Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.0e-70 270.0 138 100.0
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 3.8e-54 214.9 150 80.7
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 3.9e-51 204.9 159 73.6
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.4e-48 195.7 156 71.2
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 7.0e-48 194.1 156 70.5
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.7e-46 189.5 156 69.2
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.7e-46 189.5 156 69.9
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 4.2e-45 184.9 139 75.5
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 9.1e-40 167.2 155 60.6
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 9.1e-40 167.2 123 72.4
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 9.1e-40 167.2 151 61.6
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.2e-39 166.8 152 60.5
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 2.0e-39 166.0 156 59.0
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 2.0e-39 166.0 155 61.3
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 2.0e-39 166.0 156 61.5
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 2.7e-39 165.6 156 61.5
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 4.5e-39 164.9 155 60.0
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.5e-39 164.9 156 57.7
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 4.5e-39 164.9 156 57.7
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.0e-38 163.7 156 60.9
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 1.7e-38 162.9 156 59.0
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.7e-38 162.9 156 57.7
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.7e-38 162.9 156 59.0
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 5.0e-38 161.4 151 60.9
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 6.5e-38 161.0 154 59.1
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.5e-37 159.8 151 60.3
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.2e-37 158.7 156 59.0
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.2e-36 156.8 156 55.8
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 1.6e-36 156.4 154 59.1
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 1.6e-36 156.4 151 58.9
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 1.6e-36 156.4 151 58.9
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.7e-36 155.6 156 58.3
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 3.6e-36 155.2 151 58.9
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.0e-35 153.7 151 58.3
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.8e-35 152.9 149 59.1
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 2.3e-35 152.5 156 57.7
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 8.8e-35 150.6 147 57.8
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.5e-34 149.8 149 55.7
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.6e-34 149.1 152 57.9
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 5.7e-34 147.9 156 56.4
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 7.5e-34 147.5 156 57.7
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 7.5e-34 147.5 151 57.6
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 7.5e-34 147.5 155 56.1
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.3e-33 146.7 149 57.0
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.8e-33 145.6 159 55.3
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 2.8e-33 145.6 156 55.8
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 2.8e-33 145.6 156 55.8
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 3.7e-33 145.2 151 57.6
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 4.9e-33 144.8 156 54.5
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 6.3e-33 144.4 156 53.2
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.8e-32 142.9 156 53.2
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.8e-32 142.9 156 53.2
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 3.1e-32 142.1 156 55.8
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 5.4e-32 141.4 151 55.0
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 5.4e-32 141.4 150 56.7
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 7.0e-32 141.0 154 55.8
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.6e-31 139.8 151 55.6
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 2.7e-31 139.0 163 53.4
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 7.7e-31 137.5 126 63.5
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 1.0e-30 137.1 125 58.4
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 1.3e-30 136.7 151 54.3
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 1.3e-30 136.7 157 51.0
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.7e-30 136.3 156 53.2
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 2.3e-30 136.0 151 55.0
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 2.3e-30 136.0 124 58.9
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 3.8e-30 135.2 156 54.5
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.1e-29 133.7 123 57.7
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 1.5e-29 133.3 149 52.3
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.9e-29 132.9 156 48.7
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 3.3e-29 132.1 123 58.5
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 4.2e-29 131.7 156 51.9
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 5.5e-29 131.3 156 53.2
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 7.2e-29 131.0 151 49.7
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 9.5e-29 130.6 151 52.3
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 1.4e-27 126.7 158 53.2
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.4e-27 126.7 122 58.2
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.4e-27 126.7 122 58.2
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.8e-27 126.3 148 50.0
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.8e-27 126.3 123 54.5
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 2.3e-27 125.9 111 55.9
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 6.8e-27 124.4 152 45.4
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 8.9e-27 124.0 121 57.9
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 8.9e-27 124.0 156 47.4
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.2e-26 123.6 141 49.6
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.2e-26 123.6 141 49.6
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 1.5e-26 123.2 151 47.0
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.0e-26 122.9 140 54.3
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 3.4e-26 122.1 151 51.7
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 4.4e-26 121.7 123 50.4
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 4.4e-26 121.7 123 54.5
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 5.7e-26 121.3 123 50.4
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.7e-26 121.3 153 46.4
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 7.5e-26 120.9 123 53.7
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 7.5e-26 120.9 147 49.7
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 9.8e-26 120.6 156 48.1
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 9.8e-26 120.6 163 44.8
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.3e-25 120.2 150 48.7
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.7e-25 119.8 151 51.0
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.9e-25 119.0 123 52.8
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 4.9e-25 118.2 123 48.8
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 4.9e-25 118.2 84 73.8
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 8.3e-25 117.5 93 66.7
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.8e-24 116.3 121 56.2
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.8e-24 116.3 155 49.0
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.8e-24 116.3 155 49.0
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.8e-24 116.3 156 47.4
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 2.4e-24 115.9 124 52.4
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 4.1e-24 115.2 151 48.3
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 5.4e-24 114.8 151 48.3
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 7.0e-24 114.4 151 48.3
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.6e-23 113.2 148 47.3
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 1.6e-23 113.2 155 45.8
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 2.0e-23 112.8 153 45.8
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 2.7e-23 112.5 155 47.7
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 4.6e-23 111.7 60 88.3
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 4.6e-23 111.7 144 45.8
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 7.8e-23 110.9 156 48.7
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 2.3e-22 109.4 83 66.3
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 5.0e-22 108.2 147 46.3
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.1e-21 107.1 123 49.6
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 1.1e-21 107.1 156 46.2
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 4.3e-21 105.1 123 52.0
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 9.5e-21 104.0 122 50.0
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.2e-20 103.6 123 48.0
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.6e-20 103.2 122 47.5
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 1.0e-19 100.5 122 46.7
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 1.8e-19 99.8 123 48.0
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.8e-19 99.8 153 45.8
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.3e-19 99.4 156 42.9
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.3e-19 99.4 156 42.9
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 3.1e-19 99.0 123 48.0
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 3.1e-19 99.0 123 48.0
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 4.0e-19 98.6 121 47.1
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-18 97.1 123 47.2
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 5.8e-18 94.7 156 44.2
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 1.7e-17 93.2 123 46.3
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 1.9e-16 89.7 102 50.0
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.9e-16 89.7 135 43.7
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 1.9e-16 89.7 156 40.4
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.9e-16 89.7 155 40.0
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 6.0e-15 84.7 95 50.5
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.0e-14 84.0 91 53.8
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 1.0e-14 84.0 69 69.6
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 1.0e-14 84.0 159 40.3
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.7e-14 83.2 48 81.2
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.7e-14 83.2 148 39.9
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 5.0e-14 81.6 147 39.5
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.1e-13 80.5 150 38.0
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 1.9e-13 79.7 146 40.4
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 9.5e-13 77.4 146 41.8
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 4.7e-12 75.1 151 37.7
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 4.7e-12 75.1 79 53.2
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 3.1e-11 72.4 139 37.4
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.2e-10 70.5 155 36.1
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 2.0e-10 69.7 139 36.7
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 2.0e-10 69.7 139 36.7
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 6.4e-09 64.7 156 35.3
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.1e-07 59.7 89 42.7
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 2.7e-07 59.3 44 65.9
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.0e-06 57.4 89 41.6


User provided reference genes

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