Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 3.9e-131 471.5 236 100.0
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 6.6e-107 391.0 238 84.5
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 5.3e-104 381.3 234 83.8
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 1.9e-98 362.8 248 74.6
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 3.3e-98 362.1 246 74.0
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.7e-92 342.4 232 72.0
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 7.9e-92 340.9 241 71.4
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 7.9e-92 340.9 246 69.9
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.8e-91 339.7 241 71.0
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 3.9e-91 338.6 253 70.0
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 8.7e-91 337.4 234 70.5
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 8.7e-91 337.4 234 70.5
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 8.7e-91 337.4 236 72.5
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.5e-90 335.9 236 72.0
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 5.7e-90 334.7 248 68.5
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 5.7e-90 334.7 253 66.4
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 5.7e-90 334.7 243 69.5
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 9.6e-90 334.0 251 68.9
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 1.6e-89 333.2 244 67.6
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.6e-89 333.2 232 71.6
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 8.2e-89 330.9 252 63.5
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 1.4e-88 330.1 247 68.8
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 1.8e-88 329.7 236 67.4
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.8e-88 329.7 247 68.4
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 2.4e-88 329.3 252 67.9
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 5.3e-88 328.2 238 69.3
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 6.9e-88 327.8 236 70.3
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 9.0e-88 327.4 266 64.7
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 9.0e-88 327.4 241 69.3
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 1.2e-87 327.0 236 69.5
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 2.0e-87 326.2 183 84.2
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 2.6e-87 325.9 239 66.5
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 3.4e-87 325.5 266 64.3
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 3.4e-87 325.5 236 68.2
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 4.5e-87 325.1 237 67.5
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.0e-86 323.9 263 66.5
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.7e-86 323.2 246 65.0
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.9e-86 322.4 233 66.5
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 2.9e-86 322.4 213 74.6
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.0e-86 321.6 246 65.9
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 8.4e-86 320.9 248 66.9
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 8.4e-86 320.9 285 58.9
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 1.1e-85 320.5 232 68.5
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 1.1e-85 320.5 181 81.8
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.1e-85 320.5 247 65.2
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 1.1e-85 320.5 249 64.7
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 1.4e-85 320.1 208 75.0
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 1.4e-85 320.1 246 66.3
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.4e-85 320.1 235 67.2
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 1.4e-85 320.1 235 67.2
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.9e-85 319.7 241 68.0
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.9e-85 319.7 234 66.7
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 1.9e-85 319.7 249 64.7
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 2.5e-85 319.3 250 63.6
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 9.3e-85 317.4 249 65.9
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 9.3e-85 317.4 235 66.8
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 2.1e-84 316.2 243 66.7
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 2.7e-84 315.8 247 63.2
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 3.5e-84 315.5 244 64.8
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 4.6e-84 315.1 231 67.5
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 4.6e-84 315.1 245 64.5
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 4.6e-84 315.1 234 65.4
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 6.1e-84 314.7 227 69.6
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 7.9e-84 314.3 235 63.8
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 7.9e-84 314.3 247 65.6
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 1.3e-83 313.5 248 65.3
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.3e-83 312.8 251 65.3
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 6.7e-83 311.2 247 64.8
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 2.5e-82 309.3 232 67.7
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 3.3e-82 308.9 247 65.2
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 4.3e-82 308.5 232 65.5
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 4.3e-82 308.5 236 64.0
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 7.4e-82 307.8 231 65.4
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 7.4e-82 307.8 243 64.6
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 9.7e-82 307.4 231 63.2
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 1.3e-81 307.0 229 66.4
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 2.8e-81 305.8 231 65.8
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 2.8e-81 305.8 248 62.5
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 2.8e-81 305.8 251 64.1
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 2.8e-81 305.8 232 64.2
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 2.8e-81 305.8 264 60.6
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 3.7e-81 305.4 229 65.9
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 6.3e-81 304.7 231 64.9
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 1.4e-80 303.5 231 63.2
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 1.8e-80 303.1 239 64.4
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 3.1e-80 302.4 239 65.7
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.5e-79 300.1 252 60.7
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.5e-79 300.1 245 64.5
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.5e-79 300.1 265 60.8
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 2.0e-79 299.7 233 64.4
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 1.3e-78 297.0 231 63.2
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 1.7e-78 296.6 169 82.8
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 2.9e-78 295.8 234 63.7
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 1.6e-76 290.0 169 78.7
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 2.3e-75 286.2 243 58.0
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 3.0e-75 285.8 244 62.3
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 3.9e-75 285.4 211 68.2
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 3.7e-73 278.9 341 49.0
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.8e-72 276.6 245 56.7
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 6.5e-70 268.1 247 55.5
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 1.8e-67 260.0 206 64.6
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 1.3e-65 253.8 227 57.3
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.3e-65 253.8 210 58.6
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 2.2e-65 253.1 202 62.9
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 6.3e-65 251.5 180 67.8
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 6.3e-65 251.5 245 57.6
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 1.8e-64 250.0 163 74.2
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 3.1e-64 249.2 237 56.5
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 4.1e-64 248.8 200 62.5
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 7.0e-64 248.1 238 55.5
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 2.0e-63 246.5 143 79.0
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 2.9e-62 242.7 171 67.3
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 1.6e-60 236.9 231 54.5
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 4.4e-58 228.8 185 65.9
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.3e-57 227.3 162 66.0
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.7e-57 226.9 247 48.6
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.0e-54 217.6 170 66.5
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 8.5e-54 214.5 182 59.9
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.9e-53 213.4 181 64.1
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.5e-53 213.0 179 57.5
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 5.5e-53 211.8 178 61.2
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 1.5e-50 203.8 156 63.5
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.3e-49 200.7 168 66.7
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 3.2e-45 186.0 226 42.5
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 4.7e-44 182.2 115 78.3
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 1.5e-42 177.2 210 45.7
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 6.3e-41 171.8 146 58.2
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 9.1e-40 167.9 155 60.0
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.2e-39 167.5 98 81.6
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 2.0e-39 166.8 202 49.0
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 1.0e-38 164.5 154 57.1
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 2.5e-37 159.8 188 50.0
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 9.5e-37 157.9 95 76.8
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.6e-36 157.1 141 58.9
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 1.3e-33 147.5 121 59.5
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 9.2e-32 141.4 124 58.9
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.7e-31 139.8 186 44.6
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 1.9e-29 133.7 113 59.3
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 4.3e-29 132.5 115 57.4
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 6.4e-25 118.6 128 49.2
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 6.4e-25 118.6 128 49.2
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.6e-23 114.0 80 68.8
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 2.3e-22 110.2 184 35.9
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 2.5e-21 106.7 67 68.7
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 3.4e-18 96.3 63 68.3
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 2.9e-17 93.2 118 51.7
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 6.4e-17 92.0 64 67.2
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 1.1e-16 91.3 62 69.4
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 4.6e-15 85.9 105 48.6
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.0e-14 84.7 89 53.9
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.5e-13 80.9 89 52.8
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 3.6e-12 76.3 52 69.2
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 3.9e-06 56.2 34 76.5


User provided reference genes

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