Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0050251 Rosa chinensis HOM05D002956 ORTHO05D008031 5.5e-59 230.7 113 100.0
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 3.5e-53 211.5 109 91.7
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 3.8e-52 208.0 110 94.5
FAN16G1792 Fragaria x ananassa HOM05D002956 ORTHO05D008031 2.7e-50 201.8 110 90.9
Dinv36148 Davidia involucrata HOM05D002956 ORTHO05D008031 4.7e-50 201.1 108 87.0
Cpa.g.sc34.183 Carica papaya HOM05D002956 ORTHO05D008031 1.8e-49 199.1 108 85.2
FAN11G2127 Fragaria x ananassa HOM05D002956 ORTHO05D008031 1.8e-49 199.1 107 93.5
Atru.chr3.3008 Acer truncatum HOM05D002956 ORTHO05D008031 2.3e-49 198.7 111 82.9
TAR369G0726 Trochodendron aralioides HOM05D002956 ORTHO05D008031 1.5e-48 196.1 109 85.3
Nn7g36838 Nelumbo nucifera HOM05D002956 ORTHO05D008031 2.0e-48 195.7 104 86.5
THA.LOC104826460 Tarenaya hassleriana HOM05D002956 ORTHO05D008031 3.3e-48 194.9 108 85.2
GSVIVG01037341001 Vitis vinifera HOM05D002956 ORTHO05D008031 3.3e-48 194.9 110 86.4
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 4.4e-48 194.5 108 84.3
Cc01_g06320 Coffea canephora HOM05D002956 ORTHO05D008031 2.2e-47 192.2 104 86.5
Sc06g0004740 Simmondsia chinensis HOM05D002956 ORTHO05D008031 2.2e-47 192.2 109 84.4
Actinidia06980 Actinidia chinensis HOM05D002956 ORTHO05D008031 2.8e-47 191.8 106 84.9
Haze_23261 Corylus avellana HOM05D002956 ORTHO05D008031 2.8e-47 191.8 110 83.6
DCAR_006894 Daucus carota HOM05D002956 ORTHO05D008031 3.7e-47 191.4 108 82.4
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 3.7e-47 191.4 109 83.5
COL.COLO4_07384 Corchorus olitorius HOM05D002956 ORTHO05D008031 8.2e-47 190.3 107 82.2
Sabra09G0051500 Salix brachista HOM05D002956 ORTHO05D008031 8.2e-47 190.3 108 78.7
AUR62000217 Chenopodium quinoa HOM05D002956 ORTHO05D008031 1.1e-46 189.9 110 81.8
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 1.4e-46 189.5 108 80.6
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 1.4e-46 189.5 99 89.9
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 1.4e-46 189.5 108 79.6
arahy.Tifrunner.gnm1.ann1.XLU01S Arachis hypogaea HOM05D002956 ORTHO05D008031 2.4e-46 188.7 106 82.1
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 2.4e-46 188.7 101 86.1
CiPaw.14G111000 Carya illinoinensis HOM05D002956 ORTHO05D008031 3.1e-46 188.3 109 81.7
MELO3C014548.2 Cucumis melo HOM05D002956 ORTHO05D008031 4.1e-46 188.0 111 77.5
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 5.3e-46 187.6 109 81.7
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 5.3e-46 187.6 109 81.7
CSS0006448 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D008031 7.0e-46 187.2 103 85.4
Aqoxy2G00442 Aquilegia oxysepala HOM05D002956 ORTHO05D008031 9.1e-46 186.8 104 80.8
Thhalv10002083m.g Eutrema salsugineum HOM05D002956 ORTHO05D008031 9.1e-46 186.8 104 81.7
Sp4g08660 Schrenkiella parvula HOM05D002956 ORTHO05D008031 9.1e-46 186.8 108 79.6
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 1.2e-45 186.4 104 84.6
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 1.2e-45 186.4 110 80.0
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 1.6e-45 186.0 107 79.4
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 1.6e-45 186.0 107 79.4
Ciclev10018203m.g Citrus clementina HOM05D002956 ORTHO05D008031 1.6e-45 186.0 110 79.1
Hund07424 Selenicereus undatus HOM05D002956 ORTHO05D008031 1.6e-45 186.0 108 81.5
Migut.N02382 Erythranthe guttata HOM05D002956 ORTHO05D008031 2.0e-45 185.7 111 81.1
Ca_25980_v3 Cicer arietinum L. HOM05D002956 ORTHO05D008031 2.7e-45 185.3 104 82.7
Phvul.005G020600 Phaseolus vulgaris HOM05D002956 ORTHO05D008031 3.5e-45 184.9 108 79.6
Glyma.08G154800 Glycine max HOM05D002956 ORTHO05D008031 4.5e-45 184.5 104 81.7
Lj6g0022582 Lotus japonicus HOM05D002956 ORTHO05D008031 4.5e-45 184.5 108 79.6
Psat5g191880 Pisum sativum HOM05D002956 ORTHO05D008031 4.5e-45 184.5 104 82.7
Sopen11g024800 Solanum pennellii HOM05D002956 ORTHO05D008031 4.5e-45 184.5 106 80.2
MSTRG.12436 Avicennia marina HOM05D002956 ORTHO05D008031 5.9e-45 184.1 106 83.0
ClCG02G022710 Citrullus lanatus HOM05D002956 ORTHO05D008031 5.9e-45 184.1 109 76.1
Medtr3g045720 Medicago truncatula HOM05D002956 ORTHO05D008031 5.9e-45 184.1 108 80.6
PGSC0003DMG400031243 Solanum tuberosum HOM05D002956 ORTHO05D008031 5.9e-45 184.1 106 79.2
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 7.7e-45 183.7 106 79.2
Sed0014482 Sechium edule HOM05D002956 ORTHO05D008031 7.7e-45 183.7 109 75.2
CARHR118990 Cardamine hirsuta HOM05D002956 ORTHO05D008031 1.0e-44 183.3 106 79.2
ECA233G6038 Erigeron canadensis HOM05D002956 ORTHO05D008031 1.3e-44 183.0 104 83.7
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 1.7e-44 182.6 104 79.8
Oeu061696.1 Olea europaea HOM05D002956 ORTHO05D008031 2.9e-44 181.8 140 67.1
SGA_v2.0_scaffold26G11398 Striga asiatica HOM05D002956 ORTHO05D008031 2.9e-44 181.8 123 72.4
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 3.8e-44 181.4 101 82.2
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 1.1e-43 179.9 101 81.2
HanXRQChr12g0380421 Helianthus annuus HOM05D002956 ORTHO05D008031 3.2e-43 178.3 106 78.3
Duzib150G0193 Durio zibethinus HOM05D002956 ORTHO05D008031 4.2e-43 177.9 109 79.8
Lalb_Chr15g0078511 Lupinus albus HOM05D002956 ORTHO05D008031 9.4e-43 176.8 100 83.0
AT2G26810 Arabidopsis thaliana HOM05D002956 ORTHO05D008031 2.1e-42 175.6 106 77.4
AL4G20000 Arabidopsis lyrata HOM05D002956 ORTHO05D008031 2.7e-42 175.3 108 75.9
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 2.7e-42 175.3 114 74.6
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 2.7e-42 175.3 104 75.0
Zm00001eb329010 Zea mays HOM05D002956 ORTHO05D008031 2.7e-42 175.3 108 72.2
CDE04G0360 Ceratophyllum demersum HOM05D002956 ORTHO05D008031 3.6e-42 174.9 104 78.8
MBI19_g19211_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D008031 3.6e-42 174.9 110 76.4
Carub.0004s0727 Capsella rubella HOM05D002956 ORTHO05D008031 6.1e-42 174.1 104 77.9
QL01p016670 Quercus lobata HOM05D002956 ORTHO05D008031 1.0e-41 173.3 99 81.8
HPP92_001025 Vanilla planifolia HOM05D002956 ORTHO05D008031 1.0e-41 173.3 107 75.7
ATR0307G044 Amborella trichopoda HOM05D002956 ORTHO05D008031 2.6e-40 168.7 106 70.8
VMungo1080G1429 Vigna mungo HOM05D002956 ORTHO05D008031 6.3e-39 164.1 104 76.9
SEGI_15484 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 8.3e-39 163.7 110 68.2
arahy.Tifrunner.gnm1.ann1.1Z9FJQ Arachis hypogaea HOM05D002956 ORTHO05D008031 1.8e-38 162.5 106 74.5
EL10Ac4g10091 Beta vulgaris HOM05D002956 ORTHO05D008031 2.4e-38 162.2 109 70.6
SEGI_28475 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 1.2e-37 159.8 108 67.6
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 1.6e-37 159.5 100 72.0
PGR119G0612 Punica granatum HOM05D002956 ORTHO05D008031 2.0e-37 159.1 138 59.4
FAN21G3062 Fragaria x ananassa HOM05D002956 ORTHO05D008031 4.5e-37 157.9 85 92.9
Psat4g060320 Pisum sativum HOM05D002956 ORTHO05D008031 2.2e-36 155.6 94 77.7
AUR62006562 Chenopodium quinoa HOM05D002956 ORTHO05D008031 2.8e-34 148.7 88 85.2
Rhsim13G0206100 Rhododendron simsii HOM05D002956 ORTHO05D008031 2.0e-32 142.5 81 85.2
PSO384G3941 Papaver somniferum HOM05D002956 ORTHO05D008031 2.6e-32 142.1 104 65.4
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 1.2e-29 133.3 104 56.7
Nitab4.5_0007012g0050 Nicotiana tabacum HOM05D002956 ORTHO05D008031 1.2e-29 133.3 87 73.6
vmacro04048 Vaccinium macrocarpon HOM05D002956 ORTHO05D008031 3.5e-29 131.7 91 74.7
AagrBONN_evm.TU.Sc2ySwM_228.3973 Anthoceros agrestis HOM05D002956 ORTHO05D008031 4.5e-29 131.3 99 59.6
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 1.5e-27 126.3 105 54.3
Aa31LG5G8970 Aethionema arabicum HOM05D002956 ORTHO05D008031 7.3e-27 124.0 83 74.7
Lsat_1_v5_gn_5_63100 Lactuca sativa HOM05D002956 ORTHO05D008031 1.0e-25 120.2 135 50.4
Nitab4.5_0004018g0060 Nicotiana tabacum HOM05D002956 ORTHO05D008031 5.2e-25 117.9 75 77.3
CBR_g39846 Chara braunii HOM05D002956 ORTHO05D008031 1.2e-24 116.7 103 53.4
FAN25G3179 Fragaria x ananassa HOM05D002956 ORTHO05D008031 1.7e-23 112.8 56 89.3
Psat2g099480 Pisum sativum HOM05D002956 ORTHO05D008031 7.3e-19 97.4 104 51.0
FAN25G0087 Fragaria x ananassa HOM05D002956 ORTHO05D008031 2.3e-17 92.4 47 85.1
Solyc11g065040.2 Solanum lycopersicum HOM05D002956 ORTHO05D008031 2.6e-16 89.0 49 77.6
Peaxi162Scf00004g04220 Petunia axillaris HOM05D002956 ORTHO05D008031 3.4e-16 88.6 49 75.5
Zm00001eb110260 Zea mays HOM05D002956 ORTHO05D008031 7.5e-16 87.4 110 46.4
Psat5g130120 Pisum sativum HOM05D001082 ORTHO05D001538 2.9e-15 85.5 94 50.0
Psat2g099560 Pisum sativum HOM05D001082 ORTHO05D001538 3.7e-15 85.1 94 50.0
Ah.06g194770 Amaranthus hybridus HOM05D002956 ORTHO05D008031 8.3e-15 84.0 79 57.0
CAN.G468.2 Capsicum annuum HOM05D002956 ORTHO05D008031 7.8e-13 77.4 42 81.0
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 2.8e-10 68.9 86 47.7
CAN.G1049.9 Capsicum annuum HOM05D002956 ORTHO05D008031 6.8e-09 64.3 37 73.0
unitig_22.g6189 Utricularia gibba HOM05D002956 ORTHO05D008031 3.4e-08 62.0 109 36.7
Dinv04583 Davidia involucrata HOM05D002956 ORTHO05D008031 5.8e-08 61.2 35 80.0
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 8.3e-07 57.4 58 41.4
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 8.3e-07 57.4 57 36.8
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 1.1e-06 57.0 103 34.0
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 1.4e-06 56.6 58 39.7
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 1.4e-06 56.6 70 32.9
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 1.9e-06 56.2 65 41.5
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 1.9e-06 56.2 55 40.0
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 1.9e-06 56.2 55 40.0
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 1.9e-06 56.2 55 40.0
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 9.2e-06 53.9 71 38.0


User provided reference genes

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