Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0049471 Rosa chinensis HOM05D001268 ORTHO05D001577 7.2e-53 210.3 106 100.0
RcHm_v2.0_Chr1g0364551 Rosa chinensis HOM05D001268 ORTHO05D001577 7.5e-34 147.1 110 76.4
FvH4_2g28400 Fragaria vesca HOM05D000743 ORTHO05D000580 2.0e-26 122.5 119 59.7
FAN24G2155 Fragaria x ananassa HOM05D001268 ORTHO05D001577 2.0e-26 122.5 119 59.7
RcHm_v2.0_Chr6g0297351 Rosa chinensis HOM05D001268 ORTHO05D001577 3.7e-25 118.2 118 60.2
FAN20G2065 Fragaria x ananassa HOM05D001268 ORTHO05D001577 1.4e-24 116.3 118 59.3
FAN27G3426 Fragaria x ananassa HOM05D001268 ORTHO05D001577 4.1e-24 114.8 117 58.1
Prupe.1G485100 Prunus persica HOM05D001268 ORTHO05D001577 2.9e-17 92.0 98 56.1
Cpa.g.sc187.15 Carica papaya HOM05D001268 ORTHO05D001577 7.1e-16 87.4 116 50.0
Psat5g031600 Pisum sativum HOM05D001268 ORTHO05D001577 9.2e-16 87.0 100 53.0
MD15G1129600 Malus domestica HOM05D001268 ORTHO05D001577 1.2e-15 86.7 99 52.5
ClCG08G013480 Citrullus lanatus HOM05D001268 ORTHO05D001577 2.1e-15 85.9 121 45.5
Glyma.04G064600 Glycine max HOM05D001268 ORTHO05D001577 1.3e-14 83.2 107 49.5
Potri.018G023300 Populus trichocarpa HOM05D001268 ORTHO05D001577 1.7e-14 82.8 120 47.5
MD08G1152900 Malus domestica HOM05D001268 ORTHO05D001577 3.9e-14 81.6 99 51.5
Thhalv10014629m.g Eutrema salsugineum HOM05D001268 ORTHO05D001577 8.6e-14 80.5 115 43.5
Glyma.06G065900 Glycine max HOM05D001268 ORTHO05D001577 1.5e-13 79.7 105 48.6
Lj1g0018553 Lotus japonicus HOM05D001268 ORTHO05D001577 2.5e-13 79.0 75 54.7
Atru.chr7.2485 Acer truncatum HOM05D001268 ORTHO05D001577 9.5e-13 77.0 132 43.2
Ciclev10009513m.g Citrus clementina HOM05D001268 ORTHO05D001577 1.2e-12 76.6 98 48.0
Sabra18G0025700 Salix brachista HOM05D001268 ORTHO05D001577 1.2e-12 76.6 124 46.0
Aa31LG11G4470 Aethionema arabicum HOM05D001268 ORTHO05D001577 1.6e-12 76.3 108 45.4
ClCG05G016650 Citrullus lanatus HOM05D001268 ORTHO05D001577 2.1e-12 75.9 77 45.5
QL02p020808 Quercus lobata HOM05D001268 ORTHO05D001577 2.8e-12 75.5 64 60.9
Sabra06G0202100 Salix brachista HOM05D001268 ORTHO05D001577 2.8e-12 75.5 118 47.5
Potri.006G258600 Populus trichocarpa HOM05D001268 ORTHO05D001577 3.6e-12 75.1 121 46.3
TPR.G3115 Trifolium pratense HOM05D001268 ORTHO05D001577 3.6e-12 75.1 108 46.3
VMungo1309G1018 Vigna mungo HOM05D001268 ORTHO05D001577 3.6e-12 75.1 79 51.9
MELO3C016995.2 Cucumis melo HOM05D001268 ORTHO05D001577 4.7e-12 74.7 77 45.5
A06p36000 Brassica napus HOM05D001268 ORTHO05D001577 6.2e-12 74.3 100 44.0
BraA06t26524Z Brassica rapa HOM05D001268 ORTHO05D001577 6.2e-12 74.3 100 44.0
Medtr3g106530 Medicago truncatula HOM05D001268 ORTHO05D001577 8.1e-12 73.9 112 43.8
Sp2g22250 Schrenkiella parvula HOM05D001268 ORTHO05D001577 8.1e-12 73.9 100 46.0
AT5G25280 Arabidopsis thaliana HOM05D001268 ORTHO05D001577 1.1e-11 73.6 107 42.1
CARHR202210 Cardamine hirsuta HOM05D001268 ORTHO05D001577 1.1e-11 73.6 107 45.8
CiPaw.07G226200 Carya illinoinensis HOM05D001268 ORTHO05D001577 1.4e-11 73.2 84 45.2
AL6G36970 Arabidopsis lyrata HOM05D001268 ORTHO05D001577 1.8e-11 72.8 105 42.9
Thhalv10004807m.g Eutrema salsugineum HOM05D001268 ORTHO05D001577 1.8e-11 72.8 111 43.2
Phvul.009G090900 Phaseolus vulgaris HOM05D001268 ORTHO05D001577 1.8e-11 72.8 68 57.4
BcaNung02280 Brassica carinata HOM05D001268 ORTHO05D001577 2.3e-11 72.4 100 43.0
BolC7t44784H Brassica oleracea HOM05D001268 ORTHO05D001577 2.3e-11 72.4 100 43.0
CsaV3_4G036960 Cucumis sativus L. HOM05D001268 ORTHO05D001577 3.1e-11 72.0 77 46.8
Duzib168G0369 Durio zibethinus HOM05D001268 ORTHO05D001577 3.1e-11 72.0 98 44.9
BcaB04g19794 Brassica carinata HOM05D001268 ORTHO05D001577 4.0e-11 71.6 101 47.5
BcaNung05611 Brassica carinata HOM05D001268 ORTHO05D001577 4.0e-11 71.6 101 47.5
Manes.16G125300 Manihot esculenta HOM05D001268 ORTHO05D001577 5.2e-11 71.2 100 49.0
Carub.0006s2310 Capsella rubella HOM05D001268 ORTHO05D001577 6.8e-11 70.9 100 44.0
CARHR188200 Cardamine hirsuta HOM05D001268 ORTHO05D001577 1.2e-10 70.1 102 46.1
Gohir.A06G051500 Gossypium hirsutum HOM05D001268 ORTHO05D001577 1.5e-10 69.7 125 38.4
Sp6g32410 Schrenkiella parvula HOM05D001268 ORTHO05D001577 1.5e-10 69.7 102 44.1
arahy.Tifrunner.gnm1.ann1.Y6JXG3 Arachis hypogaea HOM05D001268 ORTHO05D001577 2.0e-10 69.3 101 47.5
C07p42550 Brassica napus HOM05D001268 ORTHO05D001577 2.0e-10 69.3 100 42.0
COL.COLO4_24143 Corchorus olitorius HOM05D001268 ORTHO05D001577 2.0e-10 69.3 134 38.1
Carub.0006s0959 Capsella rubella HOM05D001268 ORTHO05D001577 2.6e-10 68.9 99 44.4
Haze_21477 Corylus avellana HOM05D001268 ORTHO05D001577 2.6e-10 68.9 63 54.0
Aa31LG3G16060 Aethionema arabicum HOM05D001268 ORTHO05D001577 3.4e-10 68.6 111 41.4
BcaNung03211 Brassica carinata HOM05D001268 ORTHO05D001577 3.4e-10 68.6 102 41.2
Ca_13039_v3 Cicer arietinum L. HOM05D001268 ORTHO05D001577 3.4e-10 68.6 91 49.5
Ca_30355_v3 Cicer arietinum L. HOM05D001268 ORTHO05D001577 3.4e-10 68.6 91 49.5
C09p06870 Brassica napus HOM05D001268 ORTHO05D001577 4.4e-10 68.2 130 43.8
Manes.14G120900 Manihot esculenta HOM05D001268 ORTHO05D001577 4.4e-10 68.2 128 39.8
BcaC04g23580 Brassica carinata HOM05D001268 ORTHO05D001577 5.8e-10 67.8 131 43.5
BolC9t53607H Brassica oleracea HOM05D001268 ORTHO05D001577 5.8e-10 67.8 131 43.5
Duzib168G0092 Durio zibethinus HOM05D001268 ORTHO05D001577 5.8e-10 67.8 120 38.3
Gorai.010G057600 Gossypium raimondii HOM05D001268 ORTHO05D001577 7.6e-10 67.4 123 38.2
MD13G1239000 Malus domestica HOM05D001268 ORTHO05D001577 7.6e-10 67.4 139 38.8
TWI32G1115 Tripterygium wilfordii HOM05D001268 ORTHO05D001577 9.9e-10 67.0 103 42.7
AL6G21720 Arabidopsis lyrata HOM05D001268 ORTHO05D001577 1.3e-09 66.6 105 41.9
Duzib150G0264 Durio zibethinus HOM05D001268 ORTHO05D001577 1.3e-09 66.6 109 38.5
Duzib150G0676 Durio zibethinus HOM05D001268 ORTHO05D001577 1.3e-09 66.6 109 38.5
Gohir.D06G050700 Gossypium hirsutum HOM05D001268 ORTHO05D001577 1.7e-09 66.2 123 37.4
TAR625G0846 Trochodendron aralioides HOM05D001268 ORTHO05D001577 1.7e-09 66.2 102 43.1
Sed0025555 Sechium edule HOM05D001268 ORTHO05D001577 2.2e-09 65.9 93 39.8
Sed0025173 Sechium edule HOM05D001268 ORTHO05D001577 3.8e-09 65.1 106 38.7
Thecc.09G194200 Theobroma cacao HOM05D001268 ORTHO05D001577 6.4e-09 64.3 98 44.9
BcaNung04975 Brassica carinata HOM05D001268 ORTHO05D001577 8.4e-09 63.9 127 37.0
A10p26610 Brassica napus HOM05D001268 ORTHO05D001577 1.4e-08 63.2 110 39.1
BraA10t44718Z Brassica rapa HOM05D001268 ORTHO05D001577 1.4e-08 63.2 110 39.1
CANSAT25G1445 Cannabis sativa HOM05D001268 ORTHO05D001577 1.4e-08 63.2 120 40.8
PGR044G2741 Punica granatum HOM05D001268 ORTHO05D001577 1.4e-08 63.2 72 47.2
AT5G11090 Arabidopsis thaliana HOM05D001268 ORTHO05D001577 1.9e-08 62.8 100 42.0
Lsat_1_v5_gn_7_46921 Lactuca sativa HOM05D001268 ORTHO05D001577 2.4e-08 62.4 129 35.7
CSS0019165 Camellia sinensis var. sinensis HOM05D001268 ORTHO05D001577 3.2e-08 62.0 95 42.1
Duzib187G0507 Durio zibethinus HOM05D001268 ORTHO05D001577 5.4e-08 61.2 106 37.7
HanXRQChr09g0241891 Helianthus annuus HOM05D001268 ORTHO05D001577 5.4e-08 61.2 96 42.7
Gohir.A05G012600 Gossypium hirsutum HOM05D001268 ORTHO05D001577 7.1e-08 60.8 134 34.3
Manes.03G012500 Manihot esculenta HOM05D001268 ORTHO05D001577 7.1e-08 60.8 87 49.4
Nn8g39672 Nelumbo nucifera HOM05D001268 ORTHO05D001577 7.1e-08 60.8 103 40.8
Gohir.D05G013700 Gossypium hirsutum HOM05D001268 ORTHO05D001577 1.2e-07 60.1 134 34.3
Gorai.009G013700 Gossypium raimondii HOM05D001268 ORTHO05D001577 1.2e-07 60.1 134 34.3
PSO017G5196 Papaver somniferum HOM05D001268 ORTHO05D001577 1.2e-07 60.1 104 39.4
PSO170G4687 Papaver somniferum HOM05D001268 ORTHO05D001577 1.2e-07 60.1 104 39.4
Gohir.D08G102001 Gossypium hirsutum HOM05D001268 ORTHO05D001577 1.6e-07 59.7 123 37.4
Cc06_g07590 Coffea canephora HOM05D001268 ORTHO05D001577 2.1e-07 59.3 105 41.0
Gorai.004G110000 Gossypium raimondii HOM05D001268 ORTHO05D001577 2.1e-07 59.3 123 36.6
TWI63G0069 Tripterygium wilfordii HOM05D001268 ORTHO05D001577 2.1e-07 59.3 104 39.4
TWI63G1668 Tripterygium wilfordii HOM05D001268 ORTHO05D001577 2.1e-07 59.3 104 39.4
VMungo1215G2360 Vigna mungo HOM05D001268 ORTHO05D001577 2.1e-07 59.3 105 41.9
BcaNung01910 Brassica carinata HOM05D001268 ORTHO05D001577 2.7e-07 58.9 107 38.3
Gohir.A08G091400 Gossypium hirsutum HOM05D001268 ORTHO05D001577 2.7e-07 58.9 128 35.9
Glyma.17G106600 Glycine max HOM05D001268 ORTHO05D001577 3.5e-07 58.5 99 41.4
Sc08g0005950 Simmondsia chinensis HOM05D001268 ORTHO05D001577 3.5e-07 58.5 105 42.9
HanXRQChr12g0357111 Helianthus annuus HOM05D001268 ORTHO05D001577 4.6e-07 58.2 127 34.6
Lalb_Chr11g0063621 Lupinus albus HOM05D001268 ORTHO05D001577 4.6e-07 58.2 97 44.3
A09p06220 Brassica napus HOM05D001268 ORTHO05D001577 6.0e-07 57.8 129 38.0
BraA09t36266Z Brassica rapa HOM05D001268 ORTHO05D001577 6.0e-07 57.8 129 38.0
AUR62011463 Chenopodium quinoa HOM05D001268 ORTHO05D001577 6.0e-07 57.8 128 36.7
Hma1.2p1_0949F.1_g240680 Hydrangea macrophylla HOM05D001268 ORTHO05D001577 6.0e-07 57.8 103 42.7
Sed0018594 Sechium edule HOM05D001268 ORTHO05D001577 1.0e-06 57.0 84 40.5
MBI15_g41677_MAGBIO Magnolia biondii HOM05D001268 ORTHO05D001577 1.3e-06 56.6 124 37.9
THA.LOC104824652 Tarenaya hassleriana HOM05D001268 ORTHO05D001577 1.3e-06 56.6 102 41.2
CDE02G1237 Ceratophyllum demersum HOM05D001268 ORTHO05D001577 2.3e-06 55.8 103 40.8
CDE05G0287 Ceratophyllum demersum HOM05D001268 ORTHO05D001577 2.3e-06 55.8 103 40.8
Gohir.A02G112709 Gossypium hirsutum HOM05D001268 ORTHO05D001577 3.0e-06 55.5 95 41.1
AUR62016592 Chenopodium quinoa HOM05D001268 ORTHO05D001577 5.1e-06 54.7 128 35.9
COL.COLO4_11848 Corchorus olitorius HOM05D001268 ORTHO05D001577 5.1e-06 54.7 72 43.1
Lalb_Chr08g0244251 Lupinus albus HOM05D001268 ORTHO05D001577 5.1e-06 54.7 100 40.0
Lj5g0006621 Lotus japonicus HOM05D001268 ORTHO05D001577 6.6e-06 54.3 99 40.4
Manes.06G043600 Manihot esculenta HOM05D001268 ORTHO05D001577 6.6e-06 54.3 128 35.9


User provided reference genes

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