Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 4.4e-32 140.6 66 100.0
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 6.1e-26 120.2 63 88.9
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.6e-24 114.8 64 84.4
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 5.7e-24 113.6 64 82.8
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 5.7e-24 113.6 64 84.4
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 5.7e-24 113.6 64 84.4
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 6.3e-23 110.2 65 83.1
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 8.3e-23 109.8 63 82.5
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 8.3e-23 109.8 63 84.1
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 1.1e-22 109.4 63 84.1
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 1.1e-22 109.4 63 84.1
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 2.4e-22 108.2 63 79.4
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 3.1e-22 107.8 64 78.1
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 4.1e-22 107.5 64 79.7
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 4.1e-22 107.5 63 79.4
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 5.4e-22 107.1 66 78.8
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 7.0e-22 106.7 63 82.5
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 9.1e-22 106.3 65 81.5
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 1.2e-21 105.9 68 76.5
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 1.2e-21 105.9 64 78.1
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 2.7e-21 104.8 64 79.7
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 2.7e-21 104.8 63 77.8
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 2.7e-21 104.8 63 82.5
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 5.9e-21 103.6 64 79.7
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 5.9e-21 103.6 63 81.0
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 5.9e-21 103.6 63 77.8
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 5.9e-21 103.6 63 81.0
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 7.7e-21 103.2 63 81.0
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 7.7e-21 103.2 64 79.7
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 7.7e-21 103.2 64 79.7
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 7.7e-21 103.2 64 79.7
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.7e-20 102.1 64 79.7
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 2.3e-20 101.7 63 79.4
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 2.3e-20 101.7 63 77.8
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 2.9e-20 101.3 64 76.6
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 2.9e-20 101.3 64 78.1
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 3.8e-20 100.9 65 80.0
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 3.8e-20 100.9 63 76.2
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 3.8e-20 100.9 63 79.4
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 5.0e-20 100.5 64 78.1
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 6.6e-20 100.1 63 77.8
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 8.6e-20 99.8 65 75.4
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 1.1e-19 99.4 66 75.8
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.1e-19 99.4 63 76.2
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.1e-19 99.4 63 76.2
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 1.1e-19 99.4 68 70.6
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.1e-19 99.4 64 76.6
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 1.1e-19 99.4 64 78.1
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 1.5e-19 99.0 66 77.3
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 1.9e-19 98.6 64 73.4
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 1.9e-19 98.6 66 74.2
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 2.5e-19 98.2 63 77.8
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 2.5e-19 98.2 63 77.8
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 2.5e-19 98.2 60 78.3
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 2.5e-19 98.2 66 75.8
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 3.3e-19 97.8 63 77.8
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 3.3e-19 97.8 63 77.8
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 3.3e-19 97.8 64 78.1
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 3.3e-19 97.8 63 77.8
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 3.3e-19 97.8 63 77.8
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 3.3e-19 97.8 66 72.7
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 3.3e-19 97.8 65 75.4
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 4.2e-19 97.4 66 72.7
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 4.2e-19 97.4 63 73.0
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 4.2e-19 97.4 66 72.7
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 4.2e-19 97.4 66 74.2
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 4.2e-19 97.4 64 79.7
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 5.5e-19 97.1 63 77.8
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 5.5e-19 97.1 68 70.6
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 5.5e-19 97.1 63 73.0
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 7.2e-19 96.7 64 76.6
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 7.2e-19 96.7 63 73.0
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 7.2e-19 96.7 66 74.2
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 9.5e-19 96.3 63 76.2
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 9.5e-19 96.3 63 74.6
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 1.2e-18 95.9 63 71.4
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 1.2e-18 95.9 63 74.6
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 1.2e-18 95.9 63 76.2
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 1.6e-18 95.5 63 69.8
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 2.1e-18 95.1 63 76.2
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 2.1e-18 95.1 63 74.6
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 2.1e-18 95.1 63 74.6
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 2.1e-18 95.1 63 76.2
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 2.8e-18 94.7 65 75.4
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 2.8e-18 94.7 65 75.4
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 2.8e-18 94.7 64 76.6
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 2.8e-18 94.7 68 70.6
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 2.8e-18 94.7 65 75.4
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 3.6e-18 94.4 63 74.6
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 3.6e-18 94.4 62 77.4
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 4.7e-18 94.0 62 71.0
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 4.7e-18 94.0 66 74.2
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 4.7e-18 94.0 62 77.4
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 6.1e-18 93.6 63 73.0
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 8.0e-18 93.2 63 73.0
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 1.4e-17 92.4 69 71.0
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 1.4e-17 92.4 69 68.1
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 1.8e-17 92.0 63 74.6
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 1.8e-17 92.0 64 73.4
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 2.3e-17 91.7 65 70.8
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 2.3e-17 91.7 63 74.6
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 3.0e-17 91.3 63 74.6
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 3.0e-17 91.3 63 74.6
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 3.0e-17 91.3 63 74.6
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.0e-17 91.3 63 71.4
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 3.0e-17 91.3 63 73.0
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 3.0e-17 91.3 64 75.0
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 5.2e-17 90.5 67 71.6
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 5.2e-17 90.5 63 74.6
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.2e-16 89.4 58 75.9
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 1.5e-16 89.0 63 73.0
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.5e-16 89.0 63 65.1
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 2.6e-16 88.2 66 68.2
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 2.6e-16 88.2 63 65.1
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 5.7e-16 87.0 55 81.8
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.7e-15 85.5 64 65.6
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 3.7e-15 84.3 54 77.8
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 4.9e-15 84.0 45 88.9
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.4e-14 82.4 45 86.7
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 3.1e-14 81.3 44 90.9
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 5.4e-14 80.5 58 65.5
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 7.0e-14 80.1 48 75.0
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 2.7e-13 78.2 47 76.6
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 1.7e-12 75.5 42 83.3
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 7.3e-11 70.1 62 58.1
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 6.1e-10 67.0 35 88.6
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 8.9e-09 63.2 34 85.3
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 2.2e-07 58.5 31 87.1
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.1e-06 56.2 50 62.0


User provided reference genes

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