Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 1.3e-123 446.4 228 100.0
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 1.9e-82 309.7 236 75.4
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.6e-81 306.6 236 74.6
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 5.1e-80 301.6 242 73.6
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 4.3e-71 271.9 231 67.5
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 3.7e-70 268.9 245 66.1
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 7.4e-63 244.6 229 61.6
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 5.3e-61 238.4 225 57.8
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 2.6e-60 236.1 213 62.9
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 1.3e-59 233.8 220 59.5
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 2.2e-59 233.0 225 56.4
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 2.9e-59 232.6 174 66.7
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 2.9e-59 232.6 226 59.3
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 1.5e-58 230.3 226 58.4
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 2.5e-58 229.6 217 61.8
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 3.2e-58 229.2 214 59.8
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 4.2e-58 228.8 236 60.6
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 8.0e-57 224.6 223 56.5
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 3.0e-56 222.6 231 56.7
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 8.8e-56 221.1 218 60.1
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 2.0e-55 219.9 175 62.9
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 2.0e-55 219.9 230 53.9
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 2.6e-55 219.5 230 56.1
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 2.6e-55 219.5 230 56.1
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 1.1e-53 214.2 172 64.5
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 1.8e-53 213.4 200 58.0
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 2.4e-53 213.0 201 57.7
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 9.1e-53 211.1 214 55.6
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 9.1e-53 211.1 218 55.0
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 1.2e-52 210.7 222 56.8
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 1.6e-52 210.3 211 57.8
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 1.6e-52 210.3 200 57.5
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 7.7e-52 208.0 213 56.3
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.0e-51 207.6 199 58.3
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 2.2e-51 206.5 165 63.0
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 3.8e-51 205.7 213 54.5
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 2.5e-50 203.0 200 55.0
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 1.2e-49 200.7 217 54.8
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 1.2e-49 200.7 156 64.1
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 1.2e-49 200.7 156 64.1
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 3.6e-49 199.1 150 62.7
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 8.0e-49 198.0 146 63.7
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 6.8e-48 194.9 217 52.5
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 6.8e-48 194.9 201 55.2
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 2.0e-47 193.4 188 58.5
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 5.7e-47 191.8 213 53.5
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 2.8e-46 189.5 164 55.5
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 4.8e-46 188.7 165 59.4
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 8.3e-46 188.0 141 67.4
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 2.4e-45 186.4 173 57.8
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 1.6e-44 183.7 155 60.6
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 4.5e-44 182.2 187 54.5
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 5.9e-44 181.8 120 71.7
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 7.7e-44 181.4 215 47.9
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 1.0e-43 181.0 137 64.2
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 1.0e-43 181.0 188 56.4
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 1.7e-43 180.3 197 49.7
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 2.2e-43 179.9 199 50.8
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 6.5e-43 178.3 121 71.9
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 8.5e-43 177.9 144 62.5
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 1.5e-42 177.2 209 49.8
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 1.9e-42 176.8 217 47.5
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 3.2e-42 176.0 215 47.0
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 7.2e-42 174.9 170 55.9
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 2.1e-41 173.3 216 47.7
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 2.1e-41 173.3 215 46.0
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 6.1e-41 171.8 203 49.8
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 6.1e-41 171.8 203 49.8
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 6.1e-41 171.8 204 47.1
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 8.0e-41 171.4 125 65.6
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 8.0e-41 171.4 125 65.6
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 1.8e-40 170.2 203 49.3
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 1.8e-40 170.2 203 49.3
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 2.3e-40 169.9 209 45.9
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 4.0e-40 169.1 125 64.8
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 8.8e-40 167.9 217 48.4
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 8.8e-40 167.9 122 67.2
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 1.2e-39 167.5 116 65.5
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 5.7e-39 165.2 135 57.8
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 9.8e-39 164.5 128 61.7
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 9.8e-39 164.5 115 67.8
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 2.2e-38 163.3 118 61.0
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 4.9e-38 162.2 113 66.4
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 1.4e-37 160.6 203 45.8
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 4.1e-37 159.1 156 51.9
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 5.4e-37 158.7 128 59.4
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 9.1e-37 157.9 101 73.3
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 3.5e-36 156.0 149 55.0
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 1.3e-35 154.1 217 43.8
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 2.3e-35 153.3 130 55.4
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 1.5e-34 150.6 223 40.8
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 1.9e-34 150.2 217 43.3
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 1.2e-33 147.5 217 42.4
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 1.5e-31 140.6 124 59.7
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 2.0e-31 140.2 141 50.4
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 4.9e-30 135.6 172 46.5
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 4.9e-30 135.6 232 43.5
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 1.2e-28 131.0 172 45.3
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 8.6e-27 124.8 286 35.7
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 3.6e-25 119.4 115 53.0
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 1.8e-24 117.1 242 38.8
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 8.9e-24 114.8 184 39.7
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 1.7e-22 110.5 114 53.5
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 3.7e-22 109.4 176 42.0
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 2.4e-21 106.7 73 67.1
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 2.0e-20 103.6 196 35.2
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 3.9e-19 99.4 114 46.5
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 2.2e-14 83.6 108 41.7
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 6.4e-14 82.0 115 38.3
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 6.6e-11 72.0 56 60.7
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 2.1e-09 67.0 114 36.8
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 3.1e-08 63.2 125 34.4
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 8.9e-08 61.6 116 32.8
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 2.6e-07 60.1 112 33.9
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 1.3e-06 57.8 115 32.2
AagrBONN_evm.TU.Sc2ySwM_117.94 Anthoceros agrestis HOM05D007263 ORTHO05D009187 2.9e-06 56.6 78 39.7
SalBow1G5413 Salvia bowleyana HOM05D002878 ORTHO05D003649 2.9e-06 56.6 119 30.3
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 3.7e-06 56.2 115 31.3
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 4.9e-06 55.8 115 30.4
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 4.9e-06 55.8 95 29.5


User provided reference genes

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