Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.2e-148 530.0 305 100.0
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 9.1e-125 450.7 305 86.6
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.8e-123 445.3 308 85.7
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.4e-119 432.2 261 85.8
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.0e-115 418.3 362 71.8
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.0e-115 418.3 362 71.8
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.6e-105 386.7 307 78.2
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 4.4e-95 352.1 258 72.5
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 5.4e-93 345.1 258 70.9
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 1.5e-87 327.0 255 66.7
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.9e-86 322.0 255 65.9
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 3.5e-84 315.8 255 65.5
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 3.5e-84 315.8 258 65.5
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 3.5e-84 315.8 291 59.8
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 4.6e-84 315.5 308 57.8
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 8.6e-83 311.2 258 64.3
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 2.5e-82 309.7 230 70.0
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 5.6e-82 308.5 261 64.0
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 1.3e-78 297.4 255 62.7
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 1.3e-78 297.4 255 62.7
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.9e-78 296.2 255 62.7
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 5.4e-77 292.0 257 59.9
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 9.3e-77 291.2 261 61.7
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 4.6e-76 288.9 258 60.9
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 6.0e-76 288.5 257 59.9
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.0e-75 287.7 257 59.9
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 3.9e-75 285.8 259 60.2
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 5.6e-74 282.0 255 60.8
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 9.6e-74 281.2 258 59.3
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 9.6e-74 281.2 259 57.5
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.3e-73 280.8 258 58.1
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.8e-73 279.6 265 57.4
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 3.6e-73 279.3 265 57.4
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 4.8e-73 278.9 255 60.4
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 4.8e-73 278.9 265 57.4
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 1.4e-72 277.3 257 58.4
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 1.8e-72 276.9 256 59.0
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 1.2e-71 274.2 255 59.6
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 2.2e-70 270.0 256 60.9
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 8.4e-70 268.1 309 51.8
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.9e-69 266.9 206 68.9
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 3.2e-69 266.2 257 58.0
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 3.9e-67 259.2 255 56.5
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 5.1e-67 258.8 258 55.0
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.1e-66 257.7 242 55.4
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 2.5e-66 256.5 208 66.3
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 9.6e-66 254.6 257 56.8
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.6e-65 253.8 357 45.1
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.6e-65 253.8 238 57.1
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.1e-65 253.4 370 43.5
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 2.4e-64 250.0 228 59.2
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 3.1e-64 249.6 256 57.8
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 6.9e-64 248.4 256 57.4
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 6.9e-64 248.4 256 56.6
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 9.0e-64 248.1 257 55.6
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.2e-63 247.7 238 56.3
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 2.0e-63 246.9 269 53.9
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 5.8e-63 245.4 261 52.9
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 7.6e-63 245.0 238 55.5
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 4.9e-62 242.3 263 55.5
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 4.9e-62 242.3 198 62.1
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 8.4e-62 241.5 247 55.1
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.7e-60 236.5 222 56.8
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 5.1e-59 232.3 221 56.6
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 1.1e-58 231.1 255 49.8
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 9.6e-58 228.0 269 50.9
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 3.7e-57 226.1 270 47.4
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 5.3e-56 222.2 262 49.2
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 6.9e-56 221.9 257 48.2
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 9.0e-56 221.5 267 49.1
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.5e-55 220.7 267 49.1
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.5e-55 220.7 267 49.1
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 4.5e-55 219.2 202 59.4
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 5.8e-55 218.8 267 48.7
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.3e-54 217.6 234 52.6
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 2.2e-54 216.9 260 48.5
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 6.5e-54 215.3 267 48.3
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 8.4e-54 214.9 228 51.8
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.1e-53 214.5 232 52.2
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.1e-53 214.5 271 48.0
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.5e-50 204.1 272 48.2
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 5.7e-50 202.2 232 52.2
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.6e-49 200.7 245 53.9
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.1e-49 200.3 230 50.4
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 1.8e-48 197.2 263 46.4
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 6.9e-48 195.3 225 50.2
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 9.0e-48 194.9 261 42.9
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 2.0e-47 193.7 165 61.2
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 8.5e-46 188.3 263 44.1
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 6.1e-44 182.2 291 40.2
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 1.0e-43 181.4 237 42.6
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 5.1e-43 179.1 258 41.9
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 6.7e-43 178.7 276 43.8
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 6.7e-43 178.7 254 46.5
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 8.7e-43 178.3 235 47.7
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.9e-42 177.2 256 40.2
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 4.3e-42 176.0 270 44.1
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 5.7e-42 175.6 259 44.8
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.7e-41 174.1 270 43.7
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 2.2e-41 173.7 254 45.3
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 8.2e-41 171.8 232 46.6
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 6.9e-40 168.7 228 44.3
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 9.1e-40 168.3 232 43.5
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.5e-39 167.5 184 53.8
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 2.0e-39 167.2 235 44.7
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 2.6e-39 166.8 239 43.1
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 8.5e-38 161.8 273 41.0
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.1e-37 161.4 244 41.0
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 1.4e-37 161.0 266 42.1
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 9.4e-37 158.3 138 61.6
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 2.1e-36 157.1 267 38.2
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 6.1e-36 155.6 240 39.6
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 8.8e-35 151.8 165 53.3
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 3.3e-34 149.8 238 39.9
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.3e-33 147.9 206 47.6
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 2.2e-33 147.1 292 36.3
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 2.8e-33 146.7 255 40.8
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 9.1e-32 141.7 138 54.3
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 2.6e-31 140.2 270 38.5
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 3.4e-31 139.8 144 53.5
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 2.7e-28 130.2 291 34.0
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 2.3e-27 127.1 252 37.3
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 3.0e-27 126.7 235 36.2
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 3.3e-26 123.2 222 39.2
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 4.8e-25 119.4 314 29.3
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.4e-24 117.9 213 38.0
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.8e-24 117.5 213 38.0
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 4.1e-24 116.3 224 37.1
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.7e-22 110.9 238 32.8
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 1.9e-21 107.5 129 48.1
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 4.2e-21 106.3 210 34.3
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 7.2e-21 105.5 177 38.4
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 2.7e-20 103.6 83 66.3
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 2.3e-19 100.5 202 34.2
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 2.6e-18 97.1 173 38.7
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 3.3e-18 96.7 187 36.4
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 4.4e-18 96.3 212 31.6
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 2.5e-13 80.5 83 51.8
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 3.2e-13 80.1 255 30.2
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.2e-10 71.6 95 45.3
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 1.1e-08 65.1 77 48.1
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 1.4e-08 64.7 69 49.3
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 2.7e-07 60.5 105 37.1


User provided reference genes

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