.3 46 69.6
HanXRQChr14g0462581 Helianthus annuus HOM05D001916 ORTHO05D003272 2.5e-10 69.3 46 67.4
Lsat_1_v5_gn_2_131520 Lactuca sativa HOM05D001916 ORTHO05D003272 2.5e-10 69.3 46 67.4
Lj1C1007T6 Lonicera japonica HOM05D001916 ORTHO05D003272 2.5e-10 69.3 46 63.0
Hund11708 Selenicereus undatus HOM05D001916 ORTHO05D003272 2.5e-10 69.3 46 67.4
Thecc.03G186400 Theobroma cacao HOM05D001916 ORTHO05D003272 2.5e-10 69.3 46 67.4
Gohir.A12G253000 Gossypium hirsutum HOM05D001916 ORTHO05D003272 3.2e-10 68.9 46 65.2
Gohir.D08G109200 Gossypium hirsutum HOM05D001916 ORTHO05D003272 3.2e-10 68.9 46 69.6
Gohir.D12G255426 Gossypium hirsutum HOM05D001916 ORTHO05D003272 3.2e-10 68.9 46 65.2
Gohir.D12G255451 Gossypium hirsutum HOM05D001916 ORTHO05D003272 3.2e-10 68.9 46 65.2
Gorai.004G116900 Gossypium raimondii HOM05D001916 ORTHO05D003272 3.2e-10 68.9 46 69.6
Gorai.008G273400 Gossypium raimondii HOM05D001916 ORTHO05D003272 3.2e-10 68.9 46 65.2
Nitab4.5_0000472g0280 Nicotiana tabacum HOM05D001916 ORTHO05D003272 3.2e-10 68.9 46 69.6
Nitab4.5_0007653g0010 Nicotiana tabacum HOM05D001916 ORTHO05D003272 3.2e-10 68.9 46 69.6
Peaxi162Scf00444g00317 Petunia axillaris HOM05D001916 ORTHO05D003272 3.2e-10 68.9 46 69.6
Potri.004G071100 Populus trichocarpa HOM05D001916 ORTHO05D003272 3.2e-10 68.9 46 69.6
SGA_v2.0_scaffold55G19713 Striga asiatica HOM05D001916 ORTHO05D003272 3.2e-10 68.9 46 67.4
Ah.07g206400 Amaranthus hybridus HOM05D001916 ORTHO05D003272 4.2e-10 68.6 48 64.6
CiPaw.12G018800 Carya illinoinensis HOM05D001916 ORTHO05D003272 4.2e-10 68.6 46 67.4
CsaV3_3G017600 Cucumis sativus L. HOM05D001916 ORTHO05D003272 4.2e-10 68.6 46 69.6
Sc19g0000960 Simmondsia chinensis HOM05D001916 ORTHO05D003272 4.2e-10 68.6 46 69.6
Nn6g32459 Nelumbo nucifera HOM05D001916 ORTHO05D014280 5.5e-10 68.2 46 65.2
SalBow2G1297 Salvia bowleyana HOM05D001916 ORTHO05D003272 5.5e-10 68.2 46 67.4
AUR62021095 Chenopodium quinoa HOM05D001916 ORTHO05D003272 7.2e-10 67.8 46 65.2
Lj2g0006755 Lotus japonicus HOM05D001916 ORTHO05D003272 7.2e-10 67.8 46 65.2
Atru.ctg97_1.48 Acer truncatum HOM05D001916 ORTHO05D014280 9.3e-10 67.4 45 66.7
CAN.G126.17 Capsicum annuum HOM05D001916 ORTHO05D003272 9.3e-10 67.4 46 67.4
DCAR_010650 Daucus carota HOM05D001916 ORTHO05D003272 9.3e-10 67.4 45 71.1
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 9.3e-10 67.4 68 51.5
Hund04803 Selenicereus undatus HOM05D001916 ORTHO05D003272 9.3e-10 67.4 46 65.2
COL.COLO4_30633 Corchorus olitorius HOM05D001916 ORTHO05D003272 1.2e-09 67.0 46 65.2
Nn1g01692 Nelumbo nucifera HOM05D001916 ORTHO05D003272 1.2e-09 67.0 46 63.0
Psat0s1764g0040 Pisum sativum HOM05D001916 ORTHO05D003272 1.2e-09 67.0 56 58.9
Solyc03g007670.4 Solanum lycopersicum HOM05D001916 ORTHO05D003272 1.2e-09 67.0 46 67.4
Sopen03g003600 Solanum pennellii HOM05D001916 ORTHO05D003272 1.2e-09 67.0 46 67.4
PGSC0003DMG400020884 Solanum tuberosum HOM05D001916 ORTHO05D003272 1.2e-09 67.0 46 67.4
PGSC0003DMG400028904 Solanum tuberosum HOM05D001916 ORTHO05D003272 1.2e-09 67.0 46 65.2
CiPaw.06G004400 Carya illinoinensis HOM05D001916 ORTHO05D003272 1.6e-09 66.6 46 65.2
AUR62031443 Chenopodium quinoa HOM05D001916 ORTHO05D003272 1.6e-09 66.6 46 63.0
Lsat_1_v5_gn_8_6441 Lactuca sativa HOM05D001916 ORTHO05D003272 1.6e-09 66.6 48 60.4
Oeu009294.1 Olea europaea HOM05D001916 ORTHO05D003272 1.6e-09 66.6 48 62.5
PSO266G0044 Papaver somniferum HOM05D001916 ORTHO05D003272 1.6e-09 66.6 46 65.2
PSO384G3100 Papaver somniferum HOM05D001916 ORTHO05D003272 1.6e-09 66.6 46 65.2
PGR042G1296 Punica granatum HOM05D001916 ORTHO05D003272 1.6e-09 66.6 45 66.7
MSTRG.8480 Avicennia marina HOM05D001916 ORTHO05D003272 2.1e-09 66.2 48 62.5
CSS0028210 Camellia sinensis var. sinensis HOM05D001916 ORTHO05D003272 2.1e-09 66.2 48 58.3
HPP92_009818 Vanilla planifolia HOM05D001916 ORTHO05D003272 2.1e-09 66.2 48 60.4
Manes.06G153900 Manihot esculenta HOM05D001916 ORTHO05D003272 2.7e-09 65.9 46 67.4
Medtr6g053290 Medicago truncatula HOM05D001916 ORTHO05D003272 2.7e-09 65.9 46 63.0
Cfa016307 Carpinus fangiana HOM05D001916 ORTHO05D003272 3.5e-09 65.5 40 72.5
TAR636G2302 Trochodendron aralioides HOM05D001916 ORTHO05D003272 3.5e-09 65.5 46 63.0
CSS0006504 Camellia sinensis var. sinensis HOM05D001916 ORTHO05D003272 4.6e-09 65.1 46 60.9
CDE04G2043 Ceratophyllum demersum HOM05D001916 ORTHO05D003272 4.6e-09 65.1 46 63.0
ECA233G5919 Erigeron canadensis HOM05D001916 ORTHO05D003272 4.6e-09 65.1 53 56.6
Oeu036893.1 Olea europaea HOM05D001916 ORTHO05D003272 4.6e-09 65.1 47 61.7
Rhsim03G0192500 Rhododendron simsii HOM05D001916 ORTHO05D014280 4.6e-09 65.1 43 67.4
Rhsim03G0192600 Rhododendron simsii HOM05D001916 ORTHO05D003272 4.6e-09 65.1 43 67.4
Solyc06g036410.1 Solanum lycopersicum HOM05D001916 ORTHO05D014280 4.6e-09 65.1 43 65.1
Gohir.A08G085400 Gossypium hirsutum HOM05D001916 ORTHO05D003272 6.1e-09 64.7 46 65.2
Hma1.2p1_0327F.1_g126510 Hydrangea macrophylla HOM05D001916 ORTHO05D003272 6.1e-09 64.7 46 60.9
Hma1.2p1_1713F.1_g298910 Hydrangea macrophylla HOM05D001916 ORTHO05D003272 6.1e-09 64.7 46 60.9
TAR629G0046 Trochodendron aralioides HOM05D001916 ORTHO05D003272 6.1e-09 64.7 46 63.0
CDE10G0454 Ceratophyllum demersum HOM05D001916 ORTHO05D003272 7.9e-09 64.3 46 63.0
Lalb_Chr21g0305291 Lupinus albus HOM05D001916 ORTHO05D003272 7.9e-09 64.3 46 60.9
arahy.Tifrunner.gnm1.ann1.4FT00Z Arachis hypogaea HOM05D001916 ORTHO05D003272 1.0e-08 63.9 46 58.7
arahy.Tifrunner.gnm1.ann1.A992JM Arachis hypogaea HOM05D001916 ORTHO05D003272 1.0e-08 63.9 46 58.7
Ciclev10005190m.g Citrus clementina HOM05D001916 ORTHO05D003272 1.0e-08 63.9 46 63.0
vmacro09808 Vaccinium macrocarpon HOM05D001916 ORTHO05D003272 1.0e-08 63.9 47 63.8
TPR.G9167 Trifolium pratense HOM05D001916 ORTHO05D003272 1.3e-08 63.5 46 63.0
Migut.F01079 Erythranthe guttata HOM05D001916 ORTHO05D003272 1.8e-08 63.2 48 60.4
Sc25g0000720 Simmondsia chinensis HOM05D001916 ORTHO05D003272 1.8e-08 63.2 46 63.0
arahy.Tifrunner.gnm1.ann1.DRAR7X Arachis hypogaea HOM05D001916 ORTHO05D003272 2.3e-08 62.8 46 58.7
Migut.F01075 Erythranthe guttata HOM05D001916 ORTHO05D014280 2.3e-08 62.8 48 58.3
Migut.F01077 Erythranthe guttata HOM05D001916 ORTHO05D003272 2.3e-08 62.8 48 58.3
vmacro06613 Vaccinium macrocarpon HOM05D001916 ORTHO05D003272 2.3e-08 62.8 47 63.8
CANSAT21G0998 Cannabis sativa HOM05D001916 ORTHO05D003272 3.0e-08 62.4 56 51.8
CANSAT21G0043 Cannabis sativa HOM05D001916 ORTHO05D003272 3.9e-08 62.0 46 65.2
Dinv35270 Davidia involucrata HOM05D001916 ORTHO05D003272 3.9e-08 62.0 47 66.0
MBI06_g33537_MAGBIO Magnolia biondii HOM05D001916 ORTHO05D003272 3.9e-08 62.0 68 51.5
Actinidia27360 Actinidia chinensis HOM05D001916 ORTHO05D003272 5.1e-08 61.6 46 58.7
Glyma.10G230000 Glycine max HOM05D001916 ORTHO05D003272 5.1e-08 61.6 48 58.3
THA.LOC104814751 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 5.1e-08 61.6 46 58.7
TAR375G0777 Trochodendron aralioides HOM05D001916 ORTHO05D003272 6.7e-08 61.2 46 60.9
CANSAT21G1399 Cannabis sativa HOM05D001916 ORTHO05D003272 1.1e-07 60.5 46 65.2
unitig_0.g2466 Utricularia gibba HOM05D001916 ORTHO05D003272 1.1e-07 60.5 46 60.9
Rhsim07G0087100 Rhododendron simsii HOM05D001916 ORTHO05D003272 1.5e-07 60.1 46 56.5
Sed0008462 Sechium edule HOM05D001916 ORTHO05D003272 1.5e-07 60.1 46 58.7
Aa31LG6G6770 Aethionema arabicum HOM05D001916 ORTHO05D003272 1.9e-07 59.7 46 54.3
arahy.Tifrunner.gnm1.ann1.MU20M7 Arachis hypogaea HOM05D001916 ORTHO05D003272 1.9e-07 59.7 46 56.5
BcaB01g02704 Brassica carinata HOM05D001916 ORTHO05D003272 2.5e-07 59.3 47 59.6
BcaB01g01623 Brassica carinata HOM05D001916 ORTHO05D003272 3.3e-07 58.9 44 56.8
BcaC04g21121 Brassica carinata HOM05D001916 ORTHO05D003272 3.3e-07 58.9 46 56.5
Glyma.11G021000 Glycine max HOM05D001916 ORTHO05D003272 4.3e-07 58.5 48 54.2
Lj2A178T48 Lonicera japonica HOM05D001916 ORTHO05D003272 4.3e-07 58.5 46 56.5
QL02p033314 Quercus lobata HOM05D001916 ORTHO05D003272 4.3e-07 58.5 52 53.8
QL09p012344 Quercus lobata HOM05D001916 ORTHO05D003272 4.3e-07 58.5 45 62.2
QL93p0326_0012 Quercus lobata HOM05D001916 ORTHO05D003272 4.3e-07 58.5 52 53.8
Aa31LG9G10930 Aethionema arabicum HOM05D001916 ORTHO05D003272 5.7e-07 58.2 48 56.2
ATR0721G095 Amborella trichopoda HOM05D001916 ORTHO05D003272 5.7e-07 58.2 49 51.0
Aqoxy7G00196 Aquilegia oxysepala HOM05D001916 ORTHO05D003272 5.7e-07 58.2 46 56.5
BcaNung03177 Brassica carinata HOM05D001916 ORTHO05D003272 5.7e-07 58.2 46 56.5
Glyma.01G222400 Glycine max HOM05D001916 ORTHO05D003272 5.7e-07 58.2 48 54.2
Os01g0624500 Oryza sativa ssp. japonica HOM05D001916 ORTHO05D003272 5.7e-07 58.2 45 62.2
Oeu011795.1 Olea europaea HOM05D001916 ORTHO05D003272 7.4e-07 57.8 45 60.0
BcaC01g04633 Brassica carinata HOM05D001916 ORTHO05D003272 9.7e-07 57.4 46 56.5
LjContig00312_ERROPOS870357g0000946 Lotus japonicus HOM05D001916 ORTHO05D003272 9.7e-07 57.4 48 54.2
Sp7g21490 Schrenkiella parvula HOM05D001916 ORTHO05D003272 9.7e-07 57.4 46 54.3
BcaB05g23846 Brassica carinata HOM05D001916 ORTHO05D003272 1.3e-06 57.0 46 54.3
Thhalv10025590m.g Eutrema salsugineum HOM05D001916 ORTHO05D003272 1.3e-06 57.0 41 58.5
THA.LOC104813028 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 1.3e-06 57.0 46 58.7
A01p14860 Brassica napus HOM05D001916 ORTHO05D003272 1.6e-06 56.6 42 57.1
BraA01t01428Z Brassica rapa HOM05D001916 ORTHO05D003272 1.6e-06 56.6 42 57.1
Manes.02G016700 Manihot esculenta HOM05D001916 ORTHO05D003272 1.6e-06 56.6 46 54.3
BcaC06g35158 Brassica carinata HOM05D001916 ORTHO05D003272 2.2e-06 56.2 47 53.2
Phvul.002G160300 Phaseolus vulgaris HOM05D001916 ORTHO05D003272 2.2e-06 56.2 48 52.1
arahy.Tifrunner.gnm1.ann1.MC01IH Arachis hypogaea HOM05D001916 ORTHO05D003272 2.8e-06 55.8 48 54.2
A03p54520 Brassica napus HOM05D001916 ORTHO05D003272 3.7e-06 55.5 47 55.3
BraA03t14516Z Brassica rapa HOM05D001916 ORTHO05D014280 3.7e-06 55.5 47 55.3
Lalb_Chr09g0320811 Lupinus albus HOM05D001916 ORTHO05D003272 3.7e-06 55.5 48 47.9
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 3.7e-06 55.5 48 50.0
Zm00001eb159420 Zea mays HOM05D001916 ORTHO05D003272 3.7e-06 55.5 46 56.5
Ca_24534_v3 Cicer arietinum L. HOM05D001916 ORTHO05D003272 6.3e-06 54.7 46 54.3
PGR031G2632 Punica granatum HOM05D001916 ORTHO05D003272 6.3e-06 54.7 48 47.9
A03p29330 Brassica napus HOM05D001916 ORTHO05D003272 8.2e-06 54.3 47 55.3
A09p27900 Brassica napus HOM05D001916 ORTHO05D003272 8.2e-06 54.3 47 55.3
C09p35370 Brassica napus HOM05D001916 ORTHO05D003272 8.2e-06 54.3 47 55.3
BolC9t56378H Brassica oleracea HOM05D001916 ORTHO05D003272 8.2e-06 54.3 47 55.3
BraA03t12130Z Brassica rapa HOM05D001916 ORTHO05D003272 8.2e-06 54.3 47 55.3
BraA09t38359Z Brassica rapa HOM05D001916 ORTHO05D003272 8.2e-06 54.3 47 55.3
VMungo1215G1038 Vigna mungo HOM05D001916 ORTHO05D003272 8.2e-06 54.3 48 50.0


User provided reference genes

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